Os06g0184300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein.
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Os06g0184300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.66 | 0.252 | 13.2 | 0.943 | 0.47 | -0.345 | 0.338 | -2.53 | 0.458 | 5.42 | 39.87 | 5344 | -- | -- |
| 34.01 | 0.272 | 13.3 | 0.394 | 0.48 | -0.203 | 0.407 | -- | 0.301 | 5.26 | 63.98 | 6306 | -- | -- |
| 28.93 | 0.251 | 13.2 | 0.951 | 0.469 | -0.349 | -- | -2.56 | 0.458 | 5.44 | 59.11 | 5429 | -- | -- |
| 34.42 | 0.273 | 13.3 | 0.392 | 0.482 | -0.206 | -- | -- | 0.3 | 5.33 | 79.52 | 6336 | -- | -- |
| 40.32 | 0.296 | 13.2 | 0.985 | -- | -0.399 | -- | -2.69 | 0.46 | -- | 84.75 | 5538 | -- | -- |
| 34.7 | 0.276 | 13.3 | 0.493 | 0.479 | -- | 0.415 | -- | 0.349 | 5.2 | -- | -- | -- | -- |
| 35.13 | 0.278 | 13.3 | 0.493 | 0.482 | -- | -- | -- | 0.347 | 5.27 | -- | -- | -- | -- |
| 45.2 | 0.314 | 13.3 | 0.579 | -- | 0.379 | -- | -- | 0.409 | -- | 107.8 | 32702 | -- | -- |
| 34.7 | 0.274 | 13.4 | -- | 0.478 | -0.421 | -- | -- | 0.166 | 5.34 | 111.5 | 47520 | -- | -- |
| 47.26 | 0.321 | 13.3 | 0.51 | -- | -- | -- | -- | 0.359 | -- | -- | -- | -- | -- |
| 41.55 | 0.302 | 13.3 | -- | 0.491 | -- | -- | -- | 0.292 | 5.23 | -- | -- | -- | -- |
| 46.62 | 0.318 | 13.4 | -- | -- | -0.44 | -- | -- | 0.17 | -- | 133 | 47520 | -- | -- |
| 54.13 | 0.343 | 13.3 | -- | -- | -- | -- | -- | 0.302 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.01 | radiation | 40 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 17 | 27.36 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 18 | 27.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 20 | 27.71 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 36 | 27.75 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 37 | 27.78 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 38 | 27.79 | temperature | 10 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 47 | 27.93 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 50 | 27.93 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 52 | 27.94 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 54 | 27.95 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 57 | 27.96 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 65 | 28.02 | wind | 3 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 66 | 28.02 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 75 | 28.06 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 81 | 28.07 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 5 |
| 86 | 28.08 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 87 | 28.08 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 89 | 28.09 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 6 |
| 95 | 28.10 | radiation | 1 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 96 | 28.10 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 111 | 28.14 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 122 | 28.17 | humidity | 90 | 4320 | < th | dose independent | rect. | 1 | 11 |
| 156 | 28.24 | wind | 9 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 157 | 28.24 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 158 | 28.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 185 | 28.27 | humidity | 60 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 188 | 28.27 | temperature | 30 | 4320 | < th | dose dependent | rect. | 16 | 7 |
| 194 | 28.29 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 281 | 28.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 12 | 5 |
| 288 | 28.44 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 13 |
| 313 | 28.48 | humidity | 90 | 4320 | < th | dose independent | sin | 5 | NA |
| 315 | 28.48 | temperature | 10 | 4320 | > th | dose dependent | sin | 16 | NA |
| 316 | 28.48 | humidity | 60 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 330 | 28.50 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 333 | 28.50 | temperature | 10 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 334 | 28.50 | temperature | 30 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 360 | 28.51 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 12 |
| 372 | 28.52 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 382 | 28.53 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 3 |
| 383 | 28.53 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 386 | 28.53 | wind | 7 | 4320 | < th | dose independent | rect. | 13 | 12 |
| 388 | 28.53 | temperature | 25 | 4320 | < th | dose dependent | sin | 17 | NA |
| 400 | 28.54 | wind | 5 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 421 | 28.56 | temperature | 25 | 720 | > th | dose independent | rect. | 18 | 1 |
| 431 | 28.57 | humidity | 90 | 4320 | > th | dose independent | rect. | 24 | 12 |
| 432 | 28.57 | humidity | 90 | 4320 | > th | dose independent | rect. | 24 | 17 |
| 452 | 28.59 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 16 |
| 484 | 28.61 | humidity | 70 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 486 | 28.61 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 16 |
| 500 | 28.62 | humidity | 90 | 4320 | > th | dose independent | rect. | 24 | 14 |
| 524 | 28.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 23 | 16 |
| 578 | 28.67 | humidity | 60 | 43200 | < th | dose dependent | rect. | 8 | 5 |
| 592 | 28.68 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 603 | 28.68 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 19 |
| 641 | 28.71 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 673 | 28.73 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 675 | 28.73 | humidity | 90 | 4320 | > th | dose independent | rect. | 5 | 4 |
| 683 | 28.73 | humidity | 60 | 43200 | < th | dose dependent | rect. | 3 | 10 |
| 714 | 28.75 | humidity | 90 | 4320 | > th | dose independent | sin | 4 | NA |
| 715 | 28.75 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 718 | 28.75 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 13 |
| 722 | 28.75 | temperature | 20 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 736 | 28.76 | temperature | 15 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 744 | 28.76 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 787 | 28.77 | temperature | 25 | 4320 | < th | dose dependent | rect. | 4 | 21 |
| 796 | 28.78 | temperature | 20 | 43200 | < th | dose dependent | sin | 22 | NA |
| 804 | 28.78 | temperature | 20 | 43200 | < th | dose dependent | rect. | 5 | 14 |
| 827 | 28.79 | temperature | 20 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 843 | 28.80 | temperature | 15 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 911 | 28.82 | wind | 7 | 4320 | > th | dose independent | rect. | 13 | 18 |
| 915 | 28.82 | atmosphere | 1015 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 939 | 28.83 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 980 | 28.84 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |