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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0407900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.46 (0.02) R2 : 0.449
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.572 (0.0481) R2dC : 0.173 R2C : 0.139
β3 : -0.994 (0.0625) R2dE : 0.309 R2E : 0.276
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0124 (0.0422) R2dN8 : 0.000135 R2N8 : 0.000223
σ : 0.375
deviance : 64.94
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_____
C
peak time of C : 10.8
E
wheather : temperature
threshold : 28.42
memory length : 4808
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.73 0.378 9.46 0.0271 0.573 -0.986 -0.0976 0.368 0.0271 10.8 28.74 4805 -- --
64.66 0.374 9.45 0.103 0.573 -0.967 -0.0942 -- 0.0268 10.8 28.5 4808 -- --
64.76 0.375 9.46 0.0259 0.575 -0.987 -- 0.357 0.0271 10.9 28.7 4811 -- --
64.7 0.375 9.45 0.0986 0.571 -0.971 -- -- 0.0246 10.9 28.49 4807 -- --
84.09 0.427 9.47 0.0329 -- -0.946 -- 0.399 0.0079 -- 28.4 4677 -- --
96.42 0.46 9.44 0.407 0.521 -- -0.164 -- 0.111 11.2 -- -- -- --
96.52 0.46 9.44 0.401 0.521 -- -- -- 0.111 11.3 -- -- -- --
84.16 0.427 9.47 0.0915 -- -0.914 -- -- 0.0246 -- 28.35 4677 -- --
64.94 0.375 9.46 -- 0.572 -0.994 -- -- 0.0124 10.8 28.42 4808 -- --
113.54 0.498 9.45 0.388 -- -- -- -- 0.106 -- -- -- -- --
100.75 0.47 9.45 -- 0.518 -- -- -- 0.0661 11.2 -- -- -- --
84.37 0.428 9.47 -- -- -0.935 -- -- 0.0133 -- 28.37 4677 -- --
117.5 0.506 9.46 -- -- -- -- -- 0.0628 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 66.78 temperature 30 4320 < th dose independent rect. 14 1
2 66.78 temperature 20 270 > th dose dependent rect. 1 19
4 67.01 temperature 30 4320 > th dose independent rect. 14 1
10 67.53 temperature 20 720 > th dose dependent sin 4 NA
12 67.58 temperature 20 720 > th dose dependent rect. 23 16
14 67.64 temperature 25 4320 > th dose dependent sin 5 NA
16 67.65 temperature 25 4320 > th dose dependent rect. 24 15
18 67.66 temperature 20 4320 > th dose dependent rect. 10 1
38 67.77 temperature 25 4320 > th dose dependent rect. 6 10
59 67.83 temperature 25 4320 > th dose dependent rect. 7 6
63 67.83 temperature 20 720 > th dose dependent rect. 1 14
67 67.83 temperature 25 4320 > th dose dependent rect. 24 20
80 67.86 temperature 25 4320 > th dose dependent rect. 19 21
105 67.91 temperature 25 4320 > th dose dependent rect. 6 14
127 67.94 temperature 25 4320 > th dose dependent rect. 7 1
141 67.96 temperature 25 720 > th dose dependent rect. 20 17
166 68.01 temperature 25 4320 > th dose dependent rect. 7 21
169 68.01 temperature 25 4320 > th dose dependent rect. 13 23
186 68.04 temperature 25 4320 > th dose dependent no NA NA
202 68.05 temperature 25 4320 > th dose dependent rect. 3 23
205 68.06 temperature 25 720 > th dose dependent sin 7 NA
240 68.10 temperature 25 4320 > th dose dependent rect. 10 23
553 68.71 temperature 25 4320 > th dose independent rect. 7 1
576 68.74 temperature 20 720 > th dose dependent rect. 3 10
612 68.81 temperature 25 4320 > th dose dependent rect. 15 1
635 68.84 temperature 20 4320 > th dose dependent rect. 18 1
648 68.86 temperature 25 270 > th dose dependent rect. 12 23
696 68.94 temperature 10 4320 > th dose dependent rect. 8 13
864 69.17 temperature 25 4320 < th dose independent rect. 6 2
897 69.21 temperature 30 4320 < th dose independent rect. 10 6
933 69.26 temperature 30 4320 < th dose independent rect. 21 19
934 69.26 temperature 10 4320 > th dose dependent rect. 18 1
948 69.27 temperature 30 4320 < th dose independent rect. 1 15
955 69.27 temperature 30 4320 < th dose dependent rect. 18 1
968 69.28 temperature 25 270 > th dose dependent rect. 6 15