Os07g0166800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Rad6 (Ubiquitin carrier protein).
FiT-DB / Search/ Help/ Sample detail
|
Os07g0166800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Rad6 (Ubiquitin carrier protein).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.41 | 0.196 | 13.3 | -0.639 | 0.774 | -0.416 | 0.216 | -1.21 | -0.258 | 7.55 | 20.4 | 1444 | -- | -- |
| 19.55 | 0.206 | 13.3 | -0.435 | 0.78 | -0.229 | 0.26 | -- | -0.172 | 7.39 | 24.12 | 1212 | -- | -- |
| 17.53 | 0.195 | 13.3 | -0.64 | 0.775 | -0.409 | -- | -1.2 | -0.258 | 7.57 | 20.5 | 1429 | -- | -- |
| 19.6 | 0.206 | 13.3 | -0.449 | 0.799 | -0.228 | -- | -- | -0.192 | 7.48 | 24.5 | 1262 | -- | -- |
| 33.18 | 0.268 | 13.3 | -0.382 | -- | -0.608 | -- | -0.206 | -0.0894 | -- | 25.8 | 529 | -- | -- |
| 21.51 | 0.217 | 13.3 | -0.53 | 0.777 | -- | 0.239 | -- | -0.269 | 7.59 | -- | -- | -- | -- |
| 21.66 | 0.218 | 13.3 | -0.524 | 0.777 | -- | -- | -- | -0.269 | 7.61 | -- | -- | -- | -- |
| 33.24 | 0.269 | 13.3 | -0.333 | -- | -0.624 | -- | -- | -0.0728 | -- | 25.85 | 551 | -- | -- |
| 20.74 | 0.212 | 13.3 | -- | 0.776 | -0.421 | -- | -- | -0.0553 | 7.55 | 23.1 | 47520 | -- | -- |
| 54.07 | 0.344 | 13.3 | -0.513 | -- | -- | -- | -- | -0.258 | -- | -- | -- | -- | -- |
| 28.9 | 0.251 | 13.3 | -- | 0.773 | -- | -- | -- | -0.211 | 7.65 | -- | -- | -- | -- |
| 36.06 | 0.28 | 13.3 | -- | -- | -0.672 | -- | -- | -0.0233 | -- | 25.86 | 554 | -- | -- |
| 61.01 | 0.365 | 13.3 | -- | -- | -- | -- | -- | -0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 16 |
| 5 | 17.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 11 |
| 15 | 17.57 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 16 | 17.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 9 |
| 24 | 17.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 16 |
| 48 | 17.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 9 |
| 50 | 17.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 64 | 17.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 76 | 17.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 20 |
| 86 | 17.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 91 | 17.61 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 92 | 17.62 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 100 | 17.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 17 |
| 120 | 17.63 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 174 | 17.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 196 | 17.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 21 |
| 199 | 17.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 200 | 17.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 223 | 17.66 | temperature | 30 | 270 | < th | dose dependent | rect. | 18 | 22 |
| 226 | 17.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 243 | 17.68 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 267 | 17.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 274 | 17.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 316 | 17.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 368 | 17.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 372 | 17.75 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 436 | 17.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 437 | 17.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 18 |
| 449 | 17.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 5 |
| 538 | 17.88 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 13 |
| 569 | 17.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 580 | 17.90 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 582 | 17.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 9 |
| 583 | 17.90 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 667 | 17.94 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 672 | 17.94 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 699 | 17.95 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 727 | 17.96 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 749 | 17.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 918 | 18.02 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 23 |