BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0654000 Os06g0654000|AK067618
(944 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0654000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 1847 0.0
Os02g0244300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 382 e-106
Os08g0478500 Peptidase C19, ubiquitin carboxyl-terminal hyd... 362 e-100
Os09g0464400 Peptidase C19, ubiquitin carboxyl-terminal hyd... 348 1e-95
Os06g0184300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 235 1e-61
Os02g0795000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 227 3e-59
Os05g0510300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 187 2e-47
Os04g0647300 Similar to Ubiquitin-specific protease 22 150 4e-36
Os03g0190800 Similar to Ubiquitin carboxyl-terminal hydrola... 137 3e-32
Os04g0452400 Similar to Ubiquitin carboxyl-terminal hydrola... 137 5e-32
Os02g0573400 Peptidase C19, ubiquitin carboxyl-terminal hyd... 130 4e-30
Os07g0661300 Similar to Ubiquitin-specific protease 24 104 3e-22
Os11g0545300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 90 6e-18
Os10g0160000 Similar to Ubiquitin carboxyl-terminal hydrola... 89 1e-17
Os12g0621000 Similar to Ubiquitin-specific protease 8 (Frag... 88 4e-17
Os03g0192800 Similar to Ubiquitin-specific protease 26 87 5e-17
Os12g0489100 Similar to Ubiquitin-specific protease 12 80 5e-15
Os09g0505100 Peptidase C19, ubiquitin carboxyl-terminal hyd... 77 8e-14
Os07g0160000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 74 6e-13
>Os06g0654000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 944
Score = 1847 bits (4783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 888/944 (94%), Positives = 888/944 (94%)
Query: 1 SQGCQSKHWQSGHKFKCKQMKKSSPADKLSGGGEEDRNKLSGFGPISLVPARRKLNKVIF 60
SQGCQSKHWQSGHKFKCKQMKKSSPADKLSGGGEEDRNKLSGFGPISLVPARRKLNKVIF
Sbjct: 1 SQGCQSKHWQSGHKFKCKQMKKSSPADKLSGGGEEDRNKLSGFGPISLVPARRKLNKVIF 60
Query: 61 PYDEFLKLCNWRDLDYLPCGLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYKRH 120
PYDEFLKLCNWRDLDYLPCGLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYKRH
Sbjct: 61 PYDEFLKLCNWRDLDYLPCGLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYKRH 120
Query: 121 EDWCFLCELQCHIQRASESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQS 180
EDWCFLCELQCHIQRASESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQS
Sbjct: 121 EDWCFLCELQCHIQRASESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQS 180
Query: 181 ACLDEFGGEKAVDPSTQETTLIQHIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIHGDA 240
ACLDEFGGEKAVDPSTQETTLIQHIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIHGDA
Sbjct: 181 ACLDEFGGEKAVDPSTQETTLIQHIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIHGDA 240
Query: 241 DSLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQSGRFGK 300
DSLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQSGRFGK
Sbjct: 241 DSLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQSGRFGK 300
Query: 301 LNKRVTFPMKLDLTPYMSSTDGSDQYDLYAVVVHLDMLNASFFGHYICYIKNYRGRWYKI 360
LNKRVTFPMKLDLTPYMSSTDGSDQYDLYAVVVHLDMLNASFFGHYICYIKNYRGRWYKI
Sbjct: 301 LNKRVTFPMKLDLTPYMSSTDGSDQYDLYAVVVHLDMLNASFFGHYICYIKNYRGRWYKI 360
Query: 361 DDCKVMAVDEEEVHAQGAYMLLYSRRTARPRPLIAVEELMKQQQQLKVCPLNGQNHLIQE 420
DDCKVMAVDEEEVHAQGAYMLLYSRRTARPRPLIAVEELMKQQQQLKVCPLNGQNHLIQE
Sbjct: 361 DDCKVMAVDEEEVHAQGAYMLLYSRRTARPRPLIAVEELMKQQQQLKVCPLNGQNHLIQE 420
Query: 421 DVPLEGVPSLKPSEDLEVDFESNNKSLHTMDREPDLDFHVSFDRDKFTNNDIMHPPVSTV 480
DVPLEGVPSLKPSEDLEVDFESNNKSLHTMDREPDLDFHVSFDRDKFTNNDIMHPPVSTV
Sbjct: 421 DVPLEGVPSLKPSEDLEVDFESNNKSLHTMDREPDLDFHVSFDRDKFTNNDIMHPPVSTV 480
Query: 481 SHALDENTRGDSGFPLEESNTMGSVQFGNSTYETSLVHSPAEQCEEPASCIDSVDYMEID 540
SHALDENTRGDSGFPLEESNTMGSVQFGNSTYETSLVHSPAEQCEEPASCIDSVDYMEID
Sbjct: 481 SHALDENTRGDSGFPLEESNTMGSVQFGNSTYETSLVHSPAEQCEEPASCIDSVDYMEID 540
Query: 541 TEAGVKVERWSRPALGDSVGVMGNGTLVPALENGLAGKPIPGFPDKPSRINSFFAEGCQT 600
TEAGVKVERWSRPALGDSVGVMGNGTLVPALENGLAGKPIPGFPDKPSRINSFFAEGCQT
Sbjct: 541 TEAGVKVERWSRPALGDSVGVMGNGTLVPALENGLAGKPIPGFPDKPSRINSFFAEGCQT 600
Query: 601 GDNGAGSSQELNGHCNGEPSCPEQGVLTNGGNTPSPSTQCYENKFATSTNGNYSIGNGDT 660
GDNGAGSSQELNGHCNGEPSCPEQGVLTNGGNTPSPSTQCYENKFATSTNGNYSIGNGDT
Sbjct: 601 GDNGAGSSQELNGHCNGEPSCPEQGVLTNGGNTPSPSTQCYENKFATSTNGNYSIGNGDT 660
Query: 661 LSSSNSLHAGKQNAGFTYNGFNPKPYKEPSGSNTYLNNTCNGKPSEDNHNKCAPNLPAKD 720
LSSSNSLHAGKQNAGFTYNGFNPKPYKEPSGSNTYLNNTCNGKPSEDNHNKCAPNLPAKD
Sbjct: 661 LSSSNSLHAGKQNAGFTYNGFNPKPYKEPSGSNTYLNNTCNGKPSEDNHNKCAPNLPAKD 720
Query: 721 CQGGMPFLHRGFLLRPCSRGNPGKCDDGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTP 780
CQGGMPFLHRGFLLRPCSRGNPGKCDDGL TP
Sbjct: 721 CQGGMPFLHRGFLLRPCSRGNPGKCDDGLSISNGTSSSFVSSNSKSSNISSSRNGEGGTP 780
Query: 781 FLSPSFRTNHCRESAAMDTSASSVHDLKTSYNISLEQKSIGAAVPSDLIKESWGEDGTTF 840
FLSPSFRTNHCRESAAMDTSASSVHDLKTSYNISLEQKSIGAAVPSDLIKESWGEDGTTF
Sbjct: 781 FLSPSFRTNHCRESAAMDTSASSVHDLKTSYNISLEQKSIGAAVPSDLIKESWGEDGTTF 840
Query: 841 GTVYQQRATSVDNVSSRHDENGHVILXXXXXXXXXXXXXXXXILDMNXXXXXXXXXXXTM 900
GTVYQQRATSVDNVSSRHDENGHVIL ILDMN TM
Sbjct: 841 GTVYQQRATSVDNVSSRHDENGHVILGANNSSYGGENGSNNGILDMNSSSSQRDAASSTM 900
Query: 901 MASEKGIGPKTADQVNYISDALEHDGLRRRLTSNFPDQNGIDAQ 944
MASEKGIGPKTADQVNYISDALEHDGLRRRLTSNFPDQNGIDAQ
Sbjct: 901 MASEKGIGPKTADQVNYISDALEHDGLRRRLTSNFPDQNGIDAQ 944
>Os02g0244300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 975
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 187/346 (54%), Positives = 243/346 (70%), Gaps = 4/346 (1%)
Query: 54 KLNKVIFPYDEFLKLCNWRDLDYLPCGLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHS 113
K +KV+FPY++ +K + P GL NCGNSC+AN VLQCL CT+PL YLL HS
Sbjct: 416 KRSKVLFPYEDLVKFFQYEVRGISPRGLFNCGNSCYANAVLQCLMCTKPLMIYLLLRLHS 475
Query: 114 RECYKRHEDWCFLCELQCHIQRASESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRF 173
++C + +WC +CEL+ + ES P +P ILS+L NIG LG G QEDAHEF+R
Sbjct: 476 KDCCSK--NWCLMCELEQYASTLRESGGPVSPSRILSNLRNIGCRLGGGSQEDAHEFLRH 533
Query: 174 AIDKMQSACLDEFGGEKAVDPSTQETTLIQHIFGGRLQSQVQCTACGMVSNRYENMMDLT 233
+ MQ ACLD GGEK V+ S QETTLIQ +FGGRL+S+V+C C S RYEN+MDLT
Sbjct: 534 LVMSMQGACLDGLGGEKQVEASLQETTLIQQMFGGRLKSKVKCLRCYHESERYENIMDLT 593
Query: 234 VEIHGDADSLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRF 293
+EIHG +SL++ L +FTA E LDG+N YKC CS YVKA+K+L+V++ PNILT+ LKRF
Sbjct: 594 LEIHGWVESLQDALTQFTAPEDLDGENMYKCGRCSAYVKARKQLSVHEVPNILTVVLKRF 653
Query: 294 QSGRFGKLNKRVTFPMKLDLTPYMSST-DGSDQYDLYAVVVHLDMLNASFFGHYICYIKN 352
Q+G++GK+NK VTFP LD+ P+++ D Y LYAVVVH+D NASF GHYI Y+K+
Sbjct: 654 QTGKYGKINKCVTFPDMLDMVPFVTGAGDNPPLYFLYAVVVHVDTENASFSGHYISYVKD 713
Query: 353 YRGRWYKIDDCKVMAVDEEEVHAQGAYMLLYSRRTARPRPLIAVEE 398
+G W +IDD +V AV +V ++GAYML Y R RP P I +E+
Sbjct: 714 MQGTWLRIDDSEVQAVSLNQVMSEGAYMLFYMRSFPRP-PKIYIEK 758
>Os08g0478500 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 978
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/351 (50%), Positives = 238/351 (67%), Gaps = 9/351 (2%)
Query: 60 FPYDEFLKLCNWRDLDYLPCGLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYKR 119
FPY+ F+KL + ++ P GL N GNSC+AN VLQCL TRPL +YLLG HS+ C K+
Sbjct: 433 FPYELFIKL--YEKVELQPFGLHNLGNSCYANAVLQCLMFTRPLTSYLLGGLHSKNCSKK 490
Query: 120 HEDWCFLCELQCHIQRASESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQ 179
+WCF+CE + + + +P ILSHLP+IG + G G+QEDAHEF+R+AID MQ
Sbjct: 491 --EWCFMCEFEKLVGEGRQGKIALSPTGILSHLPDIGSSFGPGKQEDAHEFLRYAIDAMQ 548
Query: 180 SACLDEFGGEKAVDPSTQETTLIQHIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIHGD 239
S C+ E + +ETTL+Q IFGG L+S+++CT C S ++E ++DLTVEI GD
Sbjct: 549 SVCMKE-ARKSGTHRLHEETTLMQLIFGGYLRSKIRCTRCDATSEQHERILDLTVEIDGD 607
Query: 240 ADSLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQSGRFG 299
SLE L++FT+ E LDGDNKYKC C + +A+K+LT+ +APN+LTI LKR+QSG+FG
Sbjct: 608 ISSLEGALERFTSTEVLDGDNKYKCSRCKSHERAKKKLTISEAPNVLTIALKRYQSGKFG 667
Query: 300 KLNKRVTFPMKLDLTPYMS--STDGSDQYDLYAVVVHLDMLNASFFGHYICYIKNYRGRW 357
K+NK + FP L+L YMS + D S Y LYAVVVH D++NA+F GHY+CY+K+ G+W
Sbjct: 668 KINKAIRFPETLNLQRYMSPKADDTSPVYSLYAVVVHHDIMNAAFSGHYVCYVKDTHGKW 727
Query: 358 YKIDDCKVMAVDEEEVHAQGAYMLLYSRRTARPRPLIAVEELMKQQQQLKV 408
YK DD +V V E V ++ AYMLLY+R PR +V + Q +V
Sbjct: 728 YKTDDSQVKPVSLENVMSKCAYMLLYAR--CSPRAPSSVRPALMAQDPARV 776
>Os09g0464400 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 918
Score = 348 bits (893), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 174/357 (48%), Positives = 239/357 (66%), Gaps = 15/357 (4%)
Query: 59 IFPYDEFLKLCNWRDLDYLPCGLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSREC-- 116
+FPY+ F+KL N+ ++ P GL+N GNSC+AN VLQCL+ TRPL AYL HSR C
Sbjct: 362 LFPYEHFVKLYNFDKVELRPFGLVNLGNSCYANAVLQCLAFTRPLTAYLTEGLHSRNCNL 421
Query: 117 ---------YKRHEDWCFLCELQCHIQRASESMHPFAPKNILSHLPNIGGNLGFGRQEDA 167
+ ++WCF+CE + I +P ILSHL +IG + G GR+EDA
Sbjct: 422 ILSQNCVTYHGSKKEWCFMCEFEKLILEGRRGKSHLSPTGILSHLRDIGSSFGPGREEDA 481
Query: 168 HEFMRFAIDKMQSACLDEFGGEKAVDPSTQETTLIQHIFGGRLQSQVQCTACGMVSNRYE 227
HEF+R+AID MQSA + E + V +ETTL+Q IFGG L+S+++CT C S + E
Sbjct: 482 HEFLRYAIDTMQSASMKE-AKKNGVYGLPEETTLVQLIFGGYLRSKIKCTMCQGSSEQCE 540
Query: 228 NMMDLTVEIHGDADSLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILT 287
++DLTVEI GD ++LEE L +FT+ E LDGDN+Y C C Y +A+K+LT+ +APNILT
Sbjct: 541 RILDLTVEIDGDINTLEEALHRFTSTEILDGDNRYNCSRCKSYERAKKKLTISEAPNILT 600
Query: 288 ITLKRFQSGRFGKLNKRVTFPMKLDLTPYMSSTDG-SDQYDLYAVVVHLDMLNASFFGHY 346
I LKR+QSG FGK+NK V F L+L+ YMS+ D S Y LYAVVVH D++NA+F GHY
Sbjct: 601 IALKRYQSGNFGKINKAVRFTEYLNLSNYMSTADDISPVYQLYAVVVHHDVMNAAFSGHY 660
Query: 347 ICYIKNYRGRWYKIDDCKVMAVDEEEVHAQGAYMLLYSRRTARPRPLIAVEELMKQQ 403
+CY+K+ +G+W+K+DD +V V E+V ++ AYML Y+R PR +V +++ Q
Sbjct: 661 VCYVKDTQGKWHKMDDSQVKPVSLEKVLSKCAYMLFYAR--CSPRAPNSVRKMILAQ 715
>Os06g0184300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 899
Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 183/324 (56%), Gaps = 12/324 (3%)
Query: 74 LDYLPCGLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYKRHEDWCFLCELQCHI 133
L + GL N GN+C+ N VLQCL+ T P AAYL H C R +C LC LQ H+
Sbjct: 54 LGRIGAGLQNLGNTCYLNSVLQCLTYTEPFAAYLQSGKHKSSC--RTAGFCALCALQNHV 111
Query: 134 QRASESMHPFA-PKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQSACLDEFGGEKAV 192
+ A +S P I+ +L I + RQEDAHE M ++ M CL G +
Sbjct: 112 KTALQSTGKIVTPSQIVKNLRCISRSFRNSRQEDAHELMVNLLESMHKCCLP--SGVPSE 169
Query: 193 DPSTQETTLIQHIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIHGDADSLEECLDKFTA 252
PS E +L+ IFGGRL+SQV+CT C SN+++ +DL+++I G A SL L FTA
Sbjct: 170 SPSAYEKSLVHKIFGGRLRSQVKCTQCSHCSNKFDPFLDLSLDI-GKATSLVRALQNFTA 228
Query: 253 VEWLDGDNK-YKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQS-GRFGKLNKRVTFPMK 310
E LDG K Y+C C V A+K+ T+ +AP +LTI LKRF K++K+V F
Sbjct: 229 EELLDGGEKQYQCQRCRKKVVAKKKFTIDKAPYVLTIHLKRFSPFNPREKIDKKVDFQPM 288
Query: 311 LDLTPYMSSTDGSD-QYDLYAVVVHLDMLNASFFGHYICYIKNYRGRWYKIDDCKVMAVD 369
LDL P++S + G+D +Y LY V+VH S GHY C+++ G W+ +DD +V V
Sbjct: 289 LDLKPFISDSKGADFKYSLYGVLVHAGWNTQS--GHYYCFVRTSSGMWHNLDDNQVRQVR 346
Query: 370 EEEVHAQGAYMLLYSR-RTARPRP 392
E +V Q AYML Y R R P P
Sbjct: 347 EADVLRQKAYMLFYVRDRVGNPTP 370
>Os02g0795000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 1185
Score = 227 bits (579), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 131/320 (40%), Positives = 181/320 (56%), Gaps = 11/320 (3%)
Query: 74 LDYLPCGLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYKRHEDWCFLCELQCHI 133
L + GL N GN+C+ N VLQCL+ T P AYL +H C R +C LC LQ H+
Sbjct: 81 LRRIGAGLQNFGNTCYLNSVLQCLTYTEPFVAYLQSGEHMSSC--RTIGFCALCALQRHV 138
Query: 134 QRASESM-HPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQSACLDEFGGEKAV 192
A +S P +I+ +L I + RQEDAHE M ++ M CL G +
Sbjct: 139 NSALQSTGKILRPVHIVRNLRCISRSFRISRQEDAHELMVSLLESMHKCCLPS--GVPSG 196
Query: 193 DPSTQETTLIQHIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIHGDADSLEECLDKFTA 252
PS E +L+ IFGG L+SQV+CT C SN+++ +DL++EI +A +L + L FTA
Sbjct: 197 SPSAYEKSLVHRIFGGLLRSQVRCTTCSHCSNKFDPFLDLSLEI-ANAATLVKALQHFTA 255
Query: 253 VEWLDGDNK-YKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQS-GRFGKLNKRVTFPMK 310
E LDG K Y C+ C V A+KR + +AP++LTI LKRF K++K+V F
Sbjct: 256 EELLDGGEKQYNCEHCRQKVVAKKRFMIEKAPSVLTIHLKRFSPFNPRHKIDKKVQFQPT 315
Query: 311 LDLTPYMSSTDGSD-QYDLYAVVVHLDMLNASFFGHYICYIKNYRGRWYKIDDCKVMAVD 369
L+L PY+S+ +G + +Y LY V+VH S GHY C+++ G W+ +DD KV V
Sbjct: 316 LNLKPYVSNPEGMEFKYSLYGVLVHAGWNTQS--GHYYCFVRTSSGIWHNLDDNKVYQVR 373
Query: 370 EEEVHAQGAYMLLYSRRTAR 389
E +V Q AYML Y R R
Sbjct: 374 EADVLRQKAYMLFYVRDRTR 393
>Os05g0510300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 644
Score = 187 bits (476), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 171/329 (51%), Gaps = 20/329 (6%)
Query: 81 LLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYK---RHEDWCFLCELQCHIQRA- 136
L N GN+C+ N VLQCL+ T PLA + L HS C K + C C ++ I R
Sbjct: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLCKKVLPNKDKECVFCVVERQISRLL 84
Query: 137 -SESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQSACL---DEFGGEKAV 192
+E+ +P I+ LP + +GRQEDAHEF+R+ ID +A L A
Sbjct: 85 RTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDACHTAGLRIRKRLPASNAN 144
Query: 193 DPSTQETTLIQ-------HIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIHGDADSLEE 245
+ +E +Q FGG L SQV+C C SN+ + +MD+++++ G ++S+ +
Sbjct: 145 GDAGEEEVRVQGPYMVMKETFGGALLSQVKCLTCKGESNKTDEIMDISLDLPG-SNSVAD 203
Query: 246 CLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQSGRFGKLNKRV 305
L +F E L+G NKY C+ C A+K+L V +AP +L I LKRF+ GK+N+ +
Sbjct: 204 ALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEGINGGKINRNI 263
Query: 306 TFPMKLDLTPYM--SSTDGSDQYDLYAVVVHLDMLNASFFGHYICYIKNYRGRWYKIDDC 363
F L L+ +M + D Y+L+ +VH S GHY Y+K+ GRWY +D
Sbjct: 264 EFKETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPDS--GHYYAYVKDAIGRWYCCNDS 321
Query: 364 KVMAVDEEEVHAQGAYMLLYSRRTARPRP 392
+ ++V ++ Y+L Y T +P
Sbjct: 322 HISPSSSQDVLSEKVYILFYILSTKTQKP 350
>Os04g0647300 Similar to Ubiquitin-specific protease 22
Length = 591
Score = 150 bits (379), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 102/374 (27%), Positives = 164/374 (43%), Gaps = 72/374 (19%)
Query: 80 GLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYKRH------------EDWCFLC 127
GL N GN+CF N VLQ L PL Y LG H+R R + C C
Sbjct: 212 GLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRYLCPRQTPMRRRSAEANDKAACLAC 271
Query: 128 EL-QCHIQRASESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQSACLDEF 186
+L + + S P++P L NL Q+DAHEF +D + D+
Sbjct: 272 DLDEIYSAAFSGERTPYSPAKFLYSWWQHASNLASYEQQDAHEFFISILDHIHENIKDD- 330
Query: 187 GGEKAVDPSTQETTLIQHIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIHG-------- 238
K++ + + +F G L+S V CT CG S +E MD+++++
Sbjct: 331 -QHKSLAQGHGDCCIAHRVFSGILRSDVTCTHCGFTSTTFEPCMDISLDLDAGYNNSLGV 389
Query: 239 -------------------DADSLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTV 279
+L CL++FT E LD + K+ C+ C + ++ K++++
Sbjct: 390 ANPKVHVRNGERSSGGTNTKVSTLMRCLERFTRAERLDAEQKFFCERCKERQESLKQMSI 449
Query: 280 YQAPNILTITLKRFQSGRFGKLNKRV----TFPMKLDLTPYMSS---------------- 319
+ P + +KRF+ K++++V FP LD+ PY+SS
Sbjct: 450 RRLPLVSCFHIKRFEHSSVKKMSRKVDHCLQFPFSLDMAPYLSSSILRSRFGNRIFPSEA 509
Query: 320 ------TDGSDQYDLYAVVVHLDMLNASFFGHYICYIKNYRGRWYKIDDCKVMAVDEEEV 373
++ S +++++AV++H L A GHY+ Y++ WYK DD V V+E V
Sbjct: 510 SDADSVSEFSSEFEIFAVIMHSGKLEA---GHYVTYLR-LNNHWYKCDDAWVTRVEEHTV 565
Query: 374 HAQGAYMLLYSRRT 387
AYML Y ++T
Sbjct: 566 RTSQAYMLFYVQKT 579
>Os03g0190800 Similar to Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15)
(Ubiquitin- specific processing protease 3) (AtUBP3)
Length = 366
Score = 137 bits (346), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 153/323 (47%), Gaps = 34/323 (10%)
Query: 80 GLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYKRHEDWCFLC--ELQCHIQRAS 137
GL N GN+C+ N VLQ L P LL + + ED C +L I
Sbjct: 24 GLENFGNTCYCNSVLQALYFCVPFREQLLEYYANNKSTGDVEDNMLTCLADLFSQISNQK 83
Query: 138 ESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQSACLDE--FGGEKAVDPS 195
+ APK + L +DAHEF+ F ++++ E E + S
Sbjct: 84 KKTGVIAPKRFIQRLKKQNEIFRSYMHQDAHEFLNFLLNELVDILEKESKVVAEPCENSS 143
Query: 196 TQET------------------TLIQHIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIH 237
++ TL+ F G L ++ +C C V++R E DL+++I
Sbjct: 144 LKKNSNGPINVQLNGTKKEPVPTLVHKCFQGILTNETRCLRCETVTDRDETFFDLSLDIE 203
Query: 238 GDADSLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRF---- 293
++ S+ CL F++ E L+ ++K+ CD C +AQKR+ + + PNIL I LKRF
Sbjct: 204 QNS-SITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPNILVIHLKRFKYIE 262
Query: 294 QSGRFGKLNKRVTFPMKLDLTPYMSSTDGSD-QYDLYAVVVHLDMLNASFFGHYICYIKN 352
Q GR+ KL+ RV FP++L L +++ D SD +Y L+AV+VH+ + GHYI +K+
Sbjct: 263 QLGRYKKLSYRVVFPLELKL---INTVDNSDLEYSLFAVLVHVG--SGPNHGHYISLVKS 317
Query: 353 YRGRWYKIDDCKVMAVDEEEVHA 375
+ W DD V DE V
Sbjct: 318 H-NHWLFFDDENVEMTDESMVQT 339
>Os04g0452400 Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)
(Ubiquitin- specific processing protease 4) (AtUBP4)
Length = 367
Score = 137 bits (344), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 97/317 (30%), Positives = 150/317 (47%), Gaps = 33/317 (10%)
Query: 80 GLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYKRHEDWCFLC--ELQCHIQRAS 137
GL N GN+C+ N VLQ L P LL + + E+ C +L + ++
Sbjct: 26 GLENFGNTCYCNSVLQALYFCIPFREKLLEYYANNKTPGDAEENLLTCLADLFMQVSQSK 85
Query: 138 ESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQSACLDEFGGEKAVDPSTQ 197
+ APK + + +DAHEF+ F ++++ E K S+
Sbjct: 86 KKTGVIAPKRFVQRVKKQNELFRSYMHQDAHEFLNFLLNELVDILEKESNAAKDSPQSSS 145
Query: 198 E--------------------TTLIQHIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIH 237
TL+ F G L ++ +C C V+ R E DL+V+I
Sbjct: 146 PEKVPNGPVQPLANGVRKEPPVTLVHKNFQGILTNETRCLRCETVTARDETFFDLSVDIE 205
Query: 238 GDADSLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRF---- 293
++ S+ CL F + E L+ ++K+ CD C +AQKR+ + +AP+IL I LKRF
Sbjct: 206 QNS-SITSCLKNFCSTETLNAEDKFFCDKCCSLQEAQKRMKIKKAPHILVIHLKRFKYIE 264
Query: 294 QSGRFGKLNKRVTFPMKLDLTPYMSSTDGSDQYDLYAVVVHLDMLNASFFGHYICYIKNY 353
Q GR+ KL+ RV FPM+L L+ +S D +Y L+AVVVH+ + GHY+ +K++
Sbjct: 265 QLGRYKKLSYRVVFPMELKLS---TSDDVDTEYSLFAVVVHVG--SGPNHGHYVSLVKSH 319
Query: 354 RGRWYKIDDCKVMAVDE 370
W DD V V+E
Sbjct: 320 -NHWLFFDDENVEMVEE 335
>Os02g0573400 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 415
Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 156/344 (45%), Gaps = 44/344 (12%)
Query: 80 GLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYKRHEDWCFLC--ELQCHIQRAS 137
GL N GN+C+ N VLQ L P LL + + + ED C +L I A
Sbjct: 73 GLENFGNTCYCNSVLQALYHCIPFREQLLEYYATYKNTEDSEDNLLTCLADLFSQITLAK 132
Query: 138 ESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQSACLDEFGGEKAVDPSTQ 197
+ APK + + +DAHEF F ++ + ++ + +T
Sbjct: 133 KRTGVLAPKRFVQRVRKQNELFRSYMHQDAHEFWNFLVNDIIDILEEDCRTANSSPETTP 192
Query: 198 E-------------------TTLIQHIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIHG 238
E TL+ F G L ++ +C C ++ + E DL++++
Sbjct: 193 EEVSNGAANALANGARERPLVTLVHRTFQGILTNETKCLMCDTITAKDETFFDLSIDVEQ 252
Query: 239 DADSLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRF----Q 294
++ SL CL F + E L+G++K+ CD CS +A KR+ + +AP++L I LKRF Q
Sbjct: 253 NS-SLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKYVEQ 311
Query: 295 SGRFGKLNKRVTFPMKLDLTPYMSSTDGSDQYDLYAVVVHLDMLNASFFGHYICYIKNYR 354
R KL+ RV +P++L L S D +Y L+AVVVH+ ++ GHY+ IK++
Sbjct: 312 LSRHKKLSYRVVYPLELKLGSM--SEDADCEYSLFAVVVHVG--SSPNHGHYVSQIKSH- 366
Query: 355 GRWYKIDDCKVMAVDEEEV---------HAQG----AYMLLYSR 385
G W DD V +E + H G Y+L Y R
Sbjct: 367 GNWLSFDDDTVQISEESTLQTFYGSSREHCGGNTDHGYILFYER 410
>Os07g0661300 Similar to Ubiquitin-specific protease 24
Length = 489
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 165/380 (43%), Gaps = 61/380 (16%)
Query: 61 PYDEFLKLCNWRDLD---YLPCGLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHS---R 114
P DE + N +D LP GL N GN CF N LQ L P L + + +
Sbjct: 115 PVDELVTSLNKKDFRNKPLLPHGLKNTGNICFLNSSLQALLSCWPFVQLLQNLRNQNIPK 174
Query: 115 ECYKRHEDWC-FLCELQC----HIQR-------ASESMHPFAPKNILSHL-PNI-GGNLG 160
Y + F+ + ++++ AS+S+ P +L + P++ G
Sbjct: 175 AGYPTLNAFIEFISQFDVLDDSNVKKDEKFATIASKSVIPSMFDTVLRNFTPDVPAGTAS 234
Query: 161 FGRQEDAHEFMRFAIDKMQSACLD----------------------EFGGEKAVDPSTQE 198
RQEDA EF+ FA+D+M + E G+K +
Sbjct: 235 RPRQEDAQEFLSFAMDRMHDELVKLNGNGSNSKEGMIVSSNDDDAWETVGKKNKSAIMRS 294
Query: 199 TTLI----QHIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIHGDA-DSLEECLDKFTAV 253
