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Os03g0190800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15) (Ubiquitin- specific processing protease 3) (AtUBP3).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0128) R2 : 0.663
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.915 (0.0307) R2dC : 0.658 R2C : 0.658
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0669 (0.027) R2dN8 : 0.00585 R2N8 : 0.00554
σ : 0.242
deviance : 26.77
__
_____
C
peak time of C : 0.866
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.03 0.194 10.8 -0.414 0.615 0.361 0.223 -0.297 0.0129 1.23 17.81 10 -- --
17.13 0.193 10.8 -0.4 0.603 0.358 -0.0116 -- 0.0088 1.18 16.12 7 -- --
17.06 0.192 10.8 -0.406 0.605 0.369 -- -0.162 0.00529 1.19 16.87 9 -- --
17.12 0.193 10.8 -0.405 0.596 0.365 -- -- 0.00786 1.22 16.11 7 -- --
26.45 0.24 10.8 -0.357 -- 0.73 -- -0.107 0.0632 -- 14.41 20 -- --
21.93 0.22 10.8 -0.427 0.922 -- 0.0284 -- 0.0193 0.888 -- -- -- --
21.93 0.219 10.8 -0.428 0.922 -- -- -- 0.0192 0.887 -- -- -- --
26.55 0.24 10.8 -0.356 -- 0.731 -- -- 0.0627 -- 14.42 20 -- --
21.46 0.216 10.8 -- 0.596 0.368 -- -- 0.04 1.12 16.1 8 -- --
74.92 0.404 10.8 -0.394 -- -- -- -- 0.0365 -- -- -- -- --
26.77 0.242 10.8 -- 0.915 -- -- -- 0.0669 0.866 -- -- -- --
26.35 0.239 10.8 -- -- 0.816 -- -- 0.0718 -- 10.23 166 -- --
79.02 0.415 10.8 -- -- -- -- -- 0.0802 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.37 radiation 40.0 270 < th dose independent rect. 12 19
5 14.73 radiation 40.0 270 < th dose dependent rect. 2 15
6 14.74 radiation 10.0 270 < th dose dependent rect. 3 14
14 14.99 wind 9.0 270 < th dose independent rect. 7 6
15 14.99 temperature 10.0 270 > th dose independent rect. 7 6
16 14.99 atmosphere 995.0 270 > th dose independent rect. 7 6
17 14.99 atmosphere 1015.0 270 < th dose independent rect. 7 6
18 14.99 precipitation 0.1 270 < th dose independent rect. 7 6
19 14.99 temperature 10.0 270 > th dose independent rect. 13 18
20 14.99 precipitation 0.1 270 < th dose dependent rect. 7 6
24 15.01 precipitation 0.1 270 < th dose independent rect. 13 18
26 15.01 precipitation 0.1 270 < th dose dependent rect. 13 18
27 15.03 humidity 50.0 270 > th dose independent rect. 7 6
30 15.05 atmosphere 995.0 270 > th dose independent rect. 13 18
31 15.06 radiation 1.0 270 > th dose independent rect. 7 6
32 15.09 wind 9.0 270 < th dose independent rect. 13 18
33 15.09 radiation 40.0 90 < th dose dependent rect. 13 20
34 15.10 radiation 20.0 270 < th dose dependent rect. 2 6
38 15.15 wind 9.0 270 < th dose independent rect. 7 19
43 15.15 radiation 40.0 270 < th dose dependent rect. 13 18
46 15.17 wind 1.0 270 > th dose independent rect. 2 5
63 15.20 wind 9.0 270 < th dose independent rect. 2 5
64 15.20 temperature 10.0 270 > th dose independent rect. 2 5
66 15.20 temperature 30.0 270 < th dose independent rect. 2 5
67 15.20 humidity 50.0 270 > th dose independent rect. 2 5
69 15.20 atmosphere 995.0 270 > th dose independent rect. 2 5
70 15.20 atmosphere 1015.0 270 < th dose independent rect. 2 5
71 15.20 radiation 40.0 270 < th dose independent rect. 2 5
72 15.20 temperature 10.0 270 > th dose independent rect. 7 19
75 15.21 precipitation 0.1 270 < th dose independent rect. 2 5
78 15.21 precipitation 0.1 270 < th dose dependent rect. 2 5
91 15.25 radiation 1.0 270 < th dose independent rect. 3 15
119 15.41 precipitation 0.1 270 < th dose independent rect. 7 19
122 15.41 precipitation 0.1 270 < th dose dependent rect. 7 19
139 15.53 wind 1.0 270 > th dose independent rect. 7 19
144 15.55 radiation 1.0 270 < th dose independent rect. 18 9
