BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0510300 Os05g0510300|AK120186
(644 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0510300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 1162 0.0
Os08g0478500 Peptidase C19, ubiquitin carboxyl-terminal hyd... 223 4e-58
Os09g0464400 Peptidase C19, ubiquitin carboxyl-terminal hyd... 221 1e-57
Os02g0795000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 207 2e-53
Os06g0184300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 207 2e-53
Os02g0244300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 197 2e-50
Os06g0654000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 187 2e-47
Os02g0573400 Peptidase C19, ubiquitin carboxyl-terminal hyd... 132 8e-31
Os04g0647300 Similar to Ubiquitin-specific protease 22 132 1e-30
Os04g0452400 Similar to Ubiquitin carboxyl-terminal hydrola... 123 5e-28
Os03g0190800 Similar to Ubiquitin carboxyl-terminal hydrola... 122 9e-28
Os07g0661300 Similar to Ubiquitin-specific protease 24 109 6e-24
Os12g0489100 Similar to Ubiquitin-specific protease 12 87 4e-17
Os03g0192800 Similar to Ubiquitin-specific protease 26 76 7e-14
Os11g0619500 76 8e-14
Os11g0573000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 74 5e-13
Os08g0528000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 70 4e-12
Os10g0160000 Similar to Ubiquitin carboxyl-terminal hydrola... 69 8e-12
Os12g0621000 Similar to Ubiquitin-specific protease 8 (Frag... 68 2e-11
>Os05g0510300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 644
Score = 1162 bits (3006), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 570/644 (88%), Positives = 570/644 (88%)
Query: 1 MAPAVQXXXXXXXXXXXXXXXXXXLKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLC 60
MAPAVQ LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLC
Sbjct: 1 MAPAVQPPPSPPPPRRPRSGPPPGLKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLC 60
Query: 61 KKVLPNKDKECVFCVVERQISRLLRTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFL 120
KKVLPNKDKECVFCVVERQISRLLRTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFL
Sbjct: 61 KKVLPNKDKECVFCVVERQISRLLRTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFL 120
Query: 121 RYIIDACHTAGLRIRKRLPASNANGDAGEEEVRVQGPYMVMKETFGGALLSQVKCLTCKG 180
RYIIDACHTAGLRIRKRLPASNANGDAGEEEVRVQGPYMVMKETFGGALLSQVKCLTCKG
Sbjct: 121 RYIIDACHTAGLRIRKRLPASNANGDAGEEEVRVQGPYMVMKETFGGALLSQVKCLTCKG 180
Query: 181 ESNKTDEIMDISLDLPGSNSVADALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRA 240
ESNKTDEIMDISLDLPGSNSVADALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRA
Sbjct: 181 ESNKTDEIMDISLDLPGSNSVADALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRA 240
Query: 241 PKVLVIQLKRFEGINGGKINRNIEFKETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPD 300
PKVLVIQLKRFEGINGGKINRNIEFKETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPD
Sbjct: 241 PKVLVIQLKRFEGINGGKINRNIEFKETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPD 300
Query: 301 SGHYYAYVKDAIGRWYCCNDSHISPSSSQDVLSEKVYILFYILSTKTQKPXXXXXXXXXX 360
SGHYYAYVKDAIGRWYCCNDSHISPSSSQDVLSEKVYILFYILSTKTQKP
Sbjct: 301 SGHYYAYVKDAIGRWYCCNDSHISPSSSQDVLSEKVYILFYILSTKTQKPSTNGYSSSAA 360
Query: 361 XXXXXXXXXXXXXXXXEPLKIPLVKQNGLCSSKGIAPPPLKNGKIAPGMHLKPIHLKNNG 420
EPLKIPLVKQNGLCSSKGIAPPPLKNGKIAPGMHLKPIHLKNNG
Sbjct: 361 KSSNSNGNGISNATSNEPLKIPLVKQNGLCSSKGIAPPPLKNGKIAPGMHLKPIHLKNNG 420
Query: 421 TGKVSSNGKASIIPGNKLEVSEGLTLPAVNGRDSGKYAEPGKMNANGSVSCNKTDVNSQR 480
TGKVSSNGKASIIPGNKLEVSEGLTLPAVNGRDSGKYAEPGKMNANGSVSCNKTDVNSQR
Sbjct: 421 TGKVSSNGKASIIPGNKLEVSEGLTLPAVNGRDSGKYAEPGKMNANGSVSCNKTDVNSQR 480
Query: 481 VLPNTNGNGNPIHFSDLQETIDAKATCAEQYSEKSSIASLEDSKNPVSCHEMSAVIXXXX 540
VLPNTNGNGNPIHFSDLQETIDAKATCAEQYSEKSSIASLEDSKNPVSCHEMSAVI
Sbjct: 481 VLPNTNGNGNPIHFSDLQETIDAKATCAEQYSEKSSIASLEDSKNPVSCHEMSAVIVKDV 540
Query: 541 XXXXXXXXXXXXXXEEGKFKEMXXXXXXXXXXXXGWVDDVRNFMHTIKRRRLQNTGTPQD 600
EEGKFKEM GWVDDVRNFMHTIKRRRLQNTGTPQD
Sbjct: 541 VSSGKDSSSLKHHLEEGKFKEMLAESASSELHLSGWVDDVRNFMHTIKRRRLQNTGTPQD 600
Query: 601 SDTMRKELISESGRIFRSKIPESLREHLIQALRSYYQDKFSLGG 644
SDTMRKELISESGRIFRSKIPESLREHLIQALRSYYQDKFSLGG
Sbjct: 601 SDTMRKELISESGRIFRSKIPESLREHLIQALRSYYQDKFSLGG 644
>Os08g0478500 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 978
Score = 223 bits (568), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 128/326 (39%), Positives = 179/326 (54%), Gaps = 33/326 (10%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLCKKVLPNKDKECVFCVVERQISRLL 84
L NLGN+CY N+VLQCL T PL ++ L HS C +K + C C E+ +
Sbjct: 452 LHNLGNSCYANAVLQCLMFTRPLTSYLLGGLHSKNC-----SKKEWCFMCEFEKLVGEG- 505
Query: 85 RTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDACHTAGLRIRKRLPASNAN 144
R AL SP I+ LP F G+QEDAHEFLRY IDA + ++
Sbjct: 506 RQGKIAL-SPTGILSHLPDIGSSFGPGKQEDAHEFLRYAIDAMQSVCMK----------- 553
Query: 145 GDAGEEEVRVQGPYMVMKET------FGGALLSQVKCLTCKGESNKTDEIMDISLDLPGS 198
E R G + + +ET FGG L S+++C C S + + I+D+++++ G
Sbjct: 554 ------EARKSGTHRLHEETTLMQLIFGGYLRSKIRCTRCDATSEQHERILDLTVEIDGD 607
Query: 199 -NSVADALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEGINGG 257
+S+ AL RF E+L+G NKY C RCK A+K+L + AP VL I LKR++ G
Sbjct: 608 ISSLEGALERFTSTEVLDGDNKYKCSRCKSHERAKKKLTISEAPNVLTIALKRYQSGKFG 667
Query: 258 KINRNIEFKETLFLSDFMYNKNQDSLPVYNLFGSIVHSGF--SPDSGHYYAYVKDAIGRW 315
KIN+ I F ETL L +M K D+ PVY+L+ +VH + SGHY YVKD G+W
Sbjct: 668 KINKAIRFPETLNLQRYMSPKADDTSPVYSLYAVVVHHDIMNAAFSGHYVCYVKDTHGKW 727
Query: 316 YCCNDSHISPSSSQDVLSEKVYILFY 341
Y +DS + P S ++V+S+ Y+L Y
Sbjct: 728 YKTDDSQVKPVSLENVMSKCAYMLLY 753
>Os09g0464400 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 918
Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 184/330 (55%), Gaps = 29/330 (8%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLCKKVLP--------NKDKECVFCVV 76
L NLGN+CY N+VLQCLA T PL + HS C +L +K + C C
Sbjct: 384 LVNLGNSCYANAVLQCLAFTRPLTAYLTEGLHSRNCNLILSQNCVTYHGSKKEWCFMCEF 443
Query: 77 ERQISRLLRTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDACHTAGLRIRK 136
E+ I R ++ SP I+ L F GR+EDAHEFLRY ID +A ++ K
Sbjct: 444 EKLILEGRRGKSHL--SPTGILSHLRDIGSSFGPGREEDAHEFLRYAIDTMQSASMKEAK 501
Query: 137 RLPASNANGDAG--EEEVRVQGPYMVMKETFGGALLSQVKCLTCKGESNKTDEIMDISLD 194
+ NG G EE VQ FGG L S++KC C+G S + + I+D++++
Sbjct: 502 K------NGVYGLPEETTLVQ-------LIFGGYLRSKIKCTMCQGSSEQCERILDLTVE 548
Query: 195 LPGS-NSVADALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEG 253
+ G N++ +AL RF EIL+G N+Y+C RCK A+K+L + AP +L I LKR++