+ + IFGG+LQS V+ T S + + ++I DA L++ L F A
Sbjct: 295 QSFVPSELTAIFGGQLQSCVKATG-NKASVTVQPFRLIHLDIFPDAVQKLDDALRLFAAP 353
Query: 254 EWLDGDNKYK-CDGCSDYVKAQKRLTVYQAPNILTITLKRFQSGRFG--KLNKRVTFPMK 310
E L+G Y+ G + V A+K + ++ I+ + LKRF G G KL K + FP++
Sbjct: 354 ESLEG---YRTAAGKAGLVTARKSVKIHSLSKIMILHLKRFSYGSHGCTKLFKPIHFPLE 410
Query: 311 LDLTPYMSSTDGSD-----QYDLYAVVVHLDMLNASFFGHYICYIKNYRGRWYKIDDCKV 365
L L+ + S+ S+ +Y+L A + HL N S GHY K+ G+W + DD V
Sbjct: 411 LVLSRDLLSSPSSEHMQSRRYELVATITHLGA-NPSR-GHYTADAKSASGQWLRFDDDNV 468
Query: 366 MAVDEEEVHAQGAYMLLYSR 385
V +V AY+L Y +
Sbjct: 469 TPVSLNKVLHDQAYVLFYKQ 488
>Os11g0545300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 500
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/190 (32%), Positives = 101/190 (53%), Gaps = 16/190 (8%)
Query: 205 IFGGRLQSQVQCTACGMVSNRYENMMDLTVEI-HGD---ADSLEECLDKFTAVEWLDGDN 260
+FGG+ + C+ CGM+SN E+ L I H + A +LE+CLD VE D+
Sbjct: 1 MFGGKFRRSKVCSKCGMLSNSEEDFTLLMFNIPHREQVVAATLEDCLDHI--VEENVHDS 58
Query: 261 KYKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQS---GRFGKLNKRVTFPMKLDLTPYM 317
+C+ C + K+ + T ++ +++ I L+RF+ G + K+ + + FP +LD++PYM
Sbjct: 59 LSRCESCMNDQKSTSKCTFHETRDVV-IVLQRFEPLTLGGYRKIGELINFPTELDISPYM 117
Query: 318 SSTDGSDQ-YDLYAVVVHLDMLNASFFGHYICYIKNYRGRWYKIDDCKVMAVDEEEVHAQ 376
S Y+L+ ++VH GHY Y+K WY++ D V V+E V
Sbjct: 118 SGVVTDKHIYELFGIIVH---EGGVIGGHYRSYVKT--NCWYEVSDRDVKRVNENFVLGA 172
Query: 377 GAYMLLYSRR 386
AY+L Y+R+
Sbjct: 173 QAYILFYNRK 182
>Os10g0160000 Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15)
(Ubiquitin thiolesterase 12) (Ubiquitin-specific
processing protease 12) (Deubiquitinating enzyme 12)
Length = 931
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 9/153 (5%)
Query: 239 DADSLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQSGRF 298
+A +L CLD F E L D+ + C C+++ +A K+L +++ P IL + LKRF RF
Sbjct: 758 EAVNLFSCLDAFLKDEPLGPDDMWYCPRCTEHKQASKKLDLWRLPEILVVHLKRFSYSRF 817
Query: 299 --GKLNKRVTFPM-KLDLTPYMSSTDGSDQ---YDLYAVVVHLDMLNASFFGHYICYIKN 352
KL+ V FP+ LD++ Y + + G DQ Y+LYAV+ H + + Y ++
Sbjct: 818 MKNKLDTFVNFPIHDLDMSRYANHSRG-DQPPIYELYAVINHYGGMGGGHYSAYAKLVEE 876
Query: 353 YRGRWYKIDDCKVMAVDEEEVHAQGAYMLLYSR 385
WY DD V +V EE++ AY+L Y R
Sbjct: 877 --DSWYHFDDSHVSSVGEEDIRTSSAYLLFYRR 907
>Os12g0621000 Similar to Ubiquitin-specific protease 8 (Fragment)
Length = 864
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 11/151 (7%)
Query: 242 SLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQSGRF--G 299
SL CL+ F E L ++ + C GC ++ +A K+L +++ P IL I LKRF R+
Sbjct: 696 SLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTKN 755
Query: 300 KLNKRVTFPM-KLDLTPYMSS--TDGSDQYDLYAVVVHLDMLNASFFGHYICYIKNYRGR 356
KL V FP+ LDL+ Y+ S S+ Y LYA+ H + GHY Y+ + G+
Sbjct: 756 KLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSMGG---GHYTAYVY-HEGK 811
Query: 357 --WYKIDDCKVMAVDEEEVHAQGAYMLLYSR 385
WY DD V + EE + AY+L Y R
Sbjct: 812 KGWYDFDDRHVGPISEESIKTSAAYVLFYRR 842
>Os03g0192800 Similar to Ubiquitin-specific protease 26
Length = 311
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/227 (26%), Positives = 104/227 (45%), Gaps = 21/227 (9%)
Query: 70 NWRDLDYLPCGLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYKRHEDWCFLCEL 129
+ RD P GL N G +C+AN +LQCL + ++ + K H L L
Sbjct: 97 DLRDSTETPAGLTNLGATCYANSILQCLYMNTSFRLGIFSLEP--DILKMHPVLDQLARL 154
