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Os05g0510300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0122) R2 : 0.148
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.228 (0.0256) R2dN8 : 0.192 R2N8 : 0.148
σ : 0.229
deviance : 24.08
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.33 0.184 11.8 -0.256 0.513 0.386 -1.08 -1.05 0.23 10.8 0.48 104 -- --
16.64 0.19 11.8 -0.278 0.529 0.383 0.103 -- 0.231 10.8 0.5799 103 -- --
16.18 0.187 11.8 -0.289 0.531 0.397 -- -0.231 0.223 11.1 0.4509 111 -- --
16.47 0.189 11.8 -0.311 0.523 0.399 -- -- 0.224 11.1 0.4504 111 -- --
18.71 0.201 11.8 -0.267 -- 0.246 -- -0.289 0.243 -- 10.02 783 -- --
18.37 0.201 11.8 -0.337 0.211 -- -0.416 -- 0.185 6.42 -- -- -- --
18.75 0.203 11.8 -0.342 0.211 -- -- -- 0.187 6.91 -- -- -- --
17.85 0.197 11.8 -0.297 -- 0.333 -- -- 0.207 -- 0.333 892 -- --
19.1 0.204 11.8 -- 0.534 0.41 -- -- 0.259 11.2 0.44 111 -- --
21.08 0.215 11.8 -0.337 -- -- -- -- 0.191 -- -- -- -- --
21.83 0.219 11.8 -- 0.207 -- -- -- 0.225 7.01 -- -- -- --
20.25 0.21 11.8 -- -- 0.335 -- -- 0.208 -- 1.216e-07 928 -- --
24.08 0.229 11.8 -- -- -- -- -- 0.228 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.08 humidity 50.0 720 > th dose dependent rect. 18 1
2 15.19 radiation 1.0 90 < th dose independent rect. 18 23
3 15.20 humidity 60.0 30 > th dose dependent rect. 18 12
4 15.24 radiation 1.0 90 < th dose dependent rect. 18 23
10 15.39 radiation 1.0 90 > th dose independent rect. 16 23
12 15.40 radiation 1.0 720 < th dose independent rect. 18 1
18 15.45 radiation 1.0 90 < th dose dependent rect. 15 23
19 15.49 radiation 1.0 90 < th dose dependent no NA NA
22 15.49 radiation 1.0 90 < th dose dependent rect. 12 22
23 15.49 radiation 1.0 90 < th dose dependent rect. 9 23
30 15.51 radiation 1.0 90 < th dose dependent rect. 12 20
47 15.56 radiation 1.0 90 < th dose independent rect. 15 23
52 15.59 radiation 1.0 90 < th dose independent no NA NA
53 15.59 radiation 1.0 90 > th dose independent rect. 5 14
62 15.59 radiation 1.0 90 < th dose independent rect. 12 22
64 15.59 radiation 1.0 90 < th dose independent rect. 8 23
69 15.60 radiation 1.0 90 > th dose independent no NA NA
118 15.61 radiation 1.0 90 < th dose independent rect. 11 20
129 15.62 radiation 1.0 720 < th dose dependent rect. 18 1
143 15.66 humidity 70.0 30 > th dose independent rect. 18 12
147 15.68 radiation 1.0 90 < th dose dependent rect. 15 19
151 15.69 radiation 1.0 90 < th dose independent rect. 18 16
155 15.69 radiation 1.0 90 < th dose dependent rect. 15 17
156 15.69 radiation 1.0 90 < th dose dependent rect. 17 17
161 15.71 radiation 1.0 90 < th dose independent rect. 18 14
167 15.71 radiation 1.0 90 < th dose dependent rect. 17 15
204 15.78 radiation 1.0 90 < th dose independent sin 10 NA
206 15.79 radiation 1.0 90 < th dose independent rect. 15 19
212 15.81 radiation 1.0 90 < th dose independent rect. 15 16
228 15.83 radiation 10.0 720 < th dose dependent rect. 14 15
240 15.86 radiation 1.0 720 > th dose independent rect. 15 16
251 15.89 radiation 1.0 90 < th dose dependent rect. 3 23
254 15.91 humidity 60.0 720 > th dose independent rect. 18 1
260 15.93 radiation 1.0 90 < th dose dependent sin 10 NA
262 15.93 radiation 10.0 720 < th dose dependent rect. 15 4
274 15.97 atmosphere 1000.0 30 > th dose independent rect. 6 12
277 15.98 humidity 90.0 90 < th dose independent rect. 16 15
278 15.98 humidity 50.0 720 > th dose independent rect. 7 23
279 15.99 radiation 1.0 90 > th dose independent sin 10 NA
286 16.00 humidity 70.0 10 > th dose dependent rect. 12 18
293 16.02 radiation 1.0 720 < th dose independent rect. 14 15
300 16.03 radiation 1.0 90 < th dose independent rect. 3 23
308 16.05 temperature 30.0 30 < th dose independent rect. 18 12
313 16.05 humidity 90.0 720 < th dose dependent rect. 15 2
327 16.08 temperature 30.0 30 < th dose independent rect. 6 12
330 16.09 atmosphere 1000.0 720 > th dose independent rect. 6 1
332 16.10 temperature 10.0 1440 > th dose independent rect. 7 12
335 16.10 temperature 10.0 1440 > th dose independent rect. 19 12
338 16.10 temperature 30.0 1440 < th dose independent rect. 19 12
342 16.10 humidity 50.0 1440 > th dose independent rect. 19 12
344 16.10 atmosphere 995.0 1440 > th dose independent rect. 19 12
345 16.10 radiation 40.0 1440 < th dose independent rect. 19 12
349 16.10 radiation 1.0 720 < th dose independent rect. 10 19
369 16.13 temperature 25.0 270 > th dose dependent rect. 9 1
373 16.14 humidity 70.0 10 > th dose dependent rect. 16 14
390 16.18 radiation 1.0 90 > th dose independent rect. 17 14
396 16.19 radiation 10.0 10 < th dose independent rect. 6 21
413 16.21 radiation 1.0 720 < th dose independent rect. 3 16
421 16.21 radiation 1.0 90 < th dose dependent rect. 1 23
422 16.22 wind 1.0 720 > th dose independent rect. 6 1
423 16.22 temperature 30.0 720 < th dose independent rect. 18 1
433 16.22 radiation 1.0 720 < th dose dependent rect. 3 16
435 16.23 radiation 10.0 720 < th dose dependent sin 15 NA
458 16.25 humidity 50.0 720 > th dose dependent rect. 11 19
461 16.26 temperature 25.0 270 > th dose dependent rect. 6 5
464 16.27 radiation 1.0 720 < th dose independent sin 14 NA
480 16.27 radiation 1.0 720 < th dose dependent rect. 9 20
485 16.28 temperature 25.0 90 > th dose dependent rect. 8 7
493 16.29 humidity 50.0 720 > th dose dependent rect. 14 15
514 16.31 radiation 1.0 720 > th dose independent sin 13 NA
532 16.32 radiation 1.0 90 < th dose independent rect. 1 23
555 16.33 humidity 50.0 720 > th dose dependent rect. 7 23
581 16.35 humidity 50.0 720 > th dose independent rect. 2 17
636 16.38 wind 7.0 720 < th dose independent rect. 6 1
638 16.38 temperature 10.0 720 > th dose independent rect. 6 1
639 16.38 temperature 30.0 720 < th dose independent rect. 6 1
640 16.38 humidity 50.0 720 > th dose independent rect. 6 1
643 16.38 atmosphere 1015.0 720 < th dose independent rect. 6 1
644 16.38 radiation 40.0 720 < th dose independent rect. 6 1
648 16.38 temperature 10.0 720 > th dose independent rect. 7 23
667 16.39 precipitation 0.1 720 < th dose independent rect. 6 1
673 16.39 precipitation 0.1 720 < th dose independent rect. 19 23
674 16.39 precipitation 0.1 720 < th dose dependent rect. 6 1
684 16.39 precipitation 0.1 720 < th dose dependent rect. 19 23
686 16.40 wind 9.0 720 < th dose independent rect. 18 1
687 16.40 temperature 10.0 720 > th dose independent rect. 18 1
689 16.40 atmosphere 1015.0 720 < th dose independent rect. 18 1
698 16.40 temperature 10.0 720 > th dose independent rect. 19 23
707 16.40 radiation 40.0 720 < th dose dependent rect. 15 15
710 16.41 temperature 25.0 270 > th dose independent rect. 6 1
725 16.41 humidity 50.0 720 > th dose dependent rect. 1 19
743 16.42 radiation 20.0 30 < th dose dependent rect. 18 12
746 16.42 humidity 80.0 720 < th dose dependent rect. 14 18
750 16.43 wind 9.0 90 < th dose independent rect. 7 23
752 16.43 humidity 90.0 720 > th dose dependent rect. 20 1
766 16.44 atmosphere 995.0 720 > th dose independent rect. 18 1
772 16.44 radiation 1.0 90 > th dose independent rect. 9 23
781 16.44 humidity 80.0 720 < th dose dependent rect. 12 20
783 16.45 precipitation 0.1 720 < th dose independent rect. 18 1
784 16.45 temperature 30.0 30 < th dose independent rect. 6 8
789 16.45 precipitation 0.1 720 < th dose dependent rect. 18 1
790 16.45 temperature 20.0 270 > th dose dependent rect. 5 2
794 16.45 atmosphere 995.0 30 > th dose dependent rect. 6 12
806 16.46 wind 1.0 720 > th dose independent rect. 18 1
833 16.47 humidity 70.0 720 < th dose independent rect. 15 3
842 16.47 humidity 80.0 720 < th dose dependent rect. 14 11
868 16.48 atmosphere 1000.0 30 > th dose independent rect. 7 23
879 16.48 radiation 10.0 720 < th dose dependent rect. 11 8
883 16.48 humidity 80.0 720 < th dose dependent rect. 12 13
897 16.49 humidity 60.0 14400 > th dose independent rect. 7 1
900 16.49 humidity 90.0 90 < th dose independent rect. 23 9
905 16.49 radiation 1.0 720 < th dose independent rect. 24 23
928 16.49 radiation 1.0 720 < th dose dependent rect. 24 23
929 16.50 temperature 30.0 90 < th dose independent sin 6 NA
936 16.50 radiation 1.0 720 > th dose independent rect. 12 23
982 16.51 temperature 10.0 30 > th dose independent rect. 6 12
984 16.51 temperature 10.0 30 > th dose independent rect. 18 12
986 16.51 atmosphere 995.0 30 > th dose independent rect. 18 12
987 16.51 atmosphere 1015.0 30 < th dose independent rect. 6 12
988 16.51 radiation 20.0 30 < th dose independent rect. 18 12
998 16.51 radiation 1.0 720 < th dose independent rect. 22 23