BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0407900 Os09g0407900|AK070971
         (554 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0407900  Peptidase C19, ubiquitin carboxyl-terminal hyd...   999   0.0  
Os12g0621000  Similar to Ubiquitin-specific protease 8 (Frag...    68   2e-11

>Os09g0407900 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
           protein
          Length = 554

 Score =  999 bits (2582), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 490/554 (88%), Positives = 490/554 (88%)

Query: 1   MAADDLSSPARKRGRDXXXXXXXXVIDGEAAQKRARGEDPEGGALLGLANYXXXXXXXXX 60
           MAADDLSSPARKRGRD        VIDGEAAQKRARGEDPEGGALLGLANY         
Sbjct: 1   MAADDLSSPARKRGRDEEEEEEEEVIDGEAAQKRARGEDPEGGALLGLANYEEDEEDEEA 60

Query: 61  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPERRPRQVELRRDCPYLDTVNRQVLDF 120
                                            PERRPRQVELRRDCPYLDTVNRQVLDF
Sbjct: 61  AAAAGRRRANGRHEEEEEEDDDDDEVDNDVRRAPERRPRQVELRRDCPYLDTVNRQVLDF 120

Query: 121 DFEKFCSISLSNLNVYACLVCGKYYQGRGLKSHAYTHSLEAGHHVFINLQTEKAYCLPDG 180
           DFEKFCSISLSNLNVYACLVCGKYYQGRGLKSHAYTHSLEAGHHVFINLQTEKAYCLPDG
Sbjct: 121 DFEKFCSISLSNLNVYACLVCGKYYQGRGLKSHAYTHSLEAGHHVFINLQTEKAYCLPDG 180

Query: 181 YEINDPSLEDIRHVLNPRFTTEQVRNLDRNKQWSRALDGSNYLPGMVGLNNIKETDFVNV 240
           YEINDPSLEDIRHVLNPRFTTEQVRNLDRNKQWSRALDGSNYLPGMVGLNNIKETDFVNV
Sbjct: 181 YEINDPSLEDIRHVLNPRFTTEQVRNLDRNKQWSRALDGSNYLPGMVGLNNIKETDFVNV 240

Query: 241 TIQSLMRITPLRNFFLIPENYRHSKSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMK 300
           TIQSLMRITPLRNFFLIPENYRHSKSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMK
Sbjct: 241 TIQSLMRITPLRNFFLIPