BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0621000 Os12g0621000|Os12g0621000
(864 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0621000 Similar to Ubiquitin-specific protease 8 (Frag... 1718 0.0
Os07g0160000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 786 0.0
Os10g0160000 Similar to Ubiquitin carboxyl-terminal hydrola... 580 e-165
Os04g0647300 Similar to Ubiquitin-specific protease 22 94 5e-19
Os08g0478500 Peptidase C19, ubiquitin carboxyl-terminal hyd... 92 2e-18
Os06g0654000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 87 4e-17
Os12g0536600 85 3e-16
Os02g0573400 Peptidase C19, ubiquitin carboxyl-terminal hyd... 83 1e-15
Os09g0464400 Peptidase C19, ubiquitin carboxyl-terminal hyd... 82 2e-15
Os04g0452400 Similar to Ubiquitin carboxyl-terminal hydrola... 79 2e-14
Os09g0505100 Peptidase C19, ubiquitin carboxyl-terminal hyd... 78 4e-14
Os02g0244300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 75 2e-13
Os06g0184300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 73 1e-12
Os03g0190800 Similar to Ubiquitin carboxyl-terminal hydrola... 73 1e-12
Os09g0407900 Peptidase C19, ubiquitin carboxyl-terminal hyd... 68 3e-11
Os05g0510300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 68 4e-11
>Os12g0621000 Similar to Ubiquitin-specific protease 8 (Fragment)
Length = 864
Score = 1718 bits (4449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 824/836 (98%), Positives = 824/836 (98%)
Query: 29 RVFLVLHRWWRXXXXXXXXXXXXVPYAAAPSGPTSYGIGMKVLSMFISDQAFTLRRADDL 88
RVFLVLHRWWR VPYAAAPSGPTSYGIGMKVLSMFISDQAFTLRRADDL
Sbjct: 29 RVFLVLHRWWREAQEGGGIEAAGVPYAAAPSGPTSYGIGMKVLSMFISDQAFTLRRADDL 88
Query: 89 LQPDASASNAASSRTYALVAADLFSKARAWHIDSGKNAGKKSLSIEEGSVNIYPIMLRVS 148
LQPDASASNAASSRTYALVAADLFSKARAWHIDSGKNAGKKSLSIEEGSVNIYPIMLRVS
Sbjct: 89 LQPDASASNAASSRTYALVAADLFSKARAWHIDSGKNAGKKSLSIEEGSVNIYPIMLRVS 148
Query: 149 VTRDTNALTVKISKKDNSAENFKRANKILTSDSEPVHIWDFSGRTTFILMNEWNRMPQDT 208
VTRDTNALTVKISKKDNSAENFKRANKILTSDSEPVHIWDFSGRTTFILMNEWNRMPQDT
Sbjct: 149 VTRDTNALTVKISKKDNSAENFKRANKILTSDSEPVHIWDFSGRTTFILMNEWNRMPQDT 208
Query: 209 RSSDQEMPLEIHFYDLSEPTANGTNGKKDELALTMSRSMSNGSIMGMDLDSSGSSKQVGT 268
RSSDQEMPLEIHFYDLSEPTANGTNGKKDELALTMSRSMSNGSIMGMDLDSSGSSKQVGT
Sbjct: 209 RSSDQEMPLEIHFYDLSEPTANGTNGKKDELALTMSRSMSNGSIMGMDLDSSGSSKQVGT 268
Query: 269 GLIGLDNLGNTCFMNSAVQCLAHTSKLGELAYSFGDLLRKLWALDRTPVAPRQFKGKLAR 328
GLIGLDNLGNTCFMNSAVQCLAHTSKLGELAYSFGDLLRKLWALDRTPVAPRQFKGKLAR
Sbjct: 269 GLIGLDNLGNTCFMNSAVQCLAHTSKLGELAYSFGDLLRKLWALDRTPVAPRQFKGKLAR 328
Query: 329 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYSEAKDSDGRPDEEVADEYWGNHIA 388
FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYSEAKDSDGRPDEEVADEYWGNHIA
Sbjct: 329 FAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYSEAKDSDGRPDEEVADEYWGNHIA 388
Query: 389 RNDSIIVDICQGQYKSTLVCPDCRKVSVTFDPFMYLSLPLPSTTMRTMTITVFNTDGTTG 448
RNDSIIVDICQGQYKSTLVCPDCRKVSVTFDPFMYLSLPLPSTTMRTMTITVFNTDGTTG
Sbjct: 389 RNDSIIVDICQGQYKSTLVCPDCRKVSVTFDPFMYLSLPLPSTTMRTMTITVFNTDGTTG 448
Query: 449 PSPYTVSVPKSGDTKTLIDALSIACSLKGDERLLVAEVYNSALIRYLEEPSEVISLIRDG 508
PSPYTVSVPKSGDTKTLIDALSIACSLKGDERLLVAEVYNSALIRYLEEPSEVISLIRDG
Sbjct: 449 PSPYTVSVPKSGDTKTLIDALSIACSLKGDERLLVAEVYNSALIRYLEEPSEVISLIRDG 508
Query: 509 DRLVAYKLPKDSEDAPIVVFRNQRMESTLTSFGRKSWKSFGTPLVSSLPDTINGSTIFEL 568
DRLVAYKLPKDSEDAPIVVFRNQRMESTLTSFGRKSWKSFGTPLVSSLPDTINGSTIFEL
Sbjct: 509 DRLVAYKLPKDSEDAPIVVFRNQRMESTLTSFGRKSWKSFGTPLVSSLPDTINGSTIFEL 568
Query: 569 YQKVMTPFRVPKDDSSGADHIIGKSSPVEETTDVDMNSDATESTSINNNDCDDETMTEDG 628
YQKVMTPFRVPKDDSSGADHIIGKSSPVEETTDVDMNSDATESTSINNNDCDDETMTEDG
Sbjct: 569 YQKVMTPFRVPKDDSSGADHIIGKSSPVEETTDVDMNSDATESTSINNNDCDDETMTEDG 628
Query: 629 MQFYFINERFPDQRMKIEMDQPIRLTASQKRLHVVDNGLEQYNFSSLDNLPEIYKAVLFS 688
MQFYFINERFPDQRMKIEMDQPIRLTASQKRLHVVDNGLEQYNFSSLDNLPEIYKAVLFS
Sbjct: 629 MQFYFINERFPDQRMKIEMDQPIRLTASQKRLHVVDNGLEQYNFSSLDNLPEIYKAVLFS 688
Query: 689 RRPQETCSLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFS 748
RRPQETCSLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFS
Sbjct: 689 RRPQETCSLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFS 748
Query: 749 YSRYTKNKLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSMGGGHYTAYVYH 808
YSRYTKNKLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSMGGGHYTAYVYH
Sbjct: 749 YSRYTKNKLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSMGGGHYTAYVYH 808
Query: 809 EGKKGWYDFDDRHVGPISEESIKTSAAYVLFYRRIQGDDNRLDDTETGIDSSDCTT 864
EGKKGWYDFDDRHVGPISEESIKTSAAYVLFYRRIQGDDNRLDDTETGIDSSDCTT
Sbjct: 809 EGKKGWYDFDDRHVGPISEESIKTSAAYVLFYRRIQGDDNRLDDTETGIDSSDCTT 864
>Os07g0160000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 911
Score = 786 bits (2030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 430/885 (48%), Positives = 540/885 (61%), Gaps = 95/885 (10%)
Query: 30 VFLVLHRWWRXXXXXXXXXXXXVPYAAAPSGPTSYGIGMKVLSMFISDQAFTLRRADDLL 89
V LV RWW V A P G G+ + + LR L
Sbjct: 32 VCLVPFRWW-----------ARVREEAPPEG----GVRYAATAAASPSSYYGLRLLHSFL 76
Query: 90 QPD----------ASASNAASSRTYALVAADLFSKARAWHIDSGKNAGKKSLSIEEGSVN 139
PD A R+YALV AD S+ A S K S + E S
Sbjct: 77 HPDLVLRLERGGCRGTGAGAGGRSYALVPADELSRVLARQNSSLALHNKHSFA--EDSAG 134
Query: 140 IYPIMLRVSVTRDTNALTVKISKKDNSAENFKRANKILTSDSEPVHIWDFSGRTTFILMN 199
YP++LR+SV R+T+ LTVKISKKDN EN+KRA KI DS+PVH+WDFSG+T ILMN
Sbjct: 135 AYPLVLRISV-RETSILTVKISKKDNPVENYKRAYKIFNIDSQPVHVWDFSGQTNLILMN 193
Query: 200 EWNRMPQDTRSSDQEMPLEIHFYDLSEPTANGTNGKKDELALTMSRSMSNGSIMGMDLDS 259
EWNR D S+ E LE+ Y +S+ + G E +S ++ + M +DL
Sbjct: 194 EWNRSNHDCCHSELENILEVQVYAMSDSLTSKIGGTSKEYT---EQSSADVNDMDVDLSY 250
Query: 260 SGSSKQVGTGLIGLDNLGNTCFMNSAVQCLAHTSKL---------------------GEL 298
+ GLIGL+NLGNTCFMNS++QCLAHTSKL GEL
Sbjct: 251 GSFGRSSSHGLIGLENLGNTCFMNSSIQCLAHTSKLVDYFLGDYDRDINRTNPLGLNGEL 310
Query: 299 AYSFGDLLRKLWALDRTPVAPRQFKGKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNR 358
A +FG+LLR+LW +R PV+P FK K+A FAPQFSGFNQHDSQELLAFLLDGLHEDLN+
Sbjct: 311 ALAFGELLRRLWNTERKPVSPHHFKAKIACFAPQFSGFNQHDSQELLAFLLDGLHEDLNQ 370
Query: 359 VKCKPYSEAKDSDGRPDEEVADEYWGNHIARNDSIIVDICQGQYKSTLVCPDCRKVSVTF 418
VKCKPY EAKD+ GRPD+EVADEYW NH+ARNDS+IVD GQYKSTL CP C K SVTF
Sbjct: 371 VKCKPYEEAKDASGRPDKEVADEYWSNHLARNDSVIVDTYHGQYKSTLTCPTCSKTSVTF 430
Query: 419 DPFMYLSLPLPSTTMRTMTITVFNTDGTTGPSPYTVSVPKSGDTKTLIDALSIACSLKGD 478
DPFMYLSLP+PST RTMT+TVF+TDG+ P Y V+VP+ G L+ ALS ACSL D
Sbjct: 431 DPFMYLSLPVPSTAKRTMTVTVFSTDGSIEPISYDVTVPQFGSLNDLVQALSSACSLGDD 490
Query: 479 ERLLVAEVYNSALIRYLEEPSEVISLIRDGDRLVAYKLPKDSEDAPIVVFRNQRM-ESTL 537
E LL+ EVYN+ ++RYLEEPS+ +SL+RDGD+L A++LP+ E +P+VVF +Q E +
Sbjct: 491 EILLITEVYNNRILRYLEEPSDSVSLLRDGDKLAAFRLPRKYEKSPVVVFTHQYFDERSS 550
Query: 538 TSFGRKSWKSFGTPLVSSLPDTINGSTIFELYQKVMTPFRVPKDDS---------SGADH 588
K F PL++ LP+ NG T+ +Y K++ P R K S SG
Sbjct: 551 IDNITPQMKEFEAPLLAVLPERANGLTLKNIYLKLLEPLRFSKSTSSLNDSGRCNSGCAA 610
Query: 589 IIGKSSP------------------VEETTDVDMNSDATESTSINNNDCDDETMTEDGMQ 630
++ ++P ET + M +ES + D D E E+ +
Sbjct: 611 VMMDATPDSDSKFQSAPSENAPESSQSETIECQMTEGPSESNIGDTTDSDREAHMEE-FE 669
Query: 631 FYFINERFPDQRMKIEMDQPIRLTASQKRL----HVVDNGLEQYNFSSLDNLPEIYKAVL 686
FY IN R Q+ +I+ D+ + L + RL H N + QY+ S L +LPEI+K L
Sbjct: 670 FYLINGRGEFQQTRIQTDE-VDLQTTPNRLLINVHWQQNAVGQYDTSMLKSLPEIHKLEL 728
Query: 687 FSRRPQETCSLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKR 746
+ +++ +L+ CLEAF+KEEPLGPEDMWYCP CK+H+QA KKLDLWRLPE+L+IHLKR
Sbjct: 729 IPKGNEDSVALHGCLEAFLKEEPLGPEDMWYCPCCKKHQQAMKKLDLWRLPEVLVIHLKR 788
Query: 747 FSYSRYTKNKLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSMGGGHYTAYV 806
FSY+++T+NKLET VDFP+ DLDLS YI + + HYRLYAISNHYG+MGGGHYTA +
Sbjct: 789 FSYTQFTRNKLETFVDFPISDLDLSSYIIDKSELSDCHYRLYAISNHYGNMGGGHYTASI 848
Query: 807 YHEGKKGWYDFDDRHVGPISEESIKTSAAYVLFYRRIQGDDNRLD 851
YHE KGWY FDD V PI+E+SIKT AAY D RLD
Sbjct: 849 YHEEGKGWYKFDDECVRPITEDSIKTPAAY---------DQTRLD 884
>Os10g0160000 Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15)
(Ubiquitin thiolesterase 12) (Ubiquitin-specific
processing protease 12) (Deubiquitinating enzyme 12)
Length = 931
Score = 580 bits (1495), Expect = e-165, Method: Compositional matrix adjust.
Identities = 357/809 (44%), Positives = 479/809 (59%), Gaps = 80/809 (9%)
Query: 104 YALVAADLFSKARAWHIDSGKNAGKKSLSIEEGS----VNIYPIMLRVSVTRDTNALTVK 159
YALV +++ K W+ G ++ + S V++YP+ L++ RD+ ++
Sbjct: 111 YALVPQEVWRKLHEWY-KGGPELSRRVICSSPTSRSYIVDVYPLRLKLFDGRDSLERIIR 169
Query: 160 ISKKDNSAENFKRANKILTSDSEPVHIWDFSGRTT---FILMNEWNRMPQDTRSSDQEMP 216
IS+K +E + +L+ + + IWDF +T I +NE + + DQE+
Sbjct: 170 ISRKAKVSELYSLVCSLLSVEQSKIDIWDFYQKTKGKKLINLNE--TVEEAQLMMDQEII 227
Query: 217 LEIHFYDLSEPTANGTNGKKDELALTMSRSMSNGSIMG---------------MDLDSS- 260
+E D + + GT + + + S S+ SI G D+S
Sbjct: 228 IEAKADD-AWCSDLGTRSNNELALIPLEPSTSSFSIAGGPAFSNGFSSGFGSSFSQDNSF 286
Query: 261 ---------GSSKQVGT-----GLIGLDNLGNTCFMNSAVQCLAHTSKL----------- 295
G S GT GL GL NLGNTCFMNSA+Q L HT L
Sbjct: 287 SPLLRDAEDGYSFSNGTKDDIHGLSGLHNLGNTCFMNSAIQSLVHTPPLVEYFLQDYSRE 346
Query: 296 ----------GELAYSFGDLLRKLWALDRTPVAPRQFKGKLARFAPQFSGFNQHDSQELL 345
GELA +FG+LLRKLW+ RT +APR FK KL+RFAPQFSG+NQHDSQELL
Sbjct: 347 INTENPLGLQGELATAFGELLRKLWSAGRTSIAPRPFKTKLSRFAPQFSGYNQHDSQELL 406
Query: 346 AFLLDGLHEDLNRVKCKPYSEAKDSDGRPDEEVADEYWGNHIARNDSIIVDICQGQYKST 405
AFLLDGLHEDLNRVK KPY EAKD+DGRPDEE+A+E W H ARNDSIIVD QGQYKST
Sbjct: 407 AFLLDGLHEDLNRVKKKPYIEAKDADGRPDEELAEECWNYHKARNDSIIVDKFQGQYKST 466
Query: 406 LVCPDCRKVSVTFDPFMYLSLPLPSTTMRTMTITVFNTDGTTGPSPYTVSVPKSGDTKTL 465
LVCPDC+K+SVTFDPFMYLSLPLPST R + +TVF+ G P PYTV V K+G L
Sbjct: 467 LVCPDCKKISVTFDPFMYLSLPLPSTVTRMINVTVFSGTGDALPMPYTVKVQKNGVCGDL 526
Query: 466 IDALSIACSLKGDERLLVAEVYNSALIRYLEEPSEVISLIRDGDRLVAYKLPKDSEDAPI 525
I +LS+ C L+ E LL+AEVY+ + RY PSE + ++D D+LVAY+LP SE+
Sbjct: 527 IKSLSVMCCLQSCETLLLAEVYDHRIYRYW-NPSEPLCHVKDEDKLVAYRLPVGSENLLR 585
Query: 526 VVFRNQRMES-TLTSFGRKSWKSFGTPLVSSLP-DTINGSTIFELYQKVMTPFRVPK--- 580
V ++ ++ T S S K G+PLV+ +P D+ + I+ ++ PF K
Sbjct: 586 VEILHRVVDRYTSESMFNLSRKLIGSPLVTCIPSDSTRKADIYATVSSLLAPFVRAKVHT 645
Query: 581 -DDSSGADHIIGKSSPVEETTDVDMNSDATESTSINNNDCDDETMTEDGMQF-YFINERF 638
D+S+ + G S TD + + STS + D+E E+ + F ++ +
Sbjct: 646 LDESATKLNSNGPSLDGIVLTDNGVTCEEDVSTS----NVDEEAADEEVLPFQLWLTDDK 701
Query: 639 PDQRMKIEMDQPIRLTASQKRLHV--VDNGLEQYNFSSLDNLPEIYKAVLFSRRP-QETC 695
++R I+ D + S RL + D E Y+ +D L ++K S++ QE
Sbjct: 702 ANKREHIDADSN-GVPGSTMRLLMDWSDREHEVYDIKYMDELSVVFKPGFMSKKNRQEAV 760
Query: 696 SLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTKN 755
+L++CL+AF+K+EPLGP+DMWYCP C EH+QASKKLDLWRLPEIL++HLKRFSYSR+ KN
Sbjct: 761 NLFSCLDAFLKDEPLGPDDMWYCPRCTEHKQASKKLDLWRLPEILVVHLKRFSYSRFMKN 820
Query: 756 KLETCVDFPVHDLDLSKYIG-SRGQQISNHYRLYAISNHYGSMGGGHYTAYVYHEGKKGW 814
KL+T V+FP+HDLD+S+Y SRG Q Y LYA+ NHYG MGGGHY+AY + W
Sbjct: 821 KLDTFVNFPIHDLDMSRYANHSRGDQ-PPIYELYAVINHYGGMGGGHYSAYAKLVEEDSW 879
Query: 815 YDFDDRHVGPISEESIKTSAAYVLFYRRI 843
Y FDD HV + EE I+TS+AY+LFYRR+
Sbjct: 880 YHFDDSHVSSVGEEDIRTSSAYLLFYRRV 908
>Os04g0647300 Similar to Ubiquitin-specific protease 22
Length = 591
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 85/167 (50%), Gaps = 25/167 (14%)
Query: 696 SLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTK- 754
+L CLE F + E L E ++C CKE +++ K++ + RLP + H+KRF +S K
Sbjct: 412 TLMRCLERFTRAERLDAEQKFFCERCKERQESLKQMSIRRLPLVSCFHIKRFEHSSVKKM 471
Query: 755 -NKLETCVDFPVHDLDLSKYIGSR------GQQI--------------SNHYRLYAISNH 793
K++ C+ FP LD++ Y+ S G +I S+ + ++A+ H
Sbjct: 472 SRKVDHCLQFPF-SLDMAPYLSSSILRSRFGNRIFPSEASDADSVSEFSSEFEIFAVIMH 530
Query: 794 YGSMGGGHYTAYVYHEGKKGWYDFDDRHVGPISEESIKTSAAYVLFY 840
G + GHY Y+ WY DD V + E +++TS AY+LFY
Sbjct: 531 SGKLEAGHYVTYL--RLNNHWYKCDDAWVTRVEEHTVRTSQAYMLFY 575
>Os08g0478500 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 978
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 75/150 (50%), Gaps = 7/150 (4%)
Query: 696 SLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTKN 755
SL LE F E L ++ + C CK H +A KKL + P +L I LKR+ ++
Sbjct: 610 SLEGALERFTSTEVLDGDNKYKCSRCKSHERAKKKLTISEAPNVLTIALKRYQSGKF--G 667
Query: 756 KLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSMGG---GHYTAYVYHEGKK 812
K+ + FP L+L +Y+ + S Y LYA+ H+ M GHY YV K
Sbjct: 668 KINKAIRFP-ETLNLQRYMSPKADDTSPVYSLYAVVVHHDIMNAAFSGHYVCYVKDTHGK 726
Query: 813 GWYDFDDRHVGPISEESIKTSAAYVLFYRR 842
WY DD V P+S E++ + AY+L Y R
Sbjct: 727 -WYKTDDSQVKPVSLENVMSKCAYMLLYAR 755
>Os06g0654000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 944
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 55/151 (36%), Positives = 79/151 (52%), Gaps = 11/151 (7%)
Query: 696 SLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTKN 755
SL CL+ F E L ++ + C GC ++ +A K+L +++ P IL I LKRF R+
Sbjct: 242 SLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRFQSGRF--G 299
Query: 756 KLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSMGG---GHYTAYVY-HEGK 811
KL V FP+ LDL+ Y+ S S+ Y LYA+ H + GHY Y+ + G+
Sbjct: 300 KLNKRVTFPM-KLDLTPYMSS--TDGSDQYDLYAVVVHLDMLNASFFGHYICYIKNYRGR 356
Query: 812 KGWYDFDDRHVGPISEESIKTSAAYVLFYRR 842
WY DD V + EE + AY+L Y R
Sbjct: 357 --WYKIDDCKVMAVDEEEVHAQGAYMLLYSR 385
>Os12g0536600
Length = 98
Score = 84.7 bits (208), Expect = 3e-16, Method: Composition-based stats.
Identities = 33/43 (76%), Positives = 41/43 (95%)
Query: 717 YCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTKNKLET 759
YCP CK+H+QA KKLDLWRLPE+L+IHLKRFSY+++T+NKLET
Sbjct: 17 YCPCCKKHQQAMKKLDLWRLPEVLVIHLKRFSYTQFTRNKLET 59
>Os02g0573400 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 415
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 29/173 (16%)
Query: 692 QETCSLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSY-- 749
++ SL +CL++F E L ED ++C C ++A K++ + + P +L+IHLKRF Y
Sbjct: 251 EQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKYVE 310
Query: 750 --SRYTKNKLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSM-GGGHYTAYV 806
SR+ KL V +P L +GS + Y L+A+ H GS GHY + +
Sbjct: 311 QLSRH--KKLSYRVVYP-----LELKLGSMSEDADCEYSLFAVVVHVGSSPNHGHYVSQI 363
Query: 807 YHEGKKGWYDFDDRHVGPISEESI--------------KTSAAYVLFYRRIQG 845
G W FDD V ISEES T Y+LFY R+ G
Sbjct: 364 KSHG--NWLSFDDDTV-QISEESTLQTFYGSSREHCGGNTDHGYILFYERLGG 413
>Os09g0464400 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 918
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 76/150 (50%), Gaps = 8/150 (5%)
Query: 696 SLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTKN 755
+L L F E L ++ + C CK + +A KKL + P IL I LKR+ +
Sbjct: 555 TLEEALHRFTSTEILDGDNRYNCSRCKSYERAKKKLTISEAPNILTIALKRYQSGNF--G 612
Query: 756 KLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSMGG---GHYTAYVYHEGKK 812
K+ V F + L+LS Y+ S IS Y+LYA+ H+ M GHY YV + +
Sbjct: 613 KINKAVRFTEY-LNLSNYM-STADDISPVYQLYAVVVHHDVMNAAFSGHYVCYV-KDTQG 669
Query: 813 GWYDFDDRHVGPISEESIKTSAAYVLFYRR 842
W+ DD V P+S E + + AY+LFY R
Sbjct: 670 KWHKMDDSQVKPVSLEKVLSKCAYMLFYAR 699
>Os04g0452400 Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)
(Ubiquitin- specific processing protease 4) (AtUBP4)
Length = 367
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 82/171 (47%), Gaps = 27/171 (15%)
Query: 692 QETCSLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSY-- 749
++ S+ +CL+ F E L ED ++C C ++A K++ + + P IL+IHLKRF Y
Sbjct: 205 EQNSSITSCLKNFCSTETLNAEDKFFCDKCCSLQEAQKRMKIKKAPHILVIHLKRFKYIE 264
Query: 750 --SRYTKNKLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSM-GGGHYTAYV 806
RY KL V FP+ +L LS + Y L+A+ H GS GHY + V
Sbjct: 265 QLGRY--KKLSYRVVFPM-ELKLST-----SDDVDTEYSLFAVVVHVGSGPNHGHYVSLV 316
Query: 807 YHEGKKGWYDFDDRHVGPISEESIK------------TSAAYVLFYRRIQG 845
+ W FDD +V + E +++ T Y+LFY + G
Sbjct: 317 --KSHNHWLFFDDENVEMVEESTLQTFFGSSHEYSGNTDHGYILFYEGLGG 365
>Os09g0505100 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 1055
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 78/177 (44%), Gaps = 32/177 (18%)
Query: 267 GTGLIGLDNLGNTCFMNSAVQCLAHTSKL-----------GELAYSFGDLLRKLWALDRT 315
G+ + GL NLGNTCF N+ +Q L +L G L S L + A +
Sbjct: 221 GSVIRGLPNLGNTCFFNAVMQSLLALDRLRSKMLGPDVPTGALLMSLKKLFMETSASNDV 280
Query: 316 --PVAPRQFKGKLARFAPQFSGFNQHDSQELLAFLLDGLHEDLNRVKCKPYSEAKDSDGR 373
++P+ + PQF GF DS ELL LDGLH + N +
Sbjct: 281 GGALSPKNLFSNICSKYPQFRGFQMQDSHELLRCFLDGLHTEENEAR------------- 327
Query: 374 PDEEVADEYWGNHIARNDSIIVDICQGQYKSTLVCPDCRKVSVTFDPFMYLSLPLPS 430
++ADE I +I+ I GQ ST+ +C SV D F+ LSLP+PS
Sbjct: 328 ---KLADEASSATIP---TIVDSIFGGQLSSTVSSTECTHSSVKHDQFLDLSLPVPS 378
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 13/136 (9%)
Query: 720 GCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTK-NKLETCVDFPVHDLDLSKYIGSRG 778
G K R A +++ + + P +L I+L RFS + + KL+ V F LD+ ++ R
Sbjct: 919 GKKVFRSAMRRILISKAPPVLTINLNRFSQDSHGRFKKLKGHVHFK-ETLDVRPFMDPRS 977
Query: 779 QQISNH-YRLYAISNHYGSMGGGHYTAYV----------YHEGKKGWYDFDDRHVGPISE 827
++ N YRL + H G+M GHY AYV G K W+ D V S
Sbjct: 978 KENDNTTYRLVGVVEHLGTMAAGHYVAYVRTGKIGGRQQRSTGSKSWFYASDAQVREASL 1037
Query: 828 ESIKTSAAYVLFYRRI 843
E + AY+LFY R+
Sbjct: 1038 EEVLNCEAYILFYERV 1053
>Os02g0244300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 975
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 72/150 (48%), Gaps = 8/150 (5%)
Query: 696 SLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTKN 755
SL L F E L E+M+ C C + +A K+L + +P IL + LKRF +Y
Sbjct: 602 SLQDALTQFTAPEDLDGENMYKCGRCSAYVKARKQLSVHEVPNILTVVLKRFQTGKY--G 659
Query: 756 KLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSMGG---GHYTAYVYHEGKK 812
K+ CV FP LD+ ++ G Y LYA+ H + GHY +YV + +
Sbjct: 660 KINKCVTFP-DMLDMVPFVTGAGDN-PPLYFLYAVVVHVDTENASFSGHYISYV-KDMQG 716
Query: 813 GWYDFDDRHVGPISEESIKTSAAYVLFYRR 842
W DD V +S + + AY+LFY R
Sbjct: 717 TWLRIDDSEVQAVSLNQVMSEGAYMLFYMR 746
>Os06g0184300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 899
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 75/151 (49%), Gaps = 10/151 (6%)
Query: 696 SLYACLEAFIKEEPL-GPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTK 754
SL L+ F EE L G E + C C++ A KK + + P +L IHLKRFS +
Sbjct: 218 SLVRALQNFTAEELLDGGEKQYQCQRCRKKVVAKKKFTIDKAPYVLTIHLKRFS-PFNPR 276
Query: 755 NKLETCVDF-PVHDLDLSKYIG-SRGQQISNHYRLYAISNHYG-SMGGGHYTAYVYHEGK 811
K++ VDF P+ LDL +I S+G Y LY + H G + GHY +V
Sbjct: 277 EKIDKKVDFQPM--LDLKPFISDSKGADFK--YSLYGVLVHAGWNTQSGHYYCFV-RTSS 331
Query: 812 KGWYDFDDRHVGPISEESIKTSAAYVLFYRR 842
W++ DD V + E + AY+LFY R
Sbjct: 332 GMWHNLDDNQVRQVREADVLRQKAYMLFYVR 362
>Os03g0190800 Similar to Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15)
(Ubiquitin- specific processing protease 3) (AtUBP3)
Length = 366
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 80/169 (47%), Gaps = 26/169 (15%)
Query: 692 QETCSLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSY-- 749
++ S+ +CL+ F E L ED ++C C ++A K++ + + P IL+IHLKRF Y
Sbjct: 203 EQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPNILVIHLKRFKYIE 262
Query: 750 --SRYTKNKLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSM-GGGHYTAYV 806
RY KL V FP+ +L L + + + Y L+A+ H GS GHY + V
Sbjct: 263 QLGRY--KKLSYRVVFPL-ELKLINTVDNSDLE----YSLFAVLVHVGSGPNHGHYISLV 315
Query: 807 YHEGKKGWYDFDDRHV------------GPISEESIKTSAAYVLFYRRI 843
+ W FDD +V G E S T Y+LFY +
Sbjct: 316 --KSHNHWLFFDDENVEMTDESMVQTFFGSAQEFSGNTDNGYILFYESL 362
>Os09g0407900 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 554
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Query: 727 ASKKLDLWRLPEILIIHLKRFSYSRYTKNKLETCVDFPVHDLDLSKYI----GSRGQQIS 782
A + + RLP+ LI+H++RF+ + + K T V+FPV +L+L YI +++
Sbjct: 433 ARMRYRVIRLPKYLILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPKPKDSEKLR 492
Query: 783 NHYRLYAISNHYGSMGGGHYTAYVYHEGKKGWYDFDDRHVGPISEESIKTSAAYVLFY 840
+ Y L A H G G G Y +V + ++ WY+ D HV + + S AY+ Y
Sbjct: 493 SKYDLIANVVHDGKPGEGCYRVFVQRKSEEAWYEMQDLHVTETLPQMVALSEAYMQIY 550
>Os05g0510300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 644
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 5/141 (3%)
Query: 701 LEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSYSRYTKNKLETC 760
L F + E L + + C CK+ A K+L + R P++L+I LKRF K+
Sbjct: 205 LARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKRF--EGINGGKINRN 262
Query: 761 VDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYG-SMGGGHYTAYVYHEGKKGWYDFDD 819
++F L LS ++ ++ Q Y L+ H G S GHY AYV + WY +D
Sbjct: 263 IEFK-ETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPDSGHYYAYV-KDAIGRWYCCND 320
Query: 820 RHVGPISEESIKTSAAYVLFY 840
H+ P S + + + Y+LFY
Sbjct: 321 SHISPSSSQDVLSEKVYILFY 341
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,743,239
Number of extensions: 1262252
Number of successful extensions: 3087
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 3083
Number of HSP's successfully gapped: 17
Length of query: 864
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 755
Effective length of database: 11,344,475
Effective search space: 8565078625
Effective search space used: 8565078625
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)