Os12g0621000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquitin-specific protease 8 (Fragment).
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Os12g0621000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin-specific protease 8 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.53 | 0.476 | 6.11 | -0.387 | 0.824 | -0.72 | -0.481 | 6.54 | -0.0399 | 5.05 | 20.63 | 3766 | -- | -- |
| 127.9 | 0.531 | 6.35 | -2.17 | 0.605 | -1.15 | -1.45 | -- | -0.48 | 7.1 | 8.924 | 17617 | -- | -- |
| 102.85 | 0.472 | 6.12 | -0.354 | 0.815 | -0.77 | -- | 6.67 | -0.0337 | 4.85 | 21.1 | 3673 | -- | -- |
| 130.07 | 0.531 | 6.31 | -1.78 | 0.823 | -0.846 | -- | -- | -0.306 | 5.01 | -17.49 | 18093 | -- | -- |
| 136.88 | 0.545 | 6.1 | -0.0517 | -- | -0.915 | -- | 7.74 | 0.051 | -- | 22.36 | 3346 | -- | -- |
| 140.1 | 0.555 | 6.38 | -2.42 | 0.822 | -- | -0.57 | -- | -0.642 | 5.37 | -- | -- | -- | -- |
| 140.71 | 0.555 | 6.38 | -2.42 | 0.818 | -- | -- | -- | -0.64 | 5.11 | -- | -- | -- | -- |
| 152.3 | 0.577 | 6.35 | -2.16 | -- | -1.28 | -- | -- | -0.449 | -- | -11.92 | 16381 | -- | -- |
| 160.16 | 0.589 | 6.2 | -- | 0.833 | -1.87 | -- | -- | 0.189 | 4.96 | -17.79 | 47520 | -- | -- |
| 175.81 | 0.62 | 6.39 | -2.39 | -- | -- | -- | -- | -0.619 | -- | -- | -- | -- | -- |
| 295.39 | 0.804 | 6.32 | -- | 0.776 | -- | -- | -- | -0.37 | 5.22 | -- | -- | -- | -- |
| 196.69 | 0.653 | 6.21 | -- | -- | -1.83 | -- | -- | 0.196 | -- | -17.59 | 47520 | -- | -- |
| 326.92 | 0.844 | 6.33 | -- | -- | -- | -- | -- | -0.354 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.63 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 2 | 93.64 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 3 | 93.71 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 4 | 93.95 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 7 | 94.93 | wind | 1 | 43200 | < th | dose dependent | rect. | 19 | 7 |
| 9 | 95.38 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 10 | 95.86 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 5 |
| 12 | 96.12 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 10 |
| 13 | 96.15 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 12 |
| 15 | 96.27 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 16 | 96.30 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 24 | 97.90 | wind | 1 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 26 | 98.36 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 38 | 98.88 | radiation | 40 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 39 | 99.01 | radiation | 20 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 40 | 99.02 | radiation | 1 | 43200 | < th | dose dependent | rect. | 20 | 9 |
| 42 | 99.04 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 43 | 99.05 | radiation | 10 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 47 | 99.10 | radiation | 40 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 57 | 99.34 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 62 | 99.42 | radiation | 10 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 78 | 99.47 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 109 | 99.59 | radiation | 30 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 113 | 99.63 | radiation | 1 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 114 | 99.66 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 157 | 99.85 | radiation | 20 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 181 | 100.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 205 | 100.04 | radiation | 20 | 43200 | > th | dose independent | sin | 8 | NA |
| 213 | 100.09 | humidity | 60 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 233 | 100.12 | radiation | 40 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 237 | 100.15 | radiation | 30 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 238 | 100.15 | radiation | 40 | 43200 | < th | dose dependent | rect. | 12 | 2 |
| 263 | 100.19 | radiation | 40 | 43200 | > th | dose independent | sin | 23 | NA |
| 276 | 100.23 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 307 | 100.28 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 444 | 100.28 | radiation | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 582 | 100.48 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 583 | 100.48 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 601 | 100.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 18 | 4 |
| 674 | 100.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 714 | 100.62 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 842 | 100.80 | radiation | 30 | 43200 | < th | dose dependent | sin | 5 | NA |
| 1000 | 100.96 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 1 |