Os03g0791800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rad6 (Ubiquitin carrier protein).
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Os03g0791800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Rad6 (Ubiquitin carrier protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.78 | 0.234 | 15.4 | 0.2 | 0.822 | -0.778 | 0.172 | -0.406 | 0.404 | 1.54 | 19.2 | 6103 | -- | -- |
| 24.97 | 0.233 | 15.4 | 0.173 | 0.814 | -0.715 | 0.221 | -- | 0.377 | 1.52 | 19 | 6132 | -- | -- |
| 24.79 | 0.232 | 15.4 | 0.208 | 0.829 | -0.806 | -- | -0.454 | 0.406 | 1.52 | 19 | 6109 | -- | -- |
| 25.02 | 0.233 | 15.4 | 0.17 | 0.817 | -0.685 | -- | -- | 0.4 | 1.53 | 18.9 | 6128 | -- | -- |
| 64.79 | 0.375 | 15.4 | 0.258 | -- | -0.781 | -- | -0.223 | 0.416 | -- | 19.6 | 3832 | -- | -- |
| 31.25 | 0.262 | 15.4 | 0.613 | 0.826 | -- | 0.201 | -- | 0.567 | 1.54 | -- | -- | -- | -- |
| 31.41 | 0.262 | 15.4 | 0.606 | 0.826 | -- | -- | -- | 0.566 | 1.53 | -- | -- | -- | -- |
| 64.33 | 0.374 | 15.4 | 0.417 | -- | -0.525 | -- | -- | 0.448 | -- | 21.49 | 2471 | -- | -- |
| 25.73 | 0.236 | 15.4 | -- | 0.813 | -0.703 | -- | -- | 0.402 | 1.42 | 19 | 6128 | -- | -- |
| 73.17 | 0.4 | 15.4 | 0.639 | -- | -- | -- | -- | 0.584 | -- | -- | -- | -- | -- |
| 41.1 | 0.3 | 15.4 | -- | 0.836 | -- | -- | -- | 0.498 | 1.55 | -- | -- | -- | -- |
| 66.53 | 0.38 | 15.4 | -- | -- | -0.749 | -- | -- | 0.353 | -- | 20.75 | 2479 | -- | -- |
| 83.95 | 0.428 | 15.4 | -- | -- | -- | -- | -- | 0.513 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.64 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 3 | 23.74 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 6 | 23.83 | temperature | 25 | 270 | < th | dose dependent | sin | 11 | NA |
| 62 | 24.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 82 | 24.49 | temperature | 25 | 720 | < th | dose dependent | sin | 16 | NA |
| 89 | 24.54 | temperature | 25 | 10 | < th | dose dependent | sin | 9 | NA |
| 117 | 24.65 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 7 |
| 125 | 24.67 | humidity | 60 | 43200 | < th | dose dependent | rect. | 4 | 5 |
| 129 | 24.68 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 136 | 24.69 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 142 | 24.70 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 15 |
| 144 | 24.70 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 18 |
| 146 | 24.71 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 12 |
| 153 | 24.72 | humidity | 60 | 43200 | < th | dose dependent | sin | 5 | NA |
| 176 | 24.74 | temperature | 25 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 178 | 24.74 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 9 |
| 204 | 24.77 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 208 | 24.77 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 8 |
| 272 | 24.83 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 273 | 24.83 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 379 | 24.99 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 397 | 25.00 | humidity | 60 | 43200 | < th | dose dependent | rect. | 1 | 21 |
| 405 | 25.01 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 433 | 25.01 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 435 | 25.01 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 507 | 25.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 10 |
| 538 | 25.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 11 |
| 578 | 25.09 | humidity | 60 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 589 | 25.10 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 20 |
| 590 | 25.10 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 605 | 25.11 | humidity | 60 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 606 | 25.11 | temperature | 20 | 270 | < th | dose independent | rect. | 21 | 9 |
| 607 | 25.11 | humidity | 60 | 43200 | > th | dose independent | rect. | 24 | 10 |
| 621 | 25.12 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 8 |
| 635 | 25.13 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 2 |
| 644 | 25.14 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 651 | 25.14 | temperature | 20 | 14400 | > th | dose dependent | rect. | 8 | 4 |
| 661 | 25.15 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 684 | 25.16 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 746 | 25.19 | radiation | 30 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 750 | 25.19 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 789 | 25.21 | temperature | 20 | 10 | < th | dose independent | sin | 9 | NA |
| 820 | 25.22 | temperature | 20 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 838 | 25.23 | humidity | 60 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 856 | 25.24 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 897 | 25.26 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 901 | 25.26 | humidity | 60 | 43200 | < th | dose independent | rect. | 20 | 16 |
| 919 | 25.27 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 920 | 25.27 | humidity | 60 | 43200 | < th | dose independent | sin | 9 | NA |
| 925 | 25.27 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 13 |
| 938 | 25.28 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 947 | 25.28 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 11 |
| 982 | 25.29 | humidity | 50 | 43200 | > th | dose independent | rect. | 13 | 9 |