Os06g0654000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein.
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Os06g0654000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.44 | 0.327 | 8.76 | 0.133 | 1.29 | 1.08 | 0.476 | -1.44 | -0.0826 | 6.37 | 29.1 | 83 | -- | -- |
| 51.11 | 0.333 | 8.79 | -0.0904 | 1.28 | 1.14 | 0.281 | -- | -0.118 | 6.4 | 28.16 | 95 | -- | -- |
| 48.95 | 0.326 | 8.76 | 0.119 | 1.3 | 1.08 | -- | -1.34 | -0.0891 | 6.35 | 29.2 | 77 | -- | -- |
| 51.28 | 0.334 | 8.79 | -0.0972 | 1.29 | 1.1 | -- | -- | -0.137 | 6.33 | 28.07 | 86 | -- | -- |
| 114.21 | 0.498 | 8.76 | 0.322 | -- | 2.08 | -- | -1.14 | 0.0399 | -- | 31.93 | 272 | -- | -- |
| 68 | 0.387 | 8.84 | -0.381 | 1.52 | -- | 0.178 | -- | -0.374 | 5.67 | -- | -- | -- | -- |
| 68.08 | 0.386 | 8.84 | -0.38 | 1.52 | -- | -- | -- | -0.375 | 5.66 | -- | -- | -- | -- |
| 115.38 | 0.5 | 8.79 | 0.135 | -- | 2.04 | -- | -- | 0.0142 | -- | 31.01 | 273 | -- | -- |
| 51.53 | 0.334 | 8.79 | -- | 1.27 | 1.15 | -- | -- | -0.124 | 6.38 | 28.19 | 88 | -- | -- |
| 187.65 | 0.64 | 8.87 | -0.331 | -- | -- | -- | -- | -0.339 | -- | -- | -- | -- | -- |
| 71.88 | 0.397 | 8.83 | -- | 1.51 | -- | -- | -- | -0.333 | 5.67 | -- | -- | -- | -- |
| 115.84 | 0.501 | 8.79 | -- | -- | 2 | -- | -- | -0.00958 | -- | 31.11 | 272 | -- | -- |
| 190.54 | 0.644 | 8.86 | -- | -- | -- | -- | -- | -0.302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.58 | temperature | 10 | 90 | > th | dose dependent | rect. | 6 | 22 |
| 2 | 37.26 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 5 | 37.61 | temperature | 10 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 8 | 38.21 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 60 | 42.68 | temperature | 10 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 103 | 44.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 133 | 45.46 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 137 | 45.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 144 | 45.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 147 | 45.69 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 151 | 45.84 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 168 | 46.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 17 |
| 174 | 46.36 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 187 | 46.53 | radiation | 1 | 270 | > th | dose independent | sin | 2 | NA |
| 188 | 46.54 | temperature | 25 | 90 | < th | dose independent | rect. | 4 | 17 |
| 212 | 46.88 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 21 |
| 221 | 46.99 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 18 |
| 228 | 47.05 | temperature | 20 | 10 | > th | dose independent | rect. | 8 | 20 |
| 235 | 47.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 237 | 47.14 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 20 |
| 244 | 47.19 | radiation | 1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 274 | 47.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 307 | 47.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 320 | 47.85 | radiation | 1 | 270 | > th | dose independent | rect. | 17 | 22 |
| 344 | 47.99 | temperature | 10 | 90 | > th | dose dependent | sin | 6 | NA |
| 352 | 48.05 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 363 | 48.18 | temperature | 30 | 90 | < th | dose dependent | sin | 7 | NA |
| 367 | 48.22 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 386 | 48.33 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 389 | 48.33 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 424 | 48.59 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 443 | 48.68 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 456 | 48.76 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 457 | 48.77 | radiation | 1 | 270 | < th | dose dependent | sin | 1 | NA |
| 504 | 49.00 | temperature | 20 | 270 | > th | dose independent | rect. | 20 | 17 |
| 587 | 49.43 | radiation | 1 | 270 | < th | dose independent | sin | 2 | NA |
| 590 | 49.46 | radiation | 1 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 596 | 49.49 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 614 | 49.55 | humidity | 60 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 620 | 49.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 656 | 49.70 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 667 | 49.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 688 | 49.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 697 | 49.86 | temperature | 30 | 270 | < th | dose dependent | sin | 9 | NA |
| 699 | 49.87 | radiation | 1 | 270 | > th | dose independent | rect. | 6 | 9 |
| 703 | 49.89 | radiation | 1 | 270 | < th | dose independent | rect. | 1 | 20 |
| 760 | 50.13 | temperature | 20 | 270 | > th | dose independent | rect. | 19 | 7 |
| 793 | 50.25 | temperature | 20 | 10 | > th | dose independent | rect. | 23 | 15 |
| 798 | 50.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 841 | 50.40 | radiation | 40 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 870 | 50.49 | radiation | 20 | 14400 | < th | dose independent | rect. | 22 | 8 |
| 876 | 50.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 891 | 50.55 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 946 | 50.72 | temperature | 15 | 270 | > th | dose independent | rect. | 6 | 8 |
| 954 | 50.75 | humidity | 90 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 989 | 50.87 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 996 | 50.89 | radiation | 20 | 14400 | < th | dose independent | rect. | 24 | 6 |