149 15.56 radiation 10.0 270 < th dose dependent rect. 18 9
150 15.57 humidity 50.0 270 > th dose independent rect. 13 18
176 15.61 radiation 40.0 270 < th dose independent rect. 2 15
181 15.62 wind 9.0 270 < th dose independent rect. 18 9
184 15.62 atmosphere 995.0 270 > th dose dependent rect. 2 5
187 15.62 radiation 40.0 10 < th dose dependent rect. 5 15
194 15.63 temperature 10.0 270 > th dose independent rect. 18 9
195 15.63 humidity 50.0 270 > th dose independent rect. 18 9
196 15.63 atmosphere 995.0 270 > th dose independent rect. 18 9
200 15.63 temperature 10.0 270 > th dose independent rect. 3 15
201 15.63 atmosphere 1015.0 270 < th dose independent rect. 3 15
202 15.63 precipitation 0.1 270 < th dose independent rect. 3 15
207 15.63 precipitation 0.1 270 < th dose dependent rect. 3 15
213 15.64 radiation 10.0 270 < th dose dependent sin 3 NA
214 15.64 humidity 50.0 270 > th dose dependent rect. 2 5
219 15.65 wind 1.0 270 > th dose independent rect. 7 6
228 15.67 radiation 20.0 10 < th dose independent rect. 5 17
272 15.71 radiation 40.0 10 < th dose dependent rect. 5 17
275 15.72 precipitation 0.1 270 < th dose independent rect. 18 9
276 15.72 atmosphere 995.0 270 > th dose independent rect. 3 15
280 15.72 precipitation 0.1 270 < th dose dependent rect. 18 9
286 15.74 radiation 20.0 10 < th dose independent rect. 5 15
287 15.74 wind 1.0 270 > th dose independent rect. 13 18
297 15.77 radiation 20.0 90 < th dose independent rect. 4 16
301 15.77 radiation 40.0 10 < th dose dependent rect. 13 21
310 15.79 temperature 10.0 270 > th dose dependent rect. 2 5
319 15.82 temperature 10.0 270 > th dose independent rect. 12 9
320 15.82 temperature 10.0 270 > th dose independent rect. 21 15
321 15.82 atmosphere 995.0 270 > th dose independent rect. 21 15
323 15.82 wind 9.0 270 < th dose dependent rect. 7 6
331 15.84 wind 9.0 270 < th dose independent rect. 21 15
340 15.85 temperature 30.0 270 < th dose independent rect. 18 9
355 15.88 atmosphere 1015.0 270 < th dose independent rect. 13 18
365 15.89 precipitation 0.1 270 < th dose independent rect. 21 15
369 15.89 precipitation 0.1 270 < th dose dependent rect. 21 15
372 15.90 atmosphere 1015.0 270 < th dose independent rect. 12 9
386 15.91 precipitation 0.1 270 < th dose independent rect. 12 9
387 15.91 wind 1.0 270 > th dose independent rect. 3 15
392 15.91 precipitation 0.1 270 < th dose dependent rect. 12 9
406 15.93 wind 9.0 270 < th dose independent rect. 3 15
418 15.94 humidity 50.0 270 > th dose independent rect. 21 15
422 15.95 wind 9.0 270 < th dose dependent rect. 2 5
437 15.97 radiation 40.0 90 < th dose independent rect. 4 16
456 15.98 atmosphere 995.0 270 > th dose independent rect. 7 19
466 16.00 wind 9.0 270 < th dose independent rect. 12 9
514 16.04 wind 1.0 270 > th dose independent rect. 18 9
535 16.06 atmosphere 995.0 270 > th dose independent rect. 12 8
544 16.07 temperature 10.0 270 > th dose dependent rect. 3 3
545 16.07 radiation 1.0 270 > th dose dependent rect. 7 5
590 16.10 humidity 50.0 90 > th dose dependent rect. 4 16
593 16.11 radiation 40.0 90 < th dose independent rect. 12 23
669 16.16 radiation 10.0 10 > th dose independent rect. 9 6
720 16.20 wind 1.0 270 > th dose independent rect. 12 8
737 16.21 temperature 10.0 270 > th dose dependent rect. 7 5
770 16.24 atmosphere 1015.0 270 < th dose independent rect. 7 19
829 16.27 radiation 20.0 10 < th dose dependent sin 23 NA
842 16.28 humidity 50.0 270 > th dose dependent rect. 2 15
870 16.30 humidity 50.0 10 > th dose dependent rect. 5 15
957 16.35 humidity 90.0 90 < th dose dependent rect. 8 7
975 16.37 radiation 1.0 270 > th dose independent sin 2 NA