Os02g0261100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ubiquitin-conjugating enzyme OsUBC5b.
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Os02g0261100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ubiquitin-conjugating enzyme OsUBC5b.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.7 | 0.292 | 11.8 | -0.42 | 0.708 | -0.731 | 0.467 | 0.432 | -0.0367 | 9.43 | 29.6 | 10 | -- | -- |
| 38.91 | 0.291 | 11.8 | -0.348 | 0.704 | -0.736 | 0.386 | -- | -0.0237 | 9.39 | 28.7 | 9 | -- | -- |
| 39.35 | 0.292 | 11.8 | -0.361 | 0.711 | -0.747 | -- | 0.183 | -0.0262 | 9.27 | 29.56 | 8 | -- | -- |
| 39.39 | 0.292 | 11.8 | -0.344 | 0.706 | -0.756 | -- | -- | -0.0196 | 9.26 | 29.5 | 8 | -- | -- |
| 66.93 | 0.383 | 11.8 | -0.424 | -- | -1.01 | -- | 0.181 | -0.0726 | -- | 29.56 | 8 | -- | -- |
| 46.48 | 0.32 | 11.7 | -0.172 | 0.816 | -- | 0.44 | -- | 0.129 | 10.5 | -- | -- | -- | -- |
| 47.26 | 0.322 | 11.7 | -0.155 | 0.815 | -- | -- | -- | 0.13 | 10.4 | -- | -- | -- | -- |
| 66.91 | 0.383 | 11.8 | -0.393 | -- | -1.01 | -- | -- | -0.0629 | -- | 29.8 | 2 | -- | -- |
| 42.14 | 0.304 | 11.8 | -- | 0.719 | -0.612 | -- | -- | 0.0415 | 9.55 | 29.5 | 8 | -- | -- |
| 87.91 | 0.438 | 11.8 | -0.169 | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
| 47.9 | 0.324 | 11.7 | -- | 0.816 | -- | -- | -- | 0.147 | 10.4 | -- | -- | -- | -- |
| 70.63 | 0.391 | 11.8 | -- | -- | -0.922 | -- | -- | -0.00488 | -- | 29.8 | 2 | -- | -- |
| 88.66 | 0.439 | 11.8 | -- | -- | -- | -- | -- | 0.145 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.02 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 3 | 33.10 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 4 | 33.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 6 | 33.23 | temperature | 25 | 10 | > th | dose independent | rect. | 6 | 5 |
| 7 | 33.26 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 17 | 33.96 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 5 |
| 30 | 34.37 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 5 |
| 32 | 34.45 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 45 | 34.79 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 16 |
| 46 | 34.84 | temperature | 20 | 270 | > th | dose independent | rect. | 5 | 3 |
| 92 | 35.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 111 | 35.89 | temperature | 20 | 10 | > th | dose dependent | sin | 5 | NA |
| 122 | 35.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 16 |
| 125 | 36.01 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 18 |
| 141 | 36.13 | temperature | 30 | 10 | < th | dose dependent | sin | 3 | NA |
| 142 | 36.15 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 10 |
| 146 | 36.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 193 | 36.54 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 13 |
| 214 | 36.72 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 219 | 36.73 | temperature | 25 | 10 | > th | dose dependent | sin | 8 | NA |
| 224 | 36.74 | atmosphere | 995 | 30 | > th | dose dependent | rect. | 11 | 19 |
| 225 | 36.75 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 238 | 36.82 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 247 | 36.87 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 249 | 36.88 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 19 |
| 255 | 36.92 | wind | 3 | 30 | < th | dose independent | rect. | 6 | 5 |
| 288 | 37.03 | wind | 5 | 30 | < th | dose dependent | rect. | 6 | 5 |
| 289 | 37.03 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 9 |
| 319 | 37.12 | temperature | 30 | 30 | < th | dose independent | rect. | 11 | 19 |
| 321 | 37.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 12 |
| 332 | 37.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 21 |
| 337 | 37.19 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 343 | 37.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 369 | 37.27 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 15 |
| 399 | 37.34 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 400 | 37.34 | temperature | 15 | 10 | > th | dose dependent | rect. | 21 | 14 |
| 406 | 37.35 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 10 |
| 407 | 37.36 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 13 |
| 411 | 37.36 | temperature | 15 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 423 | 37.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 3 |
| 425 | 37.39 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 456 | 37.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 15 |
| 470 | 37.48 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 8 |
| 491 | 37.51 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 19 |
| 596 | 37.66 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 629 | 37.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 642 | 37.73 | wind | 9 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 699 | 37.81 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 5 |
| 847 | 38.00 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 869 | 38.03 | radiation | 30 | 10 | < th | dose independent | rect. | 6 | 5 |
| 870 | 38.03 | temperature | 25 | 30 | < th | dose independent | rect. | 2 | 15 |
| 914 | 38.09 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |