BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0660700 Os06g0660700|AK058614
(252 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0660700 Similar to Ubiquitin-conjugating enzyme E2S (E... 478 e-135
Os07g0166800 Rad6 (Ubiquitin carrier protein) 97 1e-20
Os03g0791800 Rad6 (Ubiquitin carrier protein) 97 1e-20
Os05g0182500 Rad6 (Ubiquitin carrier protein) 96 2e-20
Os01g0673600 Similar to Ubiquitin-conjugating enzyme E2 91 6e-19
Os02g0634800 Ubiquitin-conjugating enzyme, E2 domain contai... 91 1e-18
Os02g0120600 Similar to Ubiquitin-conjugating enzyme E2-17 ... 88 8e-18
Os01g0658400 Ubiquitin-conjugating enzyme OsUBC5a 87 1e-17
Os01g0819400 Similar to Ubiquitin-conjugating enzyme (EC 6.... 85 4e-17
Os04g0667800 Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ub... 85 6e-17
Os02g0261100 Ubiquitin-conjugating enzyme OsUBC5b 82 3e-16
Os09g0293400 Similar to Ubiquitin-conjugating enzyme (EC 6.... 82 4e-16
Os01g0925800 Similar to Ubiquitin conjugating enzyme 79 4e-15
Os02g0721100 Similar to E2 ubiquitin-conjugating enzyme Ubc... 75 4e-14
Os01g0605300 Similar to Likely ubiquitin-conjugating enzyme e2 74 8e-14
Os01g0273100 Similar to Ubiquitin conjugating protein-like ... 72 4e-13
>Os06g0660700 Similar to Ubiquitin-conjugating enzyme E2S (EC 6.3.2.19)
(Ubiquitin-conjugating enzyme E2-24 kDa)
(Ubiquitin-protein ligase) (Ubiquitin carrier protein)
(E2-EPF5)
Length = 252
Score = 478 bits (1231), Expect = e-135, Method: Compositional matrix adjust.
Identities = 238/252 (94%), Positives = 238/252 (94%)
Query: 1 MATNENLPPNVVRQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFR 60
MATNENLPPNVVRQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFR
Sbjct: 1 MATNENLPPNVVRQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFR 60
Query: 61 MKLLLSRDFPQSPPKGFFLTKIFHPNIATSGEICVNTLKKDWNPSXXXXXXXXXXXXXXI 120
MKLLLSRDFPQSPPKGFFLTKIFHPNIATSGEICVNTLKKDWNPS I
Sbjct: 61 MKLLLSRDFPQSPPKGFFLTKIFHPNIATSGEICVNTLKKDWNPSLGLRHVLLVVRCLLI 120
Query: 121 EPFPESALNEQAGKLLLENYEEYARHARLYTSIHALKPKNKTKSGTISESTTALNVDQSN 180
EPFPESALNEQAGKLLLENYEEYARHARLYTSIHALKPKNKTKSGTISESTTALNVDQSN
Sbjct: 121 EPFPESALNEQAGKLLLENYEEYARHARLYTSIHALKPKNKTKSGTISESTTALNVDQSN 180
Query: 181 NAVSKNTPLGPAALSTSTANKAFGSNLQDQNAAPSDPALGASAVPKKDGLHAVKAPVEKK 240
NAVSKNTPLGPAALSTSTANKAFGSNLQDQNAAPSDPALGASAVPKKDGLHAVKAPVEKK
Sbjct: 181 NAVSKNTPLGPAALSTSTANKAFGSNLQDQNAAPSDPALGASAVPKKDGLHAVKAPVEKK 240
Query: 241 KIDARKKSLKRL 252
KIDARKKSLKRL
Sbjct: 241 KIDARKKSLKRL 252
>Os07g0166800 Rad6 (Ubiquitin carrier protein)
Length = 152
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%)
Query: 13 RQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFRMKLLLSRDFPQS 72
++L ++ K L + PP GI +D++ A I GP TP++ G F++ L + D+P
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPHDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
Query: 73 PPKGFFLTKIFHPNIATSGEICVNTLKKDWNPSXXXXXXXXXXXXXXIEPFPESALNEQA 132
PP F++++FHPNI G IC++ L+ W+P +P P S N +A
Sbjct: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
Query: 133 GKLLLENYEEYARHAR 148
+L EN EY R R
Sbjct: 127 ARLFSENKREYNRKVR 142
>Os03g0791800 Rad6 (Ubiquitin carrier protein)
Length = 152
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 70/136 (51%)