Sbjct: 549 IDGDINTLEEALHRFTSTEILDGDNRYNCSRCKSYERAKKKLTISEAPNILTIALKRYQS 608
Query: 254 INGGKINRNIEFKETLFLSDFMYNKNQDSLPVYNLFGSIVHSGF--SPDSGHYYAYVKDA 311
N GKIN+ + F E L LS++M + D PVY L+ +VH + SGHY YVKD
Sbjct: 609 GNFGKINKAVRFTEYLNLSNYMSTAD-DISPVYQLYAVVVHHDVMNAAFSGHYVCYVKDT 667
Query: 312 IGRWYCCNDSHISPSSSQDVLSEKVYILFY 341
G+W+ +DS + P S + VLS+ Y+LFY
Sbjct: 668 QGKWHKMDDSQVKPVSLEKVLSKCAYMLFY 697
>Os02g0795000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 1185
Score = 207 bits (528), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 176/320 (55%), Gaps = 21/320 (6%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLCKKVLPNKDKECVFCVVERQISRLL 84
L+N GNTCYLNSVLQCL T P + S H + C+ + C C ++R ++ L
Sbjct: 88 LQNFGNTCYLNSVLQCLTYTEPFVAYLQSGEHMSSCRTI-----GFCALCALQRHVNSAL 142
Query: 85 RTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDACHTAGLRIRKRLPASNAN 144
++ G + P I+R L + FR RQEDAHE + ++++ H L P+ +
Sbjct: 143 QS-TGKILRPVHIVRNLRCISRSFRISRQEDAHELMVSLLESMHKCCL------PSGVPS 195
Query: 145 GDAGEEEVRVQGPYMVMKETFGGALLSQVKCLTCKGESNKTDEIMDISLDLPGSNSVADA 204
G E ++ FGG L SQV+C TC SNK D +D+SL++ + ++ A
Sbjct: 196 GSPSAYE------KSLVHRIFGGLLRSQVRCTTCSHCSNKFDPFLDLSLEIANAATLVKA 249
Query: 205 LARFFQPEILEGSNK-YSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEGING-GKINRN 262
L F E+L+G K Y+CE C++ A+K+ + +AP VL I LKRF N KI++
Sbjct: 250 LQHFTAEELLDGGEKQYNCEHCRQKVVAKKRFMIEKAPSVLTIHLKRFSPFNPRHKIDKK 309
Query: 263 IEFKETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPDSGHYYAYVKDAIGRWYCCNDSH 322
++F+ TL L ++ N Y+L+G +VH+G++ SGHYY +V+ + G W+ +D+
Sbjct: 310 VQFQPTLNLKPYVSNPEGMEFK-YSLYGVLVHAGWNTQSGHYYCFVRTSSGIWHNLDDNK 368
Query: 323 ISPSSSQDVLSEKVYILFYI 342
+ DVL +K Y+LFY+
Sbjct: 369 VYQVREADVLRQKAYMLFYV 388
>Os06g0184300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 899
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 177/320 (55%), Gaps = 21/320 (6%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLCKKVLPNKDKECVFCVVERQISRLL 84
L+NLGNTCYLNSVLQCL T P A + S +H + C+ C C ++ + L
Sbjct: 61 LQNLGNTCYLNSVLQCLTYTEPFAAYLQSGKHKSSCRTA-----GFCALCALQNHVKTAL 115
Query: 85 RTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDACHTAGLRIRKRLPASNAN 144
++ G + +P++I++ L + FR RQEDAHE + ++++ H L P+ +
Sbjct: 116 QS-TGKIVTPSQIVKNLRCISRSFRNSRQEDAHELMVNLLESMHKCCL------PSGVPS 168
Query: 145 GDAGEEEVRVQGPYMVMKETFGGALLSQVKCLTCKGESNKTDEIMDISLDLPGSNSVADA 204
E ++ + FGG L SQVKC C SNK D +D+SLD+ + S+ A
Sbjct: 169 ESPSAYE------KSLVHKIFGGRLRSQVKCTQCSHCSNKFDPFLDLSLDIGKATSLVRA 222
Query: 205 LARFFQPEILEGSNK-YSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEGIN-GGKINRN 262
L F E+L+G K Y C+RC+K A+K+ + +AP VL I LKRF N KI++
Sbjct: 223 LQNFTAEELLDGGEKQYQCQRCRKKVVAKKKFTIDKAPYVLTIHLKRFSPFNPREKIDKK 282
Query: 263 IEFKETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPDSGHYYAYVKDAIGRWYCCNDSH 322
++F+ L L F+ + Y+L+G +VH+G++ SGHYY +V+ + G W+ +D+
Sbjct: 283 VDFQPMLDLKPFISDSKGADFK-YSLYGVLVHAGWNTQSGHYYCFVRTSSGMWHNLDDNQ 341
Query: 323 ISPSSSQDVLSEKVYILFYI 342
+ DVL +K Y+LFY+
Sbjct: 342 VRQVREADVLRQKAYMLFYV 361
>Os02g0244300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 975
Score = 197 bits (500), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 174/324 (53%), Gaps = 23/324 (7%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLCKKVLPNKDKECVFCVVERQISRLL 84
L N GN+CY N+VLQCL T PL + L HS C C+ C +E+ S L
Sbjct: 443 LFNCGNSCYANAVLQCLMCTKPLMIYLLLRLHSKDC-----CSKNWCLMCELEQYASTL- 496
Query: 85 RTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDACHTAGLRIRKRLPASNAN 144
E+G SP++I+ L G QEDAHEFLR+++ + A L +
Sbjct: 497 -RESGGPVSPSRILSNLRNIGCRLGGGSQEDAHEFLRHLVMSMQGACL-----------D 544
Query: 145 GDAGEEEVRVQ-GPYMVMKETFGGALLSQVKCLTCKGESNKTDEIMDISLDLPG-SNSVA 202
G GE++V ++++ FGG L S+VKCL C ES + + IMD++L++ G S+
Sbjct: 545 GLGGEKQVEASLQETTLIQQMFGGRLKSKVKCLRCYHESERYENIMDLTLEIHGWVESLQ 604
Query: 203 DALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEGINGGKINRN 262
DAL +F PE L+G N Y C RC ARKQL V P +L + LKRF+ GKIN+
Sbjct: 605 DALTQFTAPEDLDGENMYKCGRCSAYVKARKQLSVHEVPNILTVVLKRFQTGKYGKINKC 664
Query: 263 IEFKETLFLSDFMYNKNQDSLPVYNLFGSIVH--SGFSPDSGHYYAYVKDAIGRWYCCND 320
+ F + L + F+ D+ P+Y L+ +VH + + SGHY +YVKD G W +D
Sbjct: 665 VTFPDMLDMVPFVTGAG-DNPPLYFLYAVVVHVDTENASFSGHYISYVKDMQGTWLRIDD 723
Query: 321 SHISPSSSQDVLSEKVYILFYILS 344
S + S V+SE Y+LFY+ S
Sbjct: 724 SEVQAVSLNQVMSEGAYMLFYMRS 747
>Os06g0654000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 944
Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/329 (34%), Positives = 171/329 (51%), Gaps = 20/329 (6%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLCKKVLPNKDKECVFCVVERQISRLL 84
L N GN+C+ N VLQCL+ T PLA + L HS C K + C C ++ I R
Sbjct: 81 LLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYK---RHEDWCFLCELQCHIQRA- 136
Query: 85 RTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDACHTAGLRIRKRLPASNAN 144
+E+ +P I+ LP + +GRQEDAHEF+R+ ID +A L A
Sbjct: 137 -SESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQSACL---DEFGGEKAV 192
Query: 145 GDAGEEEVRVQGPYMVMKETFGGALLSQVKCLTCKGESNKTDEIMDISLDLPG-SNSVAD 203
+ +E +Q FGG L SQV+C C SN+ + +MD+++++ G ++S+ +
Sbjct: 193 DPSTQETTLIQ-------HIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIHGDADSLEE 245
Query: 204 ALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEGINGGKINRNI 263
L +F E L+G NKY C+ C A+K+L V +AP +L I LKRF+ GK+N+ +
Sbjct: 246 CLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQSGRFGKLNKRV 305
Query: 264 EFKETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPDS--GHYYAYVKDAIGRWYCCNDS 321
F L L+ +M + D Y+L+ +VH S GHY Y+K+ GRWY +D
Sbjct: 306 TFPMKLDLTPYM--SSTDGSDQYDLYAVVVHLDMLNASFFGHYICYIKNYRGRWYKIDDC 363
Query: 322 HISPSSSQDVLSEKVYILFYILSTKTQKP 350
+ ++V ++ Y+L Y T +P
Sbjct: 364 KVMAVDEEEVHAQGAYMLLYSRRTARPRP 392
>Os02g0573400 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 415
Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 166/344 (48%), Gaps = 36/344 (10%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLCKKVLPNKDKECVFCVVE--RQISR 82
L+N GNTCY NSVLQ L P L + + K + + + C+ + QI+
Sbjct: 74 LENFGNTCYCNSVLQALYHCIPFREQLLEYYAT---YKNTEDSEDNLLTCLADLFSQIT- 129
Query: 83 LLRTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDACHTAGLRIRKRLPASN 142
L + G L +P + ++ + E FR +DAHEF ++++ + + +N
Sbjct: 130 LAKKRTGVL-APKRFVQRVRKQNELFRSYMHQDAHEFWNFLVNDIIDI---LEEDCRTAN 185
Query: 143 ANGDAGEEEV------------RVQGPYMVMKETFGGALLSQVKCLTCKGESNKTDEIMD 190
++ + EEV R + ++ TF G L ++ KCL C + K + D
