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Os08g0478500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0191) R2 : 0.00224
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0408 (0.0403) R2dN8 : 0.00289 R2N8 : 0.00224
σ : 0.36
deviance : 59.63
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
36.89 0.285 11.4 0.36 0.245 -0.482 -0.208 0.57 0.06 4.36 9.672 31 -- --
38.43 0.289 11.5 0.326 0.263 -0.498 0.195 -- 0.047 4.06 9.18 31 -- --
36.92 0.283 11.4 0.373 0.25 -0.49 -- 0.52 0.0534 4.4 9.185 31 -- --
38.48 0.289 11.5 0.334 0.252 -0.471 -- -- 0.0499 4.69 9.34 31 -- --
39.73 0.294 11.5 0.319 -- -0.422 -- 0.558 0.0439 -- 9.304 31 -- --
43.26 0.308 11.4 0.313 0.464 -- -0.482 -- 0.075 10.3 -- -- -- --
44.2 0.311 11.4 0.294 0.467 -- -- -- 0.0739 10.3 -- -- -- --
41.29 0.299 11.4 0.331 -- -0.404 -- -- 0.071 -- 9.33 31 -- --
40.3 0.296 11.5 -- 0.254 -0.439 -- -- 0.0142 5.46 10.08 31 -- --
57.46 0.354 11.5 0.287 -- -- -- -- 0.0726 -- -- -- -- --
46.48 0.319 11.4 -- 0.465 -- -- -- 0.0411 10.3 -- -- -- --
43.27 0.306 11.5 -- -- -0.411 -- -- 0.0131 -- 10.07 30 -- --
59.63 0.36 11.5 -- -- -- -- -- 0.0408 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.57 radiation 10 30 < th dose independent sin 0 NA
3 36.76 radiation 10 30 < th dose independent rect. 13 22
7 36.82 radiation 10 30 < th dose independent rect. 17 23
10 36.97 radiation 10 30 < th dose independent rect. 24 23
11 36.98 radiation 10 30 < th dose independent rect. 6 13
12 36.99 radiation 10 30 < th dose independent no NA NA
13 36.99 radiation 10 30 < th dose independent rect. 15 23
15 37.00 radiation 10 30 < th dose independent rect. 2 17
17 37.02 radiation 10 30 < th dose independent rect. 9 23
18 37.04 radiation 10 30 > th dose independent no NA NA
19 37.04 radiation 10 30 > th dose independent rect. 6 12
111 37.20 radiation 10 30 < th dose independent rect. 5 23
113 37.22 radiation 20 90 < th dose dependent rect. 12 22
118 37.27 radiation 10 30 < th dose independent rect. 17 21
121 37.32 radiation 10 30 > th dose independent rect. 14 23
122 37.33 radiation 10 30 < th dose independent rect. 2 21
123 37.34 radiation 10 30 > th dose independent sin 3 NA
125 37.36 radiation 10 30 > th dose independent rect. 16 23
131 37.45 radiation 20 30 < th dose dependent rect. 17 23
140 37.53 radiation 10 30 < th dose independent rect. 24 20
143 37.55 radiation 10 30 < th dose independent rect. 21 23
147 37.60 radiation 20 30 < th dose dependent no NA NA
150 37.61 radiation 20 30 < th dose dependent rect. 15 23
151 37.64 radiation 20 30 < th dose dependent rect. 9 23
154 37.69 radiation 10 30 < th dose independent rect. 17 18
155 37.69 radiation 20 90 < th dose dependent rect. 1 18
165 37.76 radiation 20 30 < th dose dependent sin 1 NA
169 37.80 radiation 20 30 < th dose dependent rect. 17 17
171 37.80 radiation 20 90 < th dose dependent rect. 15 19
192 37.90 radiation 20 30 < th dose dependent rect. 5 23
194 37.92 radiation 20 90 < th dose dependent rect. 24 23
223 38.00 radiation 10 30 > th dose independent rect. 16 21
235 38.06 radiation 20 90 < th dose dependent rect. 21 23
316 38.08 radiation 10 30 < th dose independent rect. 6 17
329 38.15 atmosphere 1010 10 < th dose independent rect. 2 18
333 38.17 radiation 20 90 < th dose dependent rect. 5 14
347 38.23 radiation 10 30 > th dose independent rect. 11 23
358 38.28 radiation 10 30 < th dose independent rect. 2 12
378 38.31 radiation 20 30 < th dose dependent rect. 2 21
403 38.39 radiation 10 30 > th dose independent rect. 9 23
486 38.57 atmosphere 1015 270 < th dose dependent rect. 1 18
502 38.61 radiation 10 30 > th dose independent rect. 6 7
525 38.63 atmosphere 1010 10 < th dose independent rect. 2 21
530 38.65 radiation 10 30 < th dose independent rect. 2 9
535 38.66 atmosphere 1010 10 < th dose independent rect. 24 23
536 38.66 atmosphere 1015 10 < th dose dependent rect. 2 18
542 38.67 temperature 25 4320 > th dose dependent rect. 5 2
554 38.69 temperature 20 30 > th dose dependent rect. 17 15
556 38.69 temperature 20 270 > th dose dependent rect. 14 18
568 38.71 atmosphere 1010 270 < th dose independent rect. 24 19
570 38.71 atmosphere 1010 270 < th dose independent rect. 22 22
585 38.73 temperature 25 4320 < th dose independent rect. 5 1
586 38.73 temperature 25 4320 > th dose independent rect. 5 2
591 38.73 atmosphere 1005 90 > th dose dependent rect. 6 11
613 38.75 humidity 80 14400 > th dose dependent rect. 23 7
633 38.78 atmosphere 995 90 > th dose dependent rect. 19 22
673 38.85 atmosphere 1005 270 > th dose dependent rect. 4 11
681 38.86 temperature 25 270 > th dose independent rect. 14 18
722 38.89 temperature 25 270 < th dose dependent rect. 6 18
747 38.92 atmosphere 1010 10 < th dose independent rect. 17 15
761 38.92 atmosphere 1005 30 > th dose dependent rect. 4 13
762 38.92 atmosphere 1005 90 > th dose dependent rect. 23 18
766 38.93 radiation 30 90 < th dose dependent rect. 1 9
774 38.94 humidity 80 14400 > th dose dependent rect. 23 4
784 38.94 temperature 15 270 > th dose dependent rect. 13 21
789 38.95 humidity 80 14400 > th dose dependent rect. 24 1
806 38.97 humidity 90 14400 < th dose independent rect. 24 7
826 38.99 wind 1 90 > th dose independent rect. 19 22
834 39.00 atmosphere 1010 270 < th dose independent rect. 24 10
842 39.00 atmosphere 1005 270 > th dose dependent rect. 4 18
847 39.00 temperature 10 270 > th dose dependent rect. 22 22
870 39.03 temperature 25 4320 > th dose independent rect. 1 6
871 39.03 temperature 25 270 < th dose independent rect. 8 16
885 39.04 radiation 10 90 < th dose independent rect. 12 7
901 39.05 temperature 20 270 > th dose independent rect. 24 19
938 39.08 atmosphere 1005 270 > th dose dependent sin 0 NA
941 39.08 radiation 20 30 < th dose dependent rect. 2 13
950 39.09 temperature 20 1440 < th dose dependent rect. 2 2
959 39.09 radiation 20 30 < th dose dependent rect. 7 23
990 39.12 wind 1 14400 > th dose independent rect. 2 1
996 39.12 temperature 25 1440 > th dose dependent rect. 20 12