Query: 13 RQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFRMKLLLSRDFPQS 72
++L ++ K L + PP GI +D++ A I GP TP++ G F++ L + D+P
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPHDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
Query: 73 PPKGFFLTKIFHPNIATSGEICVNTLKKDWNPSXXXXXXXXXXXXXXIEPFPESALNEQA 132
PP F++++FHPNI G IC++ L+ W+P +P P S N +A
Sbjct: 67 PPVVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
Query: 133 GKLLLENYEEYARHAR 148
+L EN EY R R
Sbjct: 127 ARLFSENKREYNRKVR 142
>Os05g0182500 Rad6 (Ubiquitin carrier protein)
Length = 152
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 69/136 (50%)
Query: 13 RQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFRMKLLLSRDFPQS 72
++L ++ K L + PP GI D++ A I GP TP++ G F++ L + D+P
Sbjct: 7 KRLMRDFKRLMQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNK 66
Query: 73 PPKGFFLTKIFHPNIATSGEICVNTLKKDWNPSXXXXXXXXXXXXXXIEPFPESALNEQA 132
PP F++++FHPNI G IC++ L+ W+P +P P S N +A
Sbjct: 67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEA 126
Query: 133 GKLLLENYEEYARHAR 148
+L EN EY R R
Sbjct: 127 ARLFSENKREYNRKVR 142
>Os01g0673600 Similar to Ubiquitin-conjugating enzyme E2
Length = 153
Score = 91.3 bits (225), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 77/152 (50%), Gaps = 4/152 (2%)
Query: 4 NENLPPNVVRQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFRMKL 63
N NLP R++ KE + L P GI ++++ I GPA +PYE GVF+++L
Sbjct: 3 NSNLP----RRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPAQSPYEGGVFKLEL 58
Query: 64 LLSRDFPQSPPKGFFLTKIFHPNIATSGEICVNTLKKDWNPSXXXXXXXXXXXXXXIEPF 123
L ++P + PK FLTKI+HPNI G IC++ LK W+P+ P
Sbjct: 59 FLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPN 118
Query: 124 PESALNEQAGKLLLENYEEYARHARLYTSIHA 155
P+ L++ K N E A+ +T ++A
Sbjct: 119 PDDPLSDNIAKHWKANEAEAVETAKEWTRLYA 150
>Os02g0634800 Ubiquitin-conjugating enzyme, E2 domain containing protein
Length = 157
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 4/151 (2%)
Query: 14 QLAKELKSL--DESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFRMKLLLSRDFPQ 71
+L KE K + ++S I++I +D + A I+GP+ TP+E GVF++ + +P
Sbjct: 7 RLFKEYKEVQREKSADPDIQLICDDSNIFKWTALIKGPSETPFEGGVFQLAFSIPEQYPL 66
Query: 72 SPPKGFFLTKIFHPNIA-TSGEICVNTLKKDWNPSXXXXXXXXXXXXXXIEPFPESALNE 130
PP+ FLTKIFHPN+ +GEIC++ LK W+P+ P P+S LN
Sbjct: 67 LPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNC 126
Query: 131 QAGKLLLE-NYEEYARHARLYTSIHALKPKN 160
+G LL + Y AR+YT + A+ K
Sbjct: 127 DSGNLLRSGDIRGYQSMARMYTRLAAMPKKG 157
>Os02g0120600 Similar to Ubiquitin-conjugating enzyme E2-17 kDa 9 (EC 6.3.2.19)
(Ubiquitin- protein ligase 9) (Ubiquitin carrier protein
9) (UBCAT4B)
Length = 148
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 69/145 (47%)
Query: 12 VRQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFRMKLLLSRDFPQ 71
+R++ KELK L PP DD A I GP +PY GVF + + D+P
Sbjct: 3 LRRIIKELKDLQRDPPTSCSAGPVSDDMFHWQATIMGPNDSPYSGGVFLVTIHFPPDYPF 62
Query: 72 SPPKGFFLTKIFHPNIATSGEICVNTLKKDWNPSXXXXXXXXXXXXXXIEPFPESALNEQ 131
PPK F TK+FHPNI ++G IC++ LK W+P+ +P P+ L +
Sbjct: 63 KPPKVAFKTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPE 122
Query: 132 AGKLLLENYEEYARHARLYTSIHAL 156
+ + Y AR +T +A+
Sbjct: 123 IAHMCKTDRLRYESTARGWTQKYAM 147
