Os04g0452400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15) (Ubiquitin- specific processing protease 4) (AtUBP4).
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Os04g0452400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15) (Ubiquitin- specific processing protease 4) (AtUBP4).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.64 | 0.288 | 10.7 | -0.546 | 0.223 | 0.0974 | -0.311 | -1.42 | -0.227 | 14.6 | 22.37 | 1580 | -- | -- |
| 41.87 | 0.301 | 10.7 | -0.231 | 0.254 | 0.24 | -0.296 | -- | -0.176 | 14.7 | 21.38 | 10790 | -- | -- |
| 37.78 | 0.286 | 10.7 | -0.559 | 0.221 | 0.0912 | -- | -1.42 | -0.233 | 14.9 | 22.3 | 1749 | -- | -- |
| 41.76 | 0.301 | 10.7 | -0.286 | 0.229 | 0.315 | -- | -- | -0.17 | 15 | 19.42 | 11523 | -- | -- |
| 40.69 | 0.297 | 10.7 | -0.572 | -- | 0.0863 | -- | -1.44 | -0.235 | -- | 22.3 | 1749 | -- | -- |
| 42.81 | 0.307 | 10.7 | -0.0301 | 0.222 | -- | -0.288 | -- | -0.0763 | 14.7 | -- | -- | -- | -- |
| 43.08 | 0.307 | 10.7 | -0.0371 | 0.224 | -- | -- | -- | -0.0778 | 15.1 | -- | -- | -- | -- |
| 43.62 | 0.308 | 10.7 | -0.356 | -- | 0.413 | -- | -- | -0.169 | -- | 15.6 | 23263 | -- | -- |
| 42.48 | 0.305 | 10.7 | -- | 0.201 | 0.136 | -- | -- | -0.0901 | 15.3 | 19.42 | 11523 | -- | -- |
| 45.94 | 0.317 | 10.7 | -0.0466 | -- | -- | -- | -- | -0.0836 | -- | -- | -- | -- | -- |
| 43.11 | 0.307 | 10.7 | -- | 0.224 | -- | -- | -- | -0.0737 | 15.1 | -- | -- | -- | -- |
| 44.52 | 0.312 | 10.7 | -- | -- | 0.241 | -- | -- | -0.0972 | -- | 18.7 | 10381 | -- | -- |
| 46 | 0.317 | 10.7 | -- | -- | -- | -- | -- | -0.0785 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.85 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 1 | 1 |
| 11 | 35.85 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 1 | 1 |
| 25 | 36.63 | wind | 1.0 | 90 | < th | dose dependent | rect. | 24 | 1 |
| 30 | 37.37 | wind | 1.0 | 30 | < th | dose independent | rect. | 24 | 2 |
| 33 | 37.51 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 34 | 37.52 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 43 | 37.66 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 56 | 37.73 | wind | 1.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 57 | 37.74 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 71 | 37.81 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 84 | 37.84 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 87 | 37.85 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 88 | 37.85 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 94 | 37.86 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 18 | 9 |
| 101 | 37.87 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 131 | 37.90 | wind | 1.0 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 162 | 37.92 | radiation | 1.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 222 | 37.97 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 2 |
| 223 | 37.97 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 7 | 4 |
| 261 | 38.01 | temperature | 15.0 | 1440 | > th | dose dependent | sin | 13 | NA |
| 269 | 38.02 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 13 | NA |
| 284 | 38.03 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 286 | 38.03 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 2 |
| 328 | 38.07 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 401 | 38.13 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 434 | 38.16 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 473 | 38.19 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 474 | 38.19 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 6 |
| 482 | 38.20 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 6 |
| 483 | 38.20 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 18 | 13 |
| 485 | 38.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 519 | 38.22 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 522 | 38.22 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 2 | 4 |
| 524 | 38.22 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 2 | 4 |
| 536 | 38.23 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 557 | 38.24 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 583 | 38.25 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 664 | 38.28 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 775 | 38.33 | temperature | 20.0 | 1440 | > th | dose independent | sin | 10 | NA |
| 843 | 38.36 | radiation | 10.0 | 30 | > th | dose independent | rect. | 9 | 7 |
| 864 | 38.37 | temperature | 20.0 | 1440 | < th | dose independent | sin | 10 | NA |
| 958 | 38.41 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 4 |