Query: 130 QCHIQRASESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQSACLDEFGGE 189
+ + + AP L N G Q+D+HEF+ + ++ G
Sbjct: 155 FAQLHSSKMAFIDSAPFIKTLELDN-------GVQQDSHEFLTLFLSLLE--------GS 199
Query: 190 KAVDPSTQETTLIQHIFGGRLQSQVQCTACGM---VSNRYENMMDLTVEIHGDADSLEEC 246
+ T++QH+F G + +C++CG S++ E+ +L + I G ++LE+
Sbjct: 200 LSHSKVPGARTIVQHLFRGSVSHVTRCSSCGRDSEASSKMEDFYELELNIKG-LNNLEQS 258
Query: 247 LDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRF 293
LD + + E LDG+N+Y C+ C V A + + + P ++ LKR+
Sbjct: 259 LDDYLSTEALDGENQYFCESCQKRVDATRCIKLRSLPPVVNFQLKRY 305
>Os12g0489100 Similar to Ubiquitin-specific protease 12
Length = 551
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 111/237 (46%), Gaps = 47/237 (19%)
Query: 202 IQHIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIHGDADSLEECLDKFTAVEWLDGDNK 261
I+ +F G + ++C SNR E+ DL +++ G +D + DK+ VE L+GDNK
Sbjct: 314 IEQLFEGHHINYIECINVDYKSNRKESFYDLQLDVKGCSD-VYASFDKYVEVERLEGDNK 372
Query: 262 YKCD--GCSDYVKAQKRLTVYQAPNILTITLKRFQ----SGRFGKLNKRVTFPMKLDLT- 314
Y + G D A+K + P +L + LKRF+ K+N R FP++LDL
Sbjct: 373 YHAEQYGLQD---AKKGVLFLDFPPVLQLQLKRFEYDYMRDTMVKINDRYEFPLQLDLDR 429
Query: 315 ---PYMS-STDGS--DQYDLYAVVVHLDMLNASFFGHYICYIK-NYRGRWYKIDDCKVMA 367
Y++ D S + Y L++V+VH ++ GHY +I+ +WYK DD +V
Sbjct: 430 DDGKYLAPDADRSIRNLYTLHSVLVHSGGVHG---GHYYAFIRPTLSDQWYKFDDERVTK 486
Query: 368 VD-----------EEEV---------------HAQGAYMLLYSRRTARPRPLIAVEE 398
D EEE+ AYML+Y R + + + + V+E
Sbjct: 487 EDTKKALEEQYGGEEELPQINPGFNNTPFKFTKYSNAYMLVYIRESDKDKIMCNVDE 543
>Os09g0505100 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein
Length = 1055
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 70/146 (47%), Gaps = 20/146 (13%)
Query: 257 DGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQS---GRFGKLNKRVTFPMKLDL 313
D N+ K +G + A +R+ + +AP +LTI L RF GRF KL V F LD+
Sbjct: 910 DNQNEQKENGKKVFRSAMRRILISKAPPVLTINLNRFSQDSHGRFKKLKGHVHFKETLDV 969
Query: 314 TPYM---SSTDGSDQYDLYAVVVHLDMLNASFFGHYICYIKNYR--GR---------WYK 359
P+M S + + Y L VV HL + A GHY+ Y++ + GR W+
Sbjct: 970 RPFMDPRSKENDNTTYRLVGVVEHLGTMAA---GHYVAYVRTGKIGGRQQRSTGSKSWFY 1026
Query: 360 IDDCKVMAVDEEEVHAQGAYMLLYSR 385
D +V EEV AY+L Y R
Sbjct: 1027 ASDAQVREASLEEVLNCEAYILFYER 1052
>Os07g0160000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 911
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 76/147 (51%), Gaps = 9/147 (6%)
Query: 239 DADSLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQSGRF 298
D+ +L CL+ F E L ++ + C C + +A K+L +++ P +L I LKRF +F
Sbjct: 735 DSVALHGCLEAFLKEEPLGPEDMWYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRFSYTQF 794
Query: 299 --GKLNKRVTFPMK-LDLTPY-MSSTDGSD-QYDLYAVVVHLDMLNASFFGHYICYIKNY 353
KL V FP+ LDL+ Y + ++ SD Y LYA+ H + GHY I +
Sbjct: 795 TRNKLETFVDFPISDLDLSSYIIDKSELSDCHYRLYAISNHYGNMGG---GHYTASIYHE 851
Query: 354 RGR-WYKIDDCKVMAVDEEEVHAQGAY 379
G+ WYK DD V + E+ + AY
Sbjct: 852 EGKGWYKFDDECVRPITEDSIKTPAAY 878
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 34,633,179
Number of extensions: 1614772
Number of successful extensions: 3575
Number of sequences better than 1.0e-10: 19
Number of HSP's gapped: 3522
Number of HSP's successfully gapped: 19
Length of query: 944
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 834
Effective length of database: 11,292,261
Effective search space: 9417745674
Effective search space used: 9417745674
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)