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Os01g0658400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ubiquitin-conjugating enzyme OsUBC5a.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.7 (0.016) R2 : 0.857
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.17 (0.0417) R2dC : 0.854 R2C : 0.85
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.135 (0.0336) R2dN8 : 0.00655 R2N8 : 0.00309
σ : 0.301
deviance : 41.48
__
_____
C
peak time of C : 6.77
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.23 0.267 13.7 0.0132 1.94 0.673 0.888 -0.186 0.196 7.24 29.26 376 -- --
32.29 0.265 13.7 0.0148 1.94 0.676 0.87 -- 0.196 7.25 29.27 375 -- --
34.29 0.273 13.7 0.0173 1.94 0.673 -- 0.0107 0.198 7.23 29.27 376 -- --
34.28 0.273 13.7 0.0323 1.93 0.689 -- -- 0.196 7.25 29.27 375 -- --
86.5 0.433 13.6 -0.258 -- 1.93 -- 0.749 0.346 -- 3.05 717 -- --
39.3 0.294 13.7 -0.018 2.16 -- 0.925 -- 0.137 6.8 -- -- -- --
41.48 0.302 13.7 -0.00275 2.17 -- -- -- 0.135 6.77 -- -- -- --
54.72 0.345 13.7 0.0544 -- 2.74 -- -- 0.274 -- 2.34 812 -- --
34.3 0.273 13.7 -- 1.93 0.687 -- -- 0.191 7.24 29.27 375 -- --
286.87 0.791 13.7 0.0458 -- -- -- -- 0.177 -- -- -- -- --
41.48 0.301 13.7 -- 2.17 -- -- -- 0.135 6.77 -- -- -- --
54.75 0.345 13.7 -- -- 2.83 -- -- 0.254 -- 2.289 813 -- --
286.93 0.791 13.7 -- -- -- -- -- 0.172 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.13 radiation 40.0 270 < th dose dependent rect. 9 13
2 31.22 radiation 30.0 270 < th dose independent rect. 10 12
11 31.73 radiation 10.0 270 < th dose independent rect. 4 18
17 31.89 radiation 10.0 270 < th dose independent rect. 3 20
22 31.95 radiation 40.0 270 < th dose dependent rect. 2 21
23 31.96 radiation 30.0 270 < th dose independent rect. 2 21
25 32.02 radiation 40.0 270 < th dose dependent rect. 4 18
29 32.06 radiation 30.0 270 < th dose independent rect. 3 19
48 32.24 radiation 40.0 270 < th dose independent rect. 3 10
50 32.29 radiation 40.0 270 < th dose dependent rect. 17 22
51 32.30 radiation 40.0 270 < th dose dependent rect. 17 18
66 32.39 radiation 10.0 270 < th dose independent rect. 13 9
68 32.39 radiation 30.0 270 < th dose dependent rect. 13 9
69 32.41 atmosphere 1000.0 270 > th dose independent rect. 17 5
95 32.50 radiation 30.0 270 < th dose independent rect. 17 22
97 32.51 radiation 40.0 270 < th dose dependent sin 20 NA
105 32.55 radiation 1.0 90 < th dose dependent rect. 23 20
107 32.56 radiation 1.0 90 < th dose independent rect. 23 16
110 32.57 temperature 15.0 270 > th dose independent rect. 17 5
116 32.59 radiation 10.0 270 < th dose independent sin 21 NA
122 32.61 radiation 1.0 90 < th dose independent rect. 23 14
126 32.61 radiation 1.0 90 < th dose dependent rect. 23 18
127 32.62 radiation 1.0 90 < th dose independent rect. 23 11
132 32.63 atmosphere 1010.0 270 < th dose independent rect. 17 5
145 32.65 radiation 1.0 270 > th dose dependent rect. 11 22
146 32.66 radiation 1.0 270 > th dose dependent sin 19 NA
157 32.70 radiation 30.0 270 > th dose independent sin 18 NA
158 32.70 atmosphere 1000.0 90 > th dose independent rect. 5 18
170 32.74 radiation 30.0 270 < th dose independent sin 18 NA
172 32.74 radiation 1.0 90 < th dose dependent rect. 23 14
180 32.75 radiation 1.0 90 < th dose dependent rect. 23 11
205 32.80 radiation 20.0 270 < th dose independent rect. 17 18
206 32.80 wind 9.0 270 < th dose independent rect. 22 19
296 33.05 radiation 1.0 90 < th dose independent rect. 23 20
325 33.12 precipitation 0.1 270 < th dose independent rect. 12 14
326 33.12 radiation 20.0 270 > th dose independent rect. 11 22
331 33.12 precipitation 0.1 270 < th dose dependent rect. 12 14
338 33.14 humidity 50.0 270 > th dose independent rect. 22 19
360 33.18 radiation 30.0 270 > th dose independent rect. 11 5
383 33.19 radiation 10.0 270 < th dose independent rect. 15 20
399 33.22 radiation 20.0 270 < th dose independent rect. 17 5
406 33.22 temperature 10.0 270 > th dose independent rect. 22 19
464 33.33 radiation 40.0 270 < th dose dependent rect. 17 5
468 33.34 wind 1.0 270 > th dose independent rect. 17 5
469 33.34 wind 9.0 270 < th dose independent rect. 17 5
484 33.36 wind 9.0 270 < th dose independent rect. 12 14
498 33.38 wind 1.0 270 > th dose independent rect. 22 19
535 33.42 radiation 1.0 270 > th dose dependent rect. 11 6
585 33.48 precipitation 0.1 270 < th dose independent rect. 22 19
587 33.48 radiation 40.0 270 < th dose dependent no NA NA
589 33.48 precipitation 0.1 270 < th dose dependent rect. 22 19
590 33.49 precipitation 0.1 270 < th dose independent rect. 2 10
597 33.49 precipitation 0.1 270 < th dose dependent rect. 2 10
692 33.61 radiation 1.0 270 > th dose dependent rect. 7 10
706 33.64 humidity 50.0 270 > th dose independent rect. 17 5
879 33.73 radiation 1.0 270 > th dose dependent no NA NA
991 33.78 radiation 20.0 270 < th dose independent no NA NA
998 33.78 radiation 40.0 270 < th dose dependent rect. 8 23