Os05g0182500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rad6 (Ubiquitin carrier protein).
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Os05g0182500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rad6 (Ubiquitin carrier protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.61 | 0.203 | 12 | -0.551 | 0.396 | 0.613 | 0.488 | 0.358 | -0.186 | 10.4 | 15.04 | 5781 | -- | -- |
| 18.67 | 0.201 | 12 | -0.62 | 0.395 | 0.552 | 0.436 | -- | -0.207 | 10.3 | 16.4 | 5778 | -- | -- |
| 19.47 | 0.207 | 12 | -0.353 | 0.363 | 0.771 | -- | 0.823 | -0.151 | 7.56 | 15.04 | 5781 | -- | -- |
| 19.58 | 0.206 | 12 | -0.598 | 0.394 | 0.542 | -- | -- | -0.206 | 10.1 | 17.11 | 5802 | -- | -- |
| 26.48 | 0.241 | 12 | -0.354 | -- | 0.749 | -- | 0.743 | -0.144 | -- | 13.93 | 5882 | -- | -- |
| 25.55 | 0.237 | 12 | -0.33 | 0.388 | -- | 0.446 | -- | -0.0706 | 10.2 | -- | -- | -- | -- |
| 26.32 | 0.24 | 12 | -0.313 | 0.388 | -- | -- | -- | -0.0701 | 9.96 | -- | -- | -- | -- |
| 26.87 | 0.242 | 12 | -0.452 | -- | 0.675 | -- | -- | -0.172 | -- | 17.11 | 5802 | -- | -- |
| 24.4 | 0.231 | 12 | -- | 0.359 | 0.519 | -- | -- | -0.11 | 8.03 | 21.1 | 1536 | -- | -- |
| 35.37 | 0.278 | 12 | -0.318 | -- | -- | -- | -- | -0.0702 | -- | -- | -- | -- | -- |
| 28.9 | 0.251 | 12 | -- | 0.389 | -- | -- | -- | -0.0352 | 10 | -- | -- | -- | -- |
| 31.43 | 0.262 | 12 | -- | -- | 0.513 | -- | -- | -0.105 | -- | 21.1 | 1536 | -- | -- |
| 38.04 | 0.288 | 12 | -- | -- | -- | -- | -- | -0.035 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.73 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 6 | 16.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 10 | 16.16 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 13 | 16.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 14 | 16.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 15 | 16.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 37 | 16.62 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 39 | 16.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 8 |
| 60 | 16.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 71 | 16.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 82 | 16.96 | temperature | 30 | 720 | < th | dose dependent | sin | 6 | NA |
| 93 | 17.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 129 | 17.13 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 175 | 17.30 | temperature | 25 | 10 | > th | dose dependent | sin | 9 | NA |
| 222 | 17.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 353 | 17.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 5 | 21 |
| 366 | 17.84 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 391 | 17.90 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 5 |
| 417 | 17.94 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 424 | 17.95 | temperature | 15 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 431 | 17.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 452 | 18.00 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 530 | 18.13 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 5 |
| 534 | 18.14 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 5 |
| 621 | 18.24 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 3 |
| 699 | 18.30 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 712 | 18.31 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 740 | 18.33 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 13 |
| 742 | 18.33 | temperature | 10 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 744 | 18.33 | temperature | 30 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 758 | 18.34 | temperature | 30 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 785 | 18.35 | temperature | 10 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 801 | 18.36 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 802 | 18.36 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 906 | 18.39 | radiation | 1 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 968 | 18.40 | temperature | 10 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 969 | 18.40 | temperature | 25 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 971 | 18.40 | temperature | 25 | 43200 | < th | dose dependent | rect. | 21 | 1 |