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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0273100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ubiquitin conjugating protein-like (Ubiquitin-conjugating enzyme) (Ubiquitinating enzyme).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.75 (0.0687) R2 : 0.358
β1 : -5.03 (0.485) R2dD : 1.53 R2D : -1.21
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.59 (0.229) R2dE : 0.756 R2E : -0.523
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -17.4 (1.82) R2dD*E : 1.46 R2D*E : -1.43
γ1 : 0.181 (0.12) R2dN8 : 0.00706 R2N8 : -0.0646
σ : 0.789
deviance : 286.73
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.77
memory length : 5643
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
277.66 0.783 3.68 -4.28 0.452 2.2 -0.558 -13.7 0.133 8.86 26.7 5610 -- --
322.9 0.837 3.35 -1.81 0.491 1.51 -0.705 -- 0.355 9.94 -39.65 24265 -- --
277.74 0.776 3.66 -4.17 0.437 2.2 -- -13.7 0.224 8.53 27.23 5624 -- --
316.76 0.829 3.33 -1.2 0.485 1.5 -- -- 0.477 8.92 -36.07 8480 -- --
286.73 0.789 3.75 -5.03 -- 2.59 -- -17.4 0.181 -- 27.77 5643 -- --
352.38 0.88 3.23 -0.381 0.473 -- -0.697 -- 0.922 8.63 -- -- -- --
353.91 0.881 3.23 -0.405 0.479 -- -- -- 0.921 8.39 -- -- -- --
329.86 0.846 3.34 -1.21 -- 1.5 -- -- 0.48 -- -28.76 8649 -- --
341.92 0.861 3.26 -- 0.482 0.831 -- -- 0.799 8.85 -30.19 6989 -- --
366.67 0.895 3.24 -0.403 -- -- -- -- 0.926 -- -- -- -- --
358.24 0.885 3.22 -- 0.477 -- -- -- 0.966 8.45 -- -- -- --
354.48 0.877 3.26 -- -- 0.848 -- -- 0.83 -- -12.27 5808 -- --
370.95 0.899 3.23 -- -- -- -- -- 0.97 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 279.84 temperature 25 4320 > th dose dependent rect. 7 3
2 280.11 temperature 25 14400 > th dose independent rect. 23 1
3 280.41 temperature 25 4320 > th dose dependent rect. 9 1
8 281.01 temperature 30 14400 > th dose independent rect. 12 3
9 281.17 temperature 30 14400 < th dose independent rect. 12 3
25 282.26 temperature 25 14400 < th dose independent rect. 23 2
30 282.43 temperature 30 14400 < th dose independent rect. 12 19
32 282.44 temperature 30 14400 < th dose independent rect. 12 7
33 282.44 temperature 30 14400 < th dose independent rect. 12 16
38 282.45 temperature 30 14400 < th dose independent rect. 12 11
41 282.46 temperature 30 14400 > th dose independent rect. 12 6
48 282.47 temperature 25 14400 > th dose dependent rect. 16 14
90 282.63 temperature 25 14400 > th dose dependent sin 13 NA
143 283.19 temperature 30 14400 < th dose independent sin 18 NA
185 283.36 temperature 25 14400 < th dose independent rect. 17 13
193 283.37 temperature 25 14400 > th dose independent rect. 17 13
198 283.38 temperature 30 14400 > th dose independent sin 17 NA
202 283.39 temperature 25 14400 < th dose independent rect. 19 8
206 283.42 temperature 25 14400 < th dose independent rect. 18 10
229 283.61 temperature 25 14400 > th dose independent rect. 18 10
258 283.70 temperature 25 14400 < th dose independent sin 11 NA
262 283.71 temperature 30 14400 < th dose independent rect. 2 15
269 283.72 temperature 30 14400 < th dose independent rect. 4 13
315 283.84 temperature 25 14400 > th dose independent sin 11 NA
365 283.96 temperature 30 14400 < th dose independent no NA NA
520 284.16 temperature 25 43200 > th dose independent rect. 4 7
549 284.23 temperature 25 43200 < th dose independent rect. 4 7
559 284.25 temperature 30 14400 > th dose independent no NA NA
813 285.12 temperature 25 14400 < th dose independent rect. 22 11
836 285.23 temperature 30 14400 > th dose independent rect. 16 1
840 285.24 temperature 25 43200 > th dose independent rect. 17 19
863 285.33 temperature 25 43200 > th dose independent sin 6 NA
876 285.37 temperature 25 43200 < th dose independent rect. 17 19
896 285.47 temperature 30 14400 < th dose independent rect. 16 1
952 285.57 temperature 25 43200 < th dose independent sin 6 NA