>Os01g0658400 Ubiquitin-conjugating enzyme OsUBC5a
Length = 147
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%)
Query: 13 RQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFRMKLLLSRDFPQS 72
+++ KELK L + PP +D A I GP+ +PY GVF + + D+P
Sbjct: 4 KRIQKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFK 63
Query: 73 PPKGFFLTKIFHPNIATSGEICVNTLKKDWNPSXXXXXXXXXXXXXXIEPFPESALNEQA 132
PPK F TK+FHPNI ++G IC++ LK W+P+ +P P+ L +
Sbjct: 64 PPKVAFRTKVFHPNINSNGSICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
Query: 133 GKLLLENYEEYARHARLYTSIHAL 156
+ + +Y AR +T +A+
Sbjct: 124 AHMYKTDRHKYENTARTWTQRYAM 147
>Os01g0819400 Similar to Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin
carrier protein)
Length = 148
Score = 85.1 bits (209), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 71/144 (49%)
Query: 13 RQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFRMKLLLSRDFPQS 72
+++ KELK L + PP +D A I GP +PY GVF + + D+P
Sbjct: 4 KRILKELKDLQKDPPTSCSAGPAGEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFK 63
Query: 73 PPKGFFLTKIFHPNIATSGEICVNTLKKDWNPSXXXXXXXXXXXXXXIEPFPESALNEQA 132
PPK F TK+FHPNI ++G IC++ LK+ W+P+ +P P+ L +
Sbjct: 64 PPKVSFKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
Query: 133 GKLLLENYEEYARHARLYTSIHAL 156
+ + +Y AR +T +A+
Sbjct: 124 AHMYKTDRPKYETTARSWTQKYAM 147
>Os04g0667800 Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin carrier
protein)
Length = 148
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%)
Query: 13 RQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFRMKLLLSRDFPQS 72
+++ KELK L + PP +D A I GP+ +P+ GVF + + D+P
Sbjct: 4 KRILKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSPFAGGVFLVNIHFPPDYPFK 63
Query: 73 PPKGFFLTKIFHPNIATSGEICVNTLKKDWNPSXXXXXXXXXXXXXXIEPFPESALNEQA 132
PPK F TK+FHPNI ++G IC++ LK+ W+P+ +P P+ L +
Sbjct: 64 PPKVSFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
Query: 133 GKLLLENYEEYARHARLYTSIHAL 156
+ + +Y AR +T +A+
Sbjct: 124 AHMYKTDRAKYESTARSWTQKYAM 147
>Os02g0261100 Ubiquitin-conjugating enzyme OsUBC5b
Length = 148
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 71/144 (49%)
Query: 13 RQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFRMKLLLSRDFPQS 72
+++ KELK L + PP +D A + GP+ +PY GVF + + D+P
Sbjct: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATLMGPSDSPYAGGVFLVTIHFPPDYPFK 63
Query: 73 PPKGFFLTKIFHPNIATSGEICVNTLKKDWNPSXXXXXXXXXXXXXXIEPFPESALNEQA 132
PPK TK+FHPNI ++G IC++ LK+ W+P+ +P P+ L +
Sbjct: 64 PPKVALKTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEI 123
Query: 133 GKLLLENYEEYARHARLYTSIHAL 156
+ + +Y AR +T +A+
Sbjct: 124 AHMYKTDRAKYESTARSWTQKYAM 147
>Os09g0293400 Similar to Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin
carrier protein)
Length = 148
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 69/144 (47%)
Query: 13 RQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFRMKLLLSRDFPQS 72
+++ KEL L + PP +D A I GP+ +PY GVF + + D+P
Sbjct: 4 KRIQKELMDLRKDPPTSCSAGPAGEDLFHWQATIMGPSDSPYAGGVFFVNIHFPPDYPFK 63
Query: 73 PPKGFFLTKIFHPNIATSGEICVNTLKKDWNPSXXXXXXXXXXXXXXIEPFPESALNEQA 132
PPK F TK++HPNI ++G IC++ LK+ W+P+ +P P+ L +
Sbjct: 64 PPKVNFQTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSISSLLTDPNPDDPLVPEI 123
Query: 133 GKLLLENYEEYARHARLYTSIHAL 156
+ Y AR +T +A+
Sbjct: 124 AHVYKSQRPRYEETARAWTQKYAM 147
>Os01g0925800 Similar to Ubiquitin conjugating enzyme
Length = 195
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 73/147 (49%), Gaps = 3/147 (2%)
Query: 12 VRQLAKELKSLD-ESPPEGIKVIVNDDD-FTTIFADIEGPAGTPYENGVFRMKLLLSRDF 69
V ++ KEL + + G+ + ++D + + I GP GTPYE G F + + L +
Sbjct: 4 VSRVQKELTECNRDREVSGVSIALHDGSTISHLTGTIAGPQGTPYEGGTFVIDIRLPGGY 63
Query: 70 PQSPPKGFFLTKIFHPNIAT-SGEICVNTLKKDWNPSXXXXXXXXXXXXXXIEPFPESAL 128
P PPK F+TK++HPNI++ +G IC++ LK W+P+ P P+
Sbjct: 64 PFEPPKMQFITKVWHPNISSQNGAICLDILKDQWSPALTLKTALLSLQALLSAPAPDDPQ 123
Query: 129 NEQAGKLLLENYEEYARHARLYTSIHA 155
+ + L +Y ++ AR +T A
Sbjct: 124 DAVVAQQYLRDYSTFSATARYWTEAFA 150
>Os02g0721100 Similar to E2 ubiquitin-conjugating enzyme UbcH5B (Fragment)
Length = 234
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 54/113 (47%)
Query: 46 IEGPAGTPYENGVFRMKLLLSRDFPQSPPKGFFLTKIFHPNIATSGEICVNTLKKDWNPS 105
I+GPA TPY GVF + + D+P PPK FF TK++HPNI G + ++ + +W+P+
Sbjct: 59 IDGPAATPYAGGVFPVDVWFPYDYPFRPPKLFFKTKVYHPNIDGKGRMALDIFQDNWSPA 118
Query: 106 XXXXXXXXXXXXXXIEPFPESALNEQAGKLLLENYEEYARHARLYTSIHALKP 158
+P + N K YE Y AR +T H+ P
Sbjct: 119 LTINKLLLCFVSVLFDPLLDRPTNRCIAKQYKHEYEAYEEKARAWTQKHSSTP 171
>Os01g0605300 Similar to Likely ubiquitin-conjugating enzyme e2
Length = 556
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 71/151 (47%), Gaps = 9/151 (5%)
Query: 14 QLAKELKSLDESPPEGIKVIVNDDD-----FTTIFADIEGPAGTPYENGVFRMKLLLSRD 68
++ KE+K L PP G+ + ++ D+ + A I+GP T Y GVF +K+ +
Sbjct: 10 RMQKEVKLLLNDPPHGVSLNLSGDESALSSLLSFEARIQGPDETVYSKGVFVLKIQIPER 69
Query: 69 FPQSPPKGFFLTKIFHPNIATSGEICVNTL----KKDWNPSXXXXXXXXXXXXXXIEPFP 124
+P PP F+T I+HPNI G IC++ L K W PS +P P
Sbjct: 70 YPFQPPNVTFVTPIYHPNIDNGGRICLDILNLPPKGAWQPSLNIATVLTSIGLLLSDPNP 129
Query: 125 ESALNEQAGKLLLENYEEYARHARLYTSIHA 155
+ L + + N + + +AR +T +A
Sbjct: 130 DDGLMAEISREYKYNRQVFDINARSWTEKYA 160
>Os01g0273100 Similar to Ubiquitin conjugating protein-like
(Ubiquitin-conjugating enzyme) (Ubiquitinating enzyme)
Length = 191
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 57/127 (44%)
Query: 10 NVVRQLAKELKSLDESPPEGIKVIVNDDDFTTIFADIEGPAGTPYENGVFRMKLLLSRDF 69
+VVR+L EL +L G+ D+ + I G A T YE +R+ L ++
Sbjct: 47 SVVRRLQSELMALMMGGDPGVSAFPEGDNIFSWVGTIAGSAATAYEGTSYRLSLAFPGEY 106
Query: 70 PQSPPKGFFLTKIFHPNIATSGEICVNTLKKDWNPSXXXXXXXXXXXXXXIEPFPESALN 129
P PPK F T FHPN+ G IC++ L+ W+ + EP +S LN
Sbjct: 107 PYKPPKVRFETPCFHPNVDAHGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNNDSPLN 166
Query: 130 EQAGKLL 136
QA L
Sbjct: 167 TQAAALW 173
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.310 0.128 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,323,677
Number of extensions: 323333
Number of successful extensions: 765
Number of sequences better than 1.0e-10: 17
Number of HSP's gapped: 767
Number of HSP's successfully gapped: 17
Length of query: 252
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 154
Effective length of database: 11,918,829
Effective search space: 1835499666
Effective search space used: 1835499666
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 155 (64.3 bits)