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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0721100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to E2 ubiquitin-conjugating enzyme UbcH5B (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0123) R2 : 0.685
β1 : -0.106 (0.0453) R2dD : 0.00396 R2D : 0.0115
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.72 (0.123) R2dE : 0.151 R2E : 0.299
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.6 (0.343) R2dD*E : 0.376 R2D*E : 0.527
γ1 : 0.0117 (0.0264) R2dN8 : 0.000183 R2N8 : -0.000763
σ : 0.231
deviance : 24.51
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 21.26
memory length : 41
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 6.8
open length of G : 0.921

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.31 0.232 2.91 -0.106 0.0576 1.7 0.0169 -7.6 0.0119 11.1 21.2 42 6.79 0.918
50.24 0.33 2.91 -0.152 0.0395 2.57 -0.371 -- 0.00677 10.2 21.28 18 6.5 1.21
24.31 0.23 2.91 -0.105 0.0576 1.7 -- -7.6 0.0119 11 21.21 41 6.8 0.918
50.64 0.331 2.92 -0.173 0.0569 2.53 -- -- -0.00329 10.8 21.42 40 6.54 1.23
24.51 0.231 2.91 -0.106 -- 1.72 -- -7.6 0.0117 -- 21.26 41 6.8 0.921
73.56 0.402 2.92 -0.21 0.128 -- -0.861 -- -0.0416 7.27 -- -- -- --
75.37 0.407 2.92 -0.227 0.134 -- -- -- -0.0387 8.84 -- -- -- --
44.73 0.311 2.93 -0.149 -- 2.56 -- -- -0.0136 -- 20.62 45 6.91 0.484
51.43 0.334 2.91 -- 0.0578 2.55 -- -- 0.0163 11.1 21.59 36 6.57 1.23
76.4 0.408 2.93 -0.227 -- -- -- -- -0.0377 -- -- -- -- --
76.73 0.41 2.92 -- 0.134 -- -- -- -0.0135 8.96 -- -- -- --
42.81 0.305 2.91 -- -- 3.43 -- -- 0.0162 -- 20.5 44 6.81 0.548
77.75 0.412 2.92 -- -- -- -- -- -0.0126 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.98 temperature 25.0 10 < th dose dependent rect. 8 1
14 36.64 radiation 1.0 10 > th dose dependent rect. 7 1
52 42.94 atmosphere 1000.0 30 > th dose dependent rect. 7 1
55 43.24 humidity 80.0 90 < th dose dependent rect. 24 7
60 43.47 temperature 25.0 10 < th dose independent rect. 7 1
67 43.51 humidity 70.0 90 < th dose dependent rect. 19 13
69 43.52 humidity 70.0 90 < th dose independent rect. 19 13
72 43.52 radiation 30.0 10 > th dose dependent rect. 7 1
107 43.52 humidity 70.0 10 < th dose dependent rect. 19 13
147 43.54 humidity 80.0 90 < th dose independent rect. 6 1
148 43.54 humidity 70.0 10 < th dose independent rect. 7 1
151 43.54 radiation 20.0 90 > th dose independent rect. 6 1
222 43.54 humidity 80.0 90 < th dose dependent rect. 6 1
223 43.54 humidity 70.0 10 < th dose dependent rect. 7 1
716 47.13 wind 3.0 10 > th dose independent rect. 7 1
779 48.16 wind 5.0 30 < th dose independent rect. 7 1
829 50.15 wind 9.0 1440 < th dose independent rect. 8 1
832 50.15 temperature 10.0 1440 > th dose independent rect. 8 1
837 50.15 humidity 50.0 1440 > th dose independent rect. 8 1
839 50.15 atmosphere 995.0 1440 > th dose independent rect. 8 1
842 50.15 atmosphere 1015.0 1440 < th dose independent rect. 8 1
843 50.15 temperature 10.0 1440 > th dose independent rect. 9 23
847 50.16 atmosphere 1000.0 30 > th dose independent rect. 8 23
848 50.19 atmosphere 1010.0 30 < th dose independent rect. 7 1
849 50.20 precipitation 0.1 30 < th dose independent rect. 7 1
850 50.20 precipitation 0.1 30 < th dose dependent rect. 7 1
851 50.21 atmosphere 1000.0 30 > th dose independent rect. 7 1
853 50.22 temperature 10.0 30 > th dose independent rect. 7 1
856 50.22 humidity 50.0 30 > th dose independent rect. 7 1
860 50.22 temperature 10.0 30 > th dose independent rect. 8 23
886 50.45 wind 1.0 10 > th dose dependent rect. 7 1
889 50.56 temperature 20.0 270 < th dose independent rect. 4 3
891 50.78 precipitation 0.1 30 < th dose independent rect. 8 23
893 50.78 precipitation 0.1 30 < th dose dependent rect. 8 23
896 50.90 wind 9.0 30 < th dose independent rect. 8 23
934 51.24 temperature 20.0 270 < th dose dependent rect. 4 1
966 52.26 wind 9.0 30 < th dose dependent rect. 7 1
998 52.88 precipitation 0.1 1440 < th dose independent rect. 8 1
999 52.88 precipitation 0.1 1440 < th dose dependent rect. 8 1