Os01g0673600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquitin-conjugating enzyme E2.
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Os01g0673600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin-conjugating enzyme E2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.45 | 0.172 | 13.4 | 0.562 | 0.207 | -0.337 | 0.194 | -0.948 | 0.175 | 17.9 | 20.93 | 106 | -- | -- |
| 14.64 | 0.178 | 13.4 | 0.555 | 0.196 | -0.211 | 0.22 | -- | 0.17 | 18.7 | 17.1 | 112 | -- | -- |
| 13.54 | 0.171 | 13.4 | 0.56 | 0.208 | -0.334 | -- | -0.931 | 0.175 | 18 | 21.18 | 106 | -- | -- |
| 14.73 | 0.179 | 13.4 | 0.55 | 0.211 | -0.243 | -- | -- | 0.172 | 18.1 | 14.83 | 126 | -- | -- |
| 15.68 | 0.184 | 13.4 | 0.552 | -- | -0.33 | -- | -0.925 | 0.173 | -- | 26.4 | 90 | -- | -- |
| 15.35 | 0.184 | 13.4 | 0.559 | 0.205 | -- | 0.298 | -- | 0.159 | 20.2 | -- | -- | -- | -- |
| 15.61 | 0.185 | 13.4 | 0.55 | 0.206 | -- | -- | -- | 0.16 | 19.9 | -- | -- | -- | -- |
| 16.7 | 0.19 | 13.4 | 0.542 | -- | -0.232 | -- | -- | 0.159 | -- | 16.94 | 55 | -- | -- |
| 22.44 | 0.221 | 13.4 | -- | 0.205 | -0.284 | -- | -- | 0.106 | 18.7 | 38.84 | 159 | -- | -- |
| 17.93 | 0.198 | 13.4 | 0.548 | -- | -- | -- | -- | 0.157 | -- | -- | -- | -- | -- |
| 23.6 | 0.227 | 13.4 | -- | 0.203 | -- | -- | -- | 0.0984 | 20.1 | -- | -- | -- | -- |
| 24.23 | 0.229 | 13.4 | -- | -- | -0.358 | -- | -- | 0.0963 | -- | 37.42 | 65 | -- | -- |
| 25.86 | 0.237 | 13.4 | -- | -- | -- | -- | -- | 0.0962 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.58 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 15 |
| 3 | 12.59 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 6 | 12.62 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 20 | 12.72 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 23 | 12.73 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 8 |
| 27 | 12.75 | temperature | 25 | 90 | > th | dose dependent | sin | 5 | NA |
| 38 | 12.81 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 44 | 12.82 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 54 | 12.84 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 61 | 12.86 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 67 | 12.88 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 79 | 12.91 | radiation | 30 | 270 | > th | dose dependent | rect. | 9 | 2 |
| 190 | 13.05 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 14 |
| 200 | 13.06 | radiation | 30 | 270 | > th | dose dependent | sin | 10 | NA |
| 295 | 13.12 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 14 |
| 304 | 13.13 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 500 | 13.26 | temperature | 30 | 90 | > th | dose independent | sin | 5 | NA |
| 501 | 13.26 | temperature | 30 | 90 | < th | dose independent | sin | 6 | NA |
| 651 | 13.33 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 656 | 13.34 | atmosphere | 1005 | 720 | > th | dose independent | rect. | 5 | 10 |
| 687 | 13.35 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 694 | 13.36 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 2 |
| 781 | 13.38 | radiation | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 788 | 13.39 | radiation | 20 | 90 | > th | dose dependent | sin | 4 | NA |
| 803 | 13.39 | radiation | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 844 | 13.41 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 867 | 13.42 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 8 | 8 |
| 903 | 13.43 | radiation | 40 | 270 | > th | dose independent | sin | 10 | NA |
| 950 | 13.45 | radiation | 40 | 270 | < th | dose independent | sin | 10 | NA |
| 959 | 13.45 | atmosphere | 1010 | 720 | < th | dose dependent | rect. | 9 | 1 |