BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0192800 Os03g0192800|AK110648
         (311 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0192800  Similar to Ubiquitin-specific protease 26           605   e-173
Os06g0654000  Peptidase C19, ubiquitin carboxyl-terminal hyd...    70   2e-12

>Os03g0192800 Similar to Ubiquitin-specific protease 26
          Length = 311

 Score =  605 bits (1559), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 292/311 (93%), Positives = 292/311 (93%)

Query: 1   MSRPNTRNKSKRPRADDCESPSAVFKKIHSTGAITKGDIKQLYMVWKPVCHGCHGNSKDS 60
           MSRPNTRNKSKRPRADDCESPSAVFKKIHSTGAITKGDIKQLYMVWKPVCHGCHGNSKDS
Sbjct: 1   MSRPNTRNKSKRPRADDCESPSAVFKKIHSTGAITKGDIKQLYMVWKPVCHGCHGNSKDS 60

Query: 61  PNCFCGLIPAANGVRKSGLWQRTNEIIRALGPNPSTDLRDSTETPAGLTNLGATCYANSI 120
           PNCFCGLIPAANGVRKSGLWQRTNEIIRALGPNPSTDLRDSTETPAGLTNLGATCYANSI
Sbjct: 61  PNCFCGLIPAANGVRKSGLWQRTNEIIRALGPNPSTDLRDSTETPAGLTNLGATCYANSI 120

Query: 121 LQCLYMNTSFRLGIFSLEPDILKMHPVLDQLARLFAQLHSSKMAFIDSAPFIKTLELDNG 180
           LQCLYMNTSFRLGIFSLEPDILKMHPVLDQLARLFAQLHSSKMAFIDSAPFIKTLELDNG
Sbjct: 121 LQCLYMNTSFRLGIFSLEPDILKMHPVLDQLARLFAQLHSSKMAFIDSAPFIKTLELDNG 180

Query: 181 VQQDXXXXXXXXXXXXXXXXXXXKVPGARTIVQHLFRGSVSHVTRCSSCGRDSEASSKME 240
           VQQD                   KVPGARTIVQHLFRGSVSHVTRCSSCGRDSEASSKME
Sbjct: 181 VQQDSHEFLTLFLSLLEGSLSHSKVPGARTIVQHLFRGSVSHVTRCSSCGRDSEASSKME 240

Query: 241 DFYELELNIKGLNNLEQSLDDYLSTEALDGENQYFCESCQKRVDATRCIKLRSLPPVVNF 300
           DFYELELNIKGLNNLEQSLDDYLSTEALDGENQYFCESCQKRVDATRCIKLRSLPPVVNF
Sbjct: 241 DFYELELNIKGLNNLEQSLDDYLSTEALDGENQYFCESCQKRVDATRCIKLRSLPPVVNF 300

Query: 301 QLKRYVFLPKV 311
           QLKRYVFLPKV
Sbjct: 301 QLKRYVFLPKV 311



>Os06g0654000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
           protein
          Length = 944

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 23/228 (10%)

Query: 97  DLRDSTETPAGLTNLGATCYANSILQCLYMNTSFRLGIFSLEP--DILKMHPVLDQLARL 154
           + RD    P GL N G +C+AN +LQCL         +  ++   +  K H     L  L
Sbjct: 70  NWRDLDYLPCGLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYKRHEDWCFLCEL 129

Query: 155 FAQLHSSKMAFIDSAPFIKTLELDN-------GVQQDXXXXXXXXXXXXXXXXXXXKVPG 207
              +  +  +    AP      L N       G Q+D                   +  G
Sbjct: 130 QCHIQRASESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQSACLD-EFGG 188

Query: 208 AR---------TIVQHLFRGSVSHVTRCSSCGRDSEASSKMEDFYELELNIKG-LNNLEQ 257
            +         T++QH+F G +    +C++CG     S++ E+  +L + I G  ++LE+
Sbjct: 189 EKAVDPSTQETTLIQHIFGGRLQSQVQCTACGM---VSNRYENMMDLTVEIHGDADSLEE 245

Query: 258 SLDDYLSTEALDGENQYFCESCQKRVDATRCIKLRSLPPVVNFQLKRY 305
            LD + + E LDG+N+Y C+ C   V A + + +   P ++   LKR+
Sbjct: 246 CLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRF 293



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,212,361
Number of extensions: 397235
Number of successful extensions: 1003
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1008
Number of HSP's successfully gapped: 3
Length of query: 311
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 210
Effective length of database: 11,762,187
Effective search space: 2470059270
Effective search space used: 2470059270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)