Os04g0667800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin carrier protein).
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Os04g0667800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ubiquitin-conjugating enzyme (EC 6.3.2.19) (Ubiquitin carrier protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.01 | 0.235 | 15.2 | 0.327 | 0.429 | -0.943 | 0.479 | -0.475 | 0.273 | 1.8 | 24.7 | 237 | -- | -- |
| 25.29 | 0.234 | 15.2 | 0.252 | 0.422 | -0.89 | 0.372 | -- | 0.272 | 1.76 | 24.74 | 226 | -- | -- |
| 25.8 | 0.237 | 15.2 | 0.293 | 0.42 | -0.922 | -- | -0.257 | 0.272 | 1.69 | 24.53 | 230 | -- | -- |
| 25.83 | 0.237 | 15.2 | 0.241 | 0.432 | -0.892 | -- | -- | 0.266 | 1.71 | 24.7 | 222 | -- | -- |
| 31.37 | 0.261 | 15.2 | 0.279 | -- | -0.809 | -- | -0.483 | 0.255 | -- | 26.85 | 2387 | -- | -- |
| 36.82 | 0.284 | 15.2 | 0.483 | 0.32 | -- | 0.369 | -- | 0.429 | 1.2 | -- | -- | -- | -- |
| 37.38 | 0.286 | 15.2 | 0.47 | 0.319 | -- | -- | -- | 0.427 | 1.11 | -- | -- | -- | -- |
| 31.58 | 0.262 | 15.2 | 0.161 | -- | -0.781 | -- | -- | 0.234 | -- | 27.7 | 2383 | -- | -- |
| 27.21 | 0.243 | 15.3 | -- | 0.444 | -0.993 | -- | -- | 0.219 | 1.76 | 24.79 | 232 | -- | -- |
| 43.71 | 0.309 | 15.2 | 0.482 | -- | -- | -- | -- | 0.433 | -- | -- | -- | -- | -- |
| 43.19 | 0.307 | 15.2 | -- | 0.327 | -- | -- | -- | 0.375 | 1.17 | -- | -- | -- | -- |
| 32.15 | 0.264 | 15.3 | -- | -- | -0.854 | -- | -- | 0.194 | -- | 27.54 | 2400 | -- | -- |
| 49.83 | 0.33 | 15.2 | -- | -- | -- | -- | -- | 0.38 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.55 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 9 | 23.78 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 36 | 24.12 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 64 | 24.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 122 | 24.93 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 127 | 24.95 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 158 | 25.11 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 161 | 25.12 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 255 | 25.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 8 |
| 287 | 25.53 | temperature | 25 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 426 | 25.92 | temperature | 10 | 720 | > th | dose dependent | sin | 15 | NA |
| 740 | 26.58 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 818 | 26.70 | temperature | 20 | 270 | > th | dose dependent | rect. | 20 | 12 |
| 927 | 26.89 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 22 |
| 982 | 26.97 | temperature | 25 | 4320 | < th | dose dependent | sin | 16 | NA |