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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0192800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ubiquitin-specific protease 26.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.04 (0.0345) R2 : 0.365
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.953 (0.0807) R2dC : 0.199 R2C : 0.24
β3 : -1.25 (0.141) R2dE : 0.148 R2E : 0.156
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.166 (0.0806) R2dN8 : 0.00992 R2N8 : -0.027
σ : 0.626
deviance : 180.56
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_____
C
peak time of C : 13.1
E
wheather : humidity
threshold : 72.05
memory length : 8314
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
173.28 0.618 5.05 -0.121 0.951 -1.16 -0.66 -2.4 -0.0425 13.1 68 8278 -- --
180.21 0.625 5.07 0.063 0.951 -1.2 -0.629 -- 0.103 13.2 70 8304 -- --
175.06 0.616 5.06 -0.138 0.95 -1.16 -- -2.3 -0.0448 13.1 67.89 8277 -- --
180.49 0.626 5.04 0.0577 0.961 -1.23 -- -- 0.168 13.2 72 8313 -- --
230.01 0.706 5.06 -0.222 -- -1.42 -- -2.41 -0.0294 -- 67.75 8265 -- --
209.87 0.679 5.11 0.233 1.06 -- -0.449 -- -0.159 13.1 -- -- -- --
210.7 0.68 5.11 0.217 1.06 -- -- -- -0.162 13 -- -- -- --
235.63 0.715 5.05 -0.00888 -- -1.49 -- -- 0.197 -- 72 8280 -- --
180.56 0.626 5.04 -- 0.953 -1.25 -- -- 0.166 13.1 72.05 8314 -- --
280.08 0.782 5.13 0.177 -- -- -- -- -0.182 -- -- -- -- --
211.94 0.681 5.12 -- 1.05 -- -- -- -0.186 13 -- -- -- --
235.59 0.715 5.04 -- -- -1.49 -- -- 0.219 -- 72.41 8280 -- --
280.9 0.782 5.13 -- -- -- -- -- -0.202 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 161.42 humidity 90 14400 > th dose dependent rect. 20 5
9 162.32 humidity 90 14400 > th dose independent rect. 21 2
11 162.56 humidity 90 14400 > th dose independent rect. 20 4
14 162.80 humidity 90 14400 < th dose independent rect. 20 3
15 162.80 humidity 90 14400 > th dose independent rect. 18 7
27 163.44 humidity 90 14400 > th dose dependent rect. 22 1
33 163.61 humidity 90 14400 > th dose dependent sin 15 NA
97 165.09 humidity 90 14400 > th dose independent sin 15 NA
105 165.23 humidity 90 14400 > th dose dependent rect. 18 16
109 165.28 humidity 90 14400 > th dose independent rect. 18 16
118 165.38 humidity 90 14400 > th dose dependent rect. 7 21
141 165.60 humidity 90 14400 > th dose dependent rect. 9 19
167 165.77 humidity 90 14400 > th dose dependent rect. 3 22
294 166.50 humidity 90 14400 > th dose dependent no NA NA
300 166.52 humidity 90 14400 > th dose independent rect. 7 21
302 166.52 humidity 90 14400 > th dose dependent rect. 9 23
318 166.61 humidity 90 14400 < th dose independent rect. 17 17
376 167.02 humidity 90 14400 > th dose independent rect. 2 21
394 167.15 humidity 90 14400 > th dose independent rect. 9 16
459 167.43 humidity 90 14400 < th dose independent rect. 7 19
465 167.46 humidity 90 14400 < th dose independent sin 16 NA
491 167.62 humidity 90 14400 > th dose independent no NA NA
496 167.64 humidity 90 14400 > th dose independent rect. 9 23
551 168.01 wind 3 43200 > th dose independent rect. 6 1
575 168.16 wind 3 43200 < th dose independent rect. 6 1
576 168.16 humidity 90 14400 < th dose independent rect. 1 22
708 168.93 wind 1 43200 > th dose dependent rect. 6 1
717 168.99 wind 9 43200 < th dose dependent rect. 6 1
735 169.11 humidity 90 14400 < th dose independent no NA NA
765 169.33 radiation 20 4320 > th dose independent rect. 6 2
833 169.73 humidity 90 14400 > th dose dependent rect. 7 1
837 169.78 humidity 80 14400 > th dose independent rect. 10 1
838 169.78 humidity 90 14400 < th dose independent rect. 7 1
850 169.85 wind 3 43200 < th dose independent rect. 1 6
852 169.89 wind 3 43200 > th dose independent rect. 1 14
853 169.89 wind 3 43200 < th dose independent rect. 1 14
879 170.09 humidity 90 14400 > th dose dependent rect. 6 4
918 170.28 humidity 80 14400 > th dose independent rect. 8 7
953 170.49 wind 3 43200 > th dose independent rect. 1 6
963 170.55 humidity 90 14400 < th dose independent rect. 5 6