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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0605300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Likely ubiquitin-conjugating enzyme e2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.11 (0.0339) R2 : 0.538
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.96 (0.0856) R2dC : 0.534 R2C : 0.527
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.208 (0.0712) R2dN8 : 0.0111 R2N8 : 0.00348
σ : 0.638
deviance : 186.19
__
_____
C
peak time of C : 20.4
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
148.13 0.572 4.08 0.725 1.91 -0.537 2.23 -0.31 0.327 20.3 9.262 4362 -- --
148.2 0.567 4.08 0.732 1.91 -0.499 2.22 -- 0.325 20.3 9.214 4372 -- --
163.55 0.596 4.08 0.727 1.91 -0.498 -- -0.262 0.335 20.3 9.229 4337 -- --
163.56 0.596 4.08 0.686 1.92 -0.462 -- -- 0.324 20.3 9.108 4337 -- --
358.6 0.882 4.01 0.45 -- -1.18 -- -1.82 0.305 -- 8.899 4334 -- --
154.7 0.583 4.09 0.871 1.97 -- 2.14 -- 0.297 20.4 -- -- -- --
169.06 0.609 4.09 0.806 1.96 -- -- -- 0.298 20.4 -- -- -- --
344.95 0.865 3.97 0.723 -- -1.17 -- -- 0.574 -- 10.56 4378 -- --
172.69 0.612 4.09 -- 2.02 -0.672 -- -- 0.335 20.2 7.065 5050 -- --
383.36 0.915 4.04 0.795 -- -- -- -- 0.277 -- -- -- -- --
186.19 0.638 4.11 -- 1.96 -- -- -- 0.208 20.4 -- -- -- --
358.06 0.881 3.99 -- -- -1.23 -- -- 0.478 -- 10.51 4281 -- --
400.02 0.934 4.06 -- -- -- -- -- 0.189 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 138.58 wind 5.0 30 < th dose independent rect. 17 17
3 139.04 temperature 20.0 30 > th dose independent rect. 10 16
4 139.17 atmosphere 1000.0 10 > th dose independent rect. 10 8
5 139.22 temperature 20.0 10 > th dose independent rect. 10 8
13 139.59 atmosphere 995.0 30 > th dose dependent rect. 10 8
15 139.73 wind 5.0 30 < th dose independent rect. 14 20
16 139.75 temperature 10.0 1440 > th dose independent rect. 11 8
20 139.75 temperature 10.0 1440 > th dose independent rect. 19 16
23 139.75 atmosphere 995.0 1440 > th dose independent rect. 19 16
26 139.93 precipitation 0.1 10 < th dose independent rect. 18 16
27 139.93 precipitation 0.1 10 < th dose dependent rect. 18 16
34 140.29 wind 7.0 270 < th dose independent rect. 11 23
35 140.33 radiation 1.0 270 > th dose independent rect. 17 14
36 140.35 wind 7.0 270 < th dose independent rect. 4 15
42 140.69 humidity 60.0 30 > th dose independent rect. 18 16
43 140.71 atmosphere 1010.0 270 < th dose independent rect. 19 9
47 140.76 temperature 10.0 270 > th dose dependent rect. 14 9
48 140.80 precipitation 0.1 30 < th dose independent rect. 10 8
49 140.80 precipitation 0.1 30 < th dose dependent rect. 10 8
53 140.82 temperature 10.0 10 > th dose independent rect. 10 8
55 140.82 atmosphere 1015.0 10 < th dose independent rect. 10 8
58 140.82 temperature 10.0 10 > th dose independent rect. 18 16
67 140.95 atmosphere 995.0 10 > th dose independent rect. 18 16
69 141.01 temperature 25.0 270 > th dose independent rect. 14 6
71 141.08 temperature 20.0 30 > th dose independent rect. 10 21
74 141.19 temperature 30.0 270 < th dose dependent rect. 5 2
75 141.20 wind 1.0 30 > th dose independent rect. 4 6
79 141.45 temperature 20.0 30 > th dose independent rect. 10 19
82 141.51 wind 9.0 30 < th dose independent rect. 10 8
83 141.52 radiation 1.0 270 > th dose independent sin 12 NA
84 141.53 temperature 30.0 270 < th dose dependent rect. 4 4
86 141.57 temperature 25.0 10 > th dose independent rect. 14 8
90 141.62 wind 1.0 30 > th dose independent rect. 10 8
100 141.76 temperature 10.0 270 > th dose dependent rect. 13 11
102 141.77 atmosphere 995.0 270 > th dose independent rect. 8 20
112 141.90 temperature 20.0 30 > th dose independent rect. 21 21
113 141.91 temperature 25.0 10 > th dose independent rect. 17 5
118 141.97 temperature 30.0 30 < th dose independent rect. 18 16
120 142.00 temperature 20.0 270 > th dose independent rect. 21 17
124 142.03 atmosphere 995.0 90 > th dose independent rect. 10 19
125 142.03 temperature 10.0 270 > th dose dependent rect. 20 8
136 142.18 wind 9.0 90 < th dose dependent rect. 17 17
138 142.22 radiation 1.0 270 < th dose independent sin 12 NA
152 142.36 wind 9.0 10 < th dose dependent rect. 18 16
168 142.50 radiation 1.0 270 < th dose independent rect. 14 14
172 142.53 humidity 70.0 270 > th dose independent rect. 19 9
178 142.57 humidity 90.0 10 < th dose independent rect. 3 7
180 142.60 temperature 10.0 1440 > th dose independent rect. 6 5
183 142.60 atmosphere 995.0 1440 > th dose independent rect. 6 5
189 142.60 temperature 10.0 1440 > th dose independent rect. 11 19
195 142.62 atmosphere 1015.0 90 < th dose independent rect. 10 19
197 142.64 atmosphere 1015.0 90 < th dose dependent rect. 5 5
206 142.68 temperature 30.0 270 < th dose independent rect. 9 19
207 142.68 atmosphere 1015.0 270 < th dose dependent rect. 5 2
226 142.77 wind 5.0 30 < th dose independent rect. 14 7
229 142.80 atmosphere 1000.0 270 > th dose independent rect. 8 8
233 142.82 atmosphere 995.0 10 > th dose independent rect. 10 21
241 142.86 atmosphere 1015.0 30 < th dose independent rect. 10 16
243 142.86 radiation 1.0 270 < th dose dependent rect. 14 14
250 142.87 radiation 1.0 270 < th dose dependent sin 12 NA
259 142.91 precipitation 0.1 270 < th dose independent rect. 4 4
262 142.91 precipitation 0.1 270 < th dose dependent rect. 4 4
266 142.92 temperature 15.0 270 > th dose independent rect. 8 20
274 142.96 atmosphere 1010.0 270 < th dose independent rect. 4 4
278 142.97 wind 9.0 90 < th dose independent rect. 5 5
279 142.97 temperature 10.0 90 > th dose independent rect. 5 5
281 142.97 humidity 50.0 90 > th dose independent rect. 5 5
282 142.97 atmosphere 995.0 90 > th dose independent rect. 5 5
293 143.02 temperature 20.0 270 > th dose independent rect. 8 8
304 143.06 radiation 40.0 270 < th dose independent rect. 4 4
306 143.07 wind 5.0 270 < th dose independent rect. 17 1
307 143.07 temperature 30.0 90 < th dose independent rect. 10 7
312 143.08 temperature 30.0 270 < th dose independent rect. 4 4
330 143.10 wind 1.0 10 > th dose independent rect. 10 18
337 143.12 radiation 1.0 270 < th dose dependent rect. 7 21
340 143.13 atmosphere 1015.0 270 < th dose independent rect. 8 20
373 143.31 atmosphere 1015.0 30 < th dose independent rect. 10 21
391 143.35 atmosphere 1015.0 10 < th dose dependent rect. 6 4
400 143.40 wind 9.0 90 < th dose independent rect. 10 19
413 143.46 wind 1.0 720 > th dose dependent rect. 10 2
460 143.56 wind 9.0 270 < th dose dependent rect. 5 3
461 143.57 radiation 1.0 10 > th dose independent rect. 7 3
470 143.60 temperature 20.0 30 > th dose dependent rect. 2 1
476 143.62 wind 1.0 270 > th dose independent rect. 8 20
503 143.65 temperature 15.0 270 > th dose independent rect. 19 9
523 143.73 precipitation 0.1 90 < th dose independent rect. 10 19
524 143.73 precipitation 0.1 90 < th dose dependent rect. 10 19
527 143.75 humidity 90.0 30 > th dose independent rect. 2 1
530 143.75 wind 9.0 270 < th dose independent rect. 8 20
537 143.77 temperature 20.0 30 > th dose independent rect. 2 1
539 143.77 precipitation 0.1 10 < th dose independent rect. 7 3
544 143.77 precipitation 0.1 10 < th dose dependent rect. 7 3
547 143.78 temperature 20.0 90 > th dose independent rect. 21 9
549 143.78 humidity 80.0 30 > th dose dependent rect. 2 1
551 143.79 wind 5.0 30 < th dose independent rect. 2 1
561 143.81 wind 5.0 30 < th dose independent rect. 17 4
562 143.81 wind 1.0 270 > th dose independent rect. 8 7
564 143.81 wind 7.0 30 < th dose dependent rect. 2 1
568 143.82 wind 1.0 90 > th dose independent rect. 10 18
579 143.84 wind 9.0 10 < th dose independent rect. 7 3
581 143.84 temperature 10.0 10 > th dose independent rect. 7 3
585 143.84 humidity 50.0 10 > th dose independent rect. 7 3
587 143.84 atmosphere 995.0 10 > th dose independent rect. 7 3
589 143.84 atmosphere 1015.0 10 < th dose independent rect. 7 3
597 143.85 radiation 1.0 90 > th dose independent rect. 5 5
609 143.86 temperature 10.0 1440 > th dose independent rect. 8 3
612 143.86 atmosphere 995.0 1440 > th dose independent rect. 8 3
615 143.86 temperature 10.0 1440 > th dose independent rect. 11 21
620 143.87 temperature 20.0 10 > th dose independent rect. 22 4
623 143.87 atmosphere 995.0 270 > th dose dependent rect. 8 8
629 143.89 wind 9.0 1440 < th dose independent rect. 3 1
630 143.89 temperature 10.0 1440 > th dose independent rect. 3 1
633 143.89 temperature 30.0 1440 < th dose independent rect. 3 1
637 143.89 humidity 50.0 1440 > th dose independent rect. 3 1
646 143.89 atmosphere 995.0 1440 > th dose independent rect. 3 1
647 143.89 radiation 1.0 1440 < th dose independent rect. 3 1
667 143.89 wind 1.0 30 > th dose independent rect. 7 3
675 143.89 wind 5.0 30 < th dose independent rect. 14 10
679 143.89 temperature 10.0 1440 > th dose independent rect. 4 23
683 143.89 radiation 1.0 1440 < th dose dependent rect. 3 1
695 143.90 humidity 50.0 270 > th dose dependent rect. 19 9
697 143.91 temperature 10.0 30 > th dose independent rect. 2 1
699 143.91 temperature 30.0 30 < th dose independent rect. 2 1
700 143.91 humidity 50.0 30 > th dose independent rect. 2 1
703 143.91 atmosphere 995.0 30 > th dose independent rect. 2 1
704 143.91 atmosphere 1010.0 30 < th dose independent rect. 2 1
706 143.91 radiation 1.0 30 < th dose independent rect. 2 1
711 143.91 precipitation 0.1 30 < th dose independent rect. 2 1
714 143.91 precipitation 0.1 270 < th dose independent rect. 4 15
715 143.91 temperature 10.0 30 > th dose independent rect. 3 23
716 143.91 radiation 1.0 30 < th dose dependent rect. 2 1
722 143.91 precipitation 0.1 30 < th dose dependent rect. 2 1
723 143.91 precipitation 0.1 270 < th dose dependent rect. 4 15
724 143.92 atmosphere 1000.0 30 > th dose dependent rect. 2 1
737 143.94 radiation 1.0 10 > th dose dependent rect. 17 17
762 143.95 radiation 40.0 270 < th dose dependent rect. 5 2
764 143.96 radiation 1.0 270 > th dose independent rect. 5 2
768 143.96 radiation 30.0 270 < th dose independent rect. 16 16
774 143.97 atmosphere 995.0 30 > th dose independent rect. 10 16
793 143.98 atmosphere 1015.0 30 < th dose dependent rect. 2 1
802 143.99 radiation 1.0 270 > th dose dependent rect. 17 14
808 144.01 temperature 10.0 270 > th dose independent rect. 8 8
809 144.01 atmosphere 1015.0 270 < th dose independent rect. 8 8
815 144.03 precipitation 0.1 270 < th dose independent rect. 8 8
822 144.03 precipitation 0.1 270 < th dose dependent rect. 8 8
832 144.05 temperature 30.0 270 < th dose independent rect. 19 9
834 144.05 atmosphere 995.0 270 > th dose independent rect. 19 9
836 144.05 radiation 1.0 270 < th dose independent rect. 19 9
841 144.05 temperature 10.0 270 > th dose independent rect. 4 15
843 144.05 atmosphere 1015.0 270 < th dose independent rect. 4 15
848 144.05 radiation 1.0 270 < th dose dependent rect. 19 9
853 144.05 radiation 1.0 270 > th dose dependent rect. 16 16
915 144.15 temperature 10.0 270 > th dose dependent rect. 4 17
917 144.16 radiation 1.0 90 > th dose independent rect. 10 7
918 144.16 wind 9.0 270 < th dose independent rect. 19 9
940 144.20 precipitation 0.1 30 < th dose independent rect. 2 8
941 144.20 precipitation 0.1 30 < th dose dependent rect. 2 8
948 144.21 temperature 25.0 270 < th dose dependent rect. 11 8
970 144.25 precipitation 0.1 270 < th dose independent rect. 8 20
972 144.25 precipitation 0.1 270 < th dose dependent rect. 8 20
980 144.26 humidity 80.0 10 < th dose independent rect. 18 16
999 144.30 wind 9.0 30 < th dose independent rect. 10 21
1000 144.30 humidity 50.0 270 > th dose dependent rect. 5 2