Sbjct: 186 SSPETTPEEVSNGAANALANGARERPLVTLVHRTFQGILTNETKCLMCDTITAKDETFFD 245
Query: 191 ISLDLPGSNSVADALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKR 250
+S+D+ ++S+ L FF EIL G +K+ C++C L A K++ + +AP VLVI LKR
Sbjct: 246 LSIDVEQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKR 305
Query: 251 FEGINGGKINRNIEFKETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPDSGHYYAYVKD 310
F+ + ++ + ++ L + + ++D+ Y+LF +VH G SP+ GHY + +K
Sbjct: 306 FKYVEQLSRHKKLSYRVVYPLELKLGSMSEDADCEYSLFAVVVHVGSSPNHGHYVSQIK- 364
Query: 311 AIGRWYCCNDS--HISPSSSQDVL-----------SEKVYILFY 341
+ G W +D IS S+ ++ YILFY
Sbjct: 365 SHGNWLSFDDDTVQISEESTLQTFYGSSREHCGGNTDHGYILFY 408
>Os04g0647300 Similar to Ubiquitin-specific protease 22
Length = 591
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 162/382 (42%), Gaps = 76/382 (19%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSN-LCKKVLP--------NKDKECVFCV 75
L NLGNTC++NSVLQ L PPL + L RH+ LC + P N C+ C
Sbjct: 213 LNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRYLCPRQTPMRRRSAEANDKAACLACD 272
Query: 76 VERQISRLLRTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDACHTAGLRIR 135
++ S E SPAK + A + Q+DAHEF I+D H
Sbjct: 273 LDEIYSAAFSGERTPY-SPAKFLYSWWQHASNLASYEQQDAHEFFISILDHIH------- 324
Query: 136 KRLPASNANGDAGEEEVRVQGPYMVMKETFGGALLSQVKCLTCKGESNKTDEIMDISLDL 195
N D + + G + F G L S V C C S + MDISLDL
Sbjct: 325 -----ENIKDDQHKSLAQGHGDCCIAHRVFSGILRSDVTCTHCGFTSTTFEPCMDISLDL 379
Query: 196 P------------------------GSNS----VADALARFFQPEILEGSNKYSCERCKK 227
G+N+ + L RF + E L+ K+ CERCK+
Sbjct: 380 DAGYNNSLGVANPKVHVRNGERSSGGTNTKVSTLMRCLERFTRAERLDAEQKFFCERCKE 439
Query: 228 LTSARKQLFVLRAPKVLVIQLKRFEGINGGKINRNI----EFKETLFLSDFMYN------ 277
+ KQ+ + R P V +KRFE + K++R + +F +L ++ ++ +
Sbjct: 440 RQESLKQMSIRRLPLVSCFHIKRFEHSSVKKMSRKVDHCLQFPFSLDMAPYLSSSILRSR 499
Query: 278 ----------KNQDSLPVYN----LFGSIVHSGFSPDSGHYYAYVKDAIGRWYCCNDSHI 323
+ DS+ ++ +F I+HSG ++GHY Y++ WY C+D+ +
Sbjct: 500 FGNRIFPSEASDADSVSEFSSEFEIFAVIMHSG-KLEAGHYVTYLR-LNNHWYKCDDAWV 557
Query: 324 SPSSSQDVLSEKVYILFYILST 345
+ V + + Y+LFY+ T
Sbjct: 558 TRVEEHTVRTSQAYMLFYVQKT 579
>Os04g0452400 Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)
(Ubiquitin- specific processing protease 4) (AtUBP4)
Length = 367
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 27/339 (7%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLCKKVLPNKDKECVFCVVERQISRLL 84
L+N GNTCY NSVLQ L P L + +N K + ++ + C+ + +
Sbjct: 27 LENFGNTCYCNSVLQALYFCIPFREKLLEYYANN---KTPGDAEENLLTCLADLFMQVSQ 83
Query: 85 RTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDAC--------HTAGLRIRK 136
+ + +P + ++ + E FR +DAHEFL ++++ + A +
Sbjct: 84 SKKKTGVIAPKRFVQRVKKQNELFRSYMHQDAHEFLNFLLNELVDILEKESNAAKDSPQS 143
Query: 137 RLPASNANGDAG--EEEVRVQGPYMVMKETFGGALLSQVKCLTCKGESNKTDEIMDISLD 194
P NG VR + P ++ + F G L ++ +CL C+ + + + D+S+D
Sbjct: 144 SSPEKVPNGPVQPLANGVRKEPPVTLVHKNFQGILTNETRCLRCETVTARDETFFDLSVD 203
Query: 195 LPGSNSVADALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEGI 254
+ ++S+ L F E L +K+ C++C L A+K++ + +AP +LVI LKRF+ I
Sbjct: 204 IEQNSSITSCLKNFCSTETLNAEDKFFCDKCCSLQEAQKRMKIKKAPHILVIHLKRFKYI 263
Query: 255 NGGKINRNIEFKETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPDSGHYYAYVKDAIGR 314
+ + ++ +F + + + D Y+LF +VH G P+ GHY + VK +
Sbjct: 264 EQLGRYKKLSYR-VVFPMELKLSTSDDVDTEYSLFAVVVHVGSGPNHGHYVSLVK-SHNH 321
Query: 315 WYCCNDSH---ISPSSSQDVL---------SEKVYILFY 341
W +D + + S+ Q ++ YILFY
Sbjct: 322 WLFFDDENVEMVEESTLQTFFGSSHEYSGNTDHGYILFY 360
>Os03g0190800 Similar to Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15)
(Ubiquitin- specific processing protease 3) (AtUBP3)
Length = 366
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 94/346 (27%), Positives = 158/346 (45%), Gaps = 40/346 (11%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLCKKVLPNKDKECVFCVVE--RQISR 82
L+N GNTCY NSVLQ L P L + +N K + + + C+ + QIS
Sbjct: 25 LENFGNTCYCNSVLQALYFCVPFREQLLEYYANN---KSTGDVEDNMLTCLADLFSQISN 81
Query: 83 LLRTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDA---------------C 127
+ + + +P + I+ L E FR +DAHEFL ++++ C
Sbjct: 82 --QKKKTGVIAPKRFIQRLKKQNEIFRSYMHQDAHEFLNFLLNELVDILEKESKVVAEPC 139
Query: 128 HTAGLRIRKRLPASNANGDAGEEEVRVQGPYMVMKETFGGALLSQVKCLTCKGESNKTDE 187
+ L+ P + +E V P +V K F G L ++ +CL C+ +++ +
Sbjct: 140 ENSSLKKNSNGPINVQLNGTKKEPV----PTLVHK-CFQGILTNETRCLRCETVTDRDET 194
Query: 188 IMDISLDLPGSNSVADALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQ 247
D+SLD+ ++S+ L F E L +K+ C++C L A+K++ + + P +LVI
Sbjct: 195 FFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPNILVIH 254
Query: 248 LKRFEGINGGKINRNIEFKETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPDSGHYYAY 307
LKRF+ I + + ++ L + N +S Y+LF +VH G P+ GHY +
Sbjct: 255 LKRFKYIEQLGRYKKLSYRVVFPLELKLINTVDNSDLEYSLFAVLVHVGSGPNHGHYISL 314
Query: 308 VKDAIGRWYCCNDSHISPSSSQDVL------------SEKVYILFY 341
VK W +D ++ + V ++ YILFY
Sbjct: 315 VKSH-NHWLFFDDENVEMTDESMVQTFFGSAQEFSGNTDNGYILFY 359
>Os07g0661300 Similar to Ubiquitin-specific protease 24
Length = 489
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 109/355 (30%), Positives = 157/355 (44%), Gaps = 44/355 (12%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLCKKVLP--NKDKECV--FCVVERQI 80
LKN GN C+LNS LQ L S P + R+ N+ K P N E + F V++
Sbjct: 138 LKNTGNICFLNSSLQALLSCWPFVQLLQNLRNQNIPKAGYPTLNAFIEFISQFDVLDD-- 195
Query: 81 SRLLRTEAGALDSPAKII-----RCLPLFAEHFRWG-----RQEDAHEFLRYIIDACHTA 130
S + + E A + +I L F G RQEDA EFL + +D H
Sbjct: 196 SNVKKDEKFATIASKSVIPSMFDTVLRNFTPDVPAGTASRPRQEDAQEFLSFAMDRMHDE 255
Query: 131 GLRIR------KRLPASNANGDAGEEEVRVQGPYMVMKE----------TFGGALLSQVK 174
+++ K ++N D E V + +M+ FGG L S VK
Sbjct: 256 LVKLNGNGSNSKEGMIVSSNDDDAWETVGKKNKSAIMRSQSFVPSELTAIFGGQLQSCVK 315
Query: 175 CLTCKGESNKTDEIMDISLDL--PGSNSVADALARFFQPEILEGSNKYSCERCKK-LTSA 231
T S I LD+ + DAL F PE LEG Y K L +A
Sbjct: 316 A-TGNKASVTVQPFRLIHLDIFPDAVQKLDDALRLFAAPESLEG---YRTAAGKAGLVTA 371
Query: 232 RKQLFVLRAPKVLVIQLKRFE-GING-GKINRNIEFKETLFLS-DFMYNKNQDSLPV--Y 286
RK + + K++++ LKRF G +G K+ + I F L LS D + + + + + Y
Sbjct: 372 RKSVKIHSLSKIMILHLKRFSYGSHGCTKLFKPIHFPLELVLSRDLLSSPSSEHMQSRRY 431
Query: 287 NLFGSIVHSGFSPDSGHYYAYVKDAIGRWYCCNDSHISPSSSQDVLSEKVYILFY 341
L +I H G +P GHY A K A G+W +D +++P S VL ++ Y+LFY
Sbjct: 432 ELVATITHLGANPSRGHYTADAKSASGQWLRFDDDNVTPVSLNKVLHDQAYVLFY 486
>Os12g0489100 Similar to Ubiquitin-specific protease 12
Length = 551
Score = 87.0 bits (214), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 81/325 (24%), Positives = 142/325 (43%), Gaps = 51/325 (15%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPL--ATFCLSFRHSNLCKKVLPNKDKECVFCV--VERQI 80
LKN G TCY+NS+LQ L P A + + +++ +P + + + + +
Sbjct: 209 LKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDNSV 268
Query: 81 SRLLRTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDACHTAGLRIRKRLPA 140
+ T++ D+ + Q D E R + C +++
Sbjct: 269 ATKELTKSFGWDTYDSFM--------------QHDVQELNRVL---CEKLEDKMK----- 306
Query: 141 SNANGDAGEEEVRVQGPYMVMKETFGGALLSQVKCLTCKGESNKTDEIMDISLDLPGSNS 200
E V+G +++ F G ++ ++C+ +SN+ + D+ LD+ G +
Sbjct: 307 ----------ETVVEG---TIEQLFEGHHINYIECINVDYKSNRKESFYDLQLDVKGCSD 353
Query: 201 VADALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRFEG----ING 256
V + ++ + E LEG NKY E+ L A+K + L P VL +QLKRFE
Sbjct: 354 VYASFDKYVEVERLEGDNKYHAEQY-GLQDAKKGVLFLDFPPVLQLQLKRFEYDYMRDTM 412
Query: 257 GKINRNIEFKETLFL--SDFMY---NKNQDSLPVYNLFGSIVHSGFSPDSGHYYAYVKDA 311
KIN EF L L D Y + ++ +Y L +VHSG GHYYA+++
Sbjct: 413 VKINDRYEFPLQLDLDRDDGKYLAPDADRSIRNLYTLHSVLVHSG-GVHGGHYYAFIRPT 471
Query: 312 IG-RWYCCNDSHISPSSSQDVLSEK 335
+ +WY +D ++ ++ L E+
Sbjct: 472 LSDQWYKFDDERVTKEDTKKALEEQ 496
>Os03g0192800 Similar to Ubiquitin-specific protease 26
Length = 311
Score = 76.3 bits (186), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 35/230 (15%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLCKKVLPNKDKECVFCVVERQISRLL 84
L NLG TCY NS+LQCL S L K+ P D+ + R ++L
Sbjct: 108 LTNLGATCYANSILQCLYMNTSFRLGIFSLEPDIL--KMHPVLDQ------LARLFAQLH 159
Query: 85 RTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDACHTAGLRIRKRLPASNAN 144
++ +DS A I+ L L G Q+D+HEFL +
Sbjct: 160 SSKMAFIDS-APFIKTLEL-----DNGVQQDSHEFLTLFLSLL----------------- 196
Query: 145 GDAGEEEVRVQGPYMVMKETFGGALLSQVKCLTCKGES---NKTDEIMDISLDLPGSNSV 201
+ +V G +++ F G++ +C +C +S +K ++ ++ L++ G N++
Sbjct: 197 -EGSLSHSKVPGARTIVQHLFRGSVSHVTRCSSCGRDSEASSKMEDFYELELNIKGLNNL 255
Query: 202 ADALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRF 251
+L + E L+G N+Y CE C+K A + + + P V+ QLKR+
Sbjct: 256 EQSLDDYLSTEALDGENQYFCESCQKRVDATRCIKLRSLPPVVNFQLKRY 305
>Os11g0619500
Length = 1402
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 62/117 (52%), Gaps = 14/117 (11%)
Query: 239 RAPKVLVIQLKRFEGIN---GGKINRNIEFKETLFLSDFMYNKNQDSLPVYNLFGSIVHS 295
+AP VL IQLKRFE ++ GKI ++ F+ETL ++ +M + D+ Y L IVH
Sbjct: 1261 KAPPVLTIQLKRFEFVHDDGSGKIEEHVIFQETLDITKYMDTRYLDNEYKYCLVAVIVHG 1320
Query: 296 GFSPDSGHYYAYVKDA-----------IGRWYCCNDSHISPSSSQDVLSEKVYILFY 341
G D GHY+AYV+ + W+ ND + ++VL + YILFY
Sbjct: 1321 GQKLDGGHYFAYVRASRTGGQKRESSDTHSWFLANDEKVEEVLFENVLKCEAYILFY 1377
>Os11g0573000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 290
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/298 (25%), Positives = 128/298 (42%), Gaps = 50/298 (16%)
Query: 25 LKNLGNTCYLNSVLQCLASTPPL--ATFCLSFRHSNLCKKVLPNKDKECVFCV--VERQI 80
LKN G TCY+NS+LQ L P A + + +++ +P + + + + +
Sbjct: 24 LKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSGSIPLALQSLFYKLQYSDNSV 83
Query: 81 SRLLRTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDACHTAGLRIRKRLPA 140
+ T++ D+ + Q D E R + C ++++ +
Sbjct: 84 ATKELTKSFGWDTYDSFM--------------QHDVQELNRVL---CEKLEDKMKRTV-- 124
Query: 141 SNANGDAGEEEVRVQGPYMVMKETFGGALLSQVKCLTCKGESNKTDEIMDISLDLPGSNS 200
V+G +++ F G ++ ++C+ +SN+ + D+ LD+ G
Sbjct: 125 -------------VEG---TIEKLFEGHHINYIECINVDYKSNRKESFYDLQLDVKGCRD 168
Query: 201 VADALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRFE----GING 256
V + ++ + E LEG NKY E L A+K + L P VL +QLKRFE
Sbjct: 169 VYASFDKYVEVERLEGDNKYHAEN-HGLQDAKKGVLFLDFPPVLQLQLKRFEYDYMRDTM 227
Query: 257 GKINRNIEFKETLFL--SDFMY---NKNQDSLPVYNLFGSIVHSGFSPDSGHYYAYVK 309
KIN EF L L D Y + ++ +Y L +VHSG GHYYA+++
Sbjct: 228 VKINDRYEFPLQLDLDRDDGKYLAPDADRSIRNLYALHSVLVHSG-GVHGGHYYAFIR 284
>Os08g0528000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 787
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 17/175 (9%)
Query: 179 KGESNKTDEIMDISLDLPGSNSVADALARFFQPEILEGSNKYSCERC----KKLTSARKQ 234
KG++ ++ I + + D+ S+ + L F+ E +E +CE C +KL + Q
Sbjct: 613 KGKTRSSNIICNKAQDINSLASIEECLELHFEAETVE----LTCENCSKFAQKLNKSVIQ 668
Query: 235 LFVLRAPKVLVIQLKRFEGINGGKINRNIEFKETLFLSDFMYNKNQD-SLPVYNLFGSIV 293
+ P VLVI LKR + K+ ++ FKE L + FM + D +Y L I
Sbjct: 669 TRLSLLPPVLVIHLKR-SLLQSDKVKGHVSFKEILDVGLFMDPSSVDKDNSIYRLASVIE 727
Query: 294 HSGFSPDSGHYYAYVK-------DAIGRWYCCNDSHISPSSSQDVLSEKVYILFY 341
H G DSGH+ AYV+ + W+ +D+ I ++VL + Y+LFY
Sbjct: 728 HHGHGKDSGHFVAYVRQSRPQQTNGSSSWFWASDTDIREVPLEEVLKCEAYLLFY 782
>Os10g0160000 Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15)
(Ubiquitin thiolesterase 12) (Ubiquitin-specific
processing protease 12) (Deubiquitinating enzyme 12)
Length = 931
Score = 69.3 bits (168), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 205 LARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRF--EGINGGKINRN 262
L F + E L + + C RC + A K+L + R P++LV+ LKRF K++
Sbjct: 766 LDAFLKDEPLGPDDMWYCPRCTEHKQASKKLDLWRLPEILVVHLKRFSYSRFMKNKLDTF 825
Query: 263 IEFK-ETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPDSGHYYAYVKDA-IGRWYCCND 320
+ F L +S + + D P+Y L+ I H G GHY AY K WY +D
Sbjct: 826 VNFPIHDLDMSRYANHSRGDQPPIYELYAVINHYGGM-GGGHYSAYAKLVEEDSWYHFDD 884
Query: 321 SHISPSSSQDVLSEKVYILFY 341
SH+S +D+ + Y+LFY
Sbjct: 885 SHVSSVGEEDIRTSSAYLLFY 905
>Os12g0621000 Similar to Ubiquitin-specific protease 8 (Fragment)
Length = 864
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 205 LARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRF--EGINGGKINRN 262
L F + E L + + C CK+ A K+L + R P++L+I LKRF K+
Sbjct: 701 LEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTKNKLETC 760
Query: 263 IEFK-ETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPDSGHYYAYV-KDAIGRWYCCND 320
++F L LS ++ ++ Q Y L+ H G S GHY AYV + WY +D
Sbjct: 761 VDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYG-SMGGGHYTAYVYHEGKKGWYDFDD 819
Query: 321 SHISPSSSQDVLSEKVYILFY 341
H+ P S + + + Y+LFY
Sbjct: 820 RHVGPISEESIKTSAAYVLFY 840
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 19,961,706
Number of extensions: 817463
Number of successful extensions: 2061
Number of sequences better than 1.0e-10: 21
Number of HSP's gapped: 2029
Number of HSP's successfully gapped: 21
Length of query: 644
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 537
Effective length of database: 11,448,903
Effective search space: 6148060911
Effective search space used: 6148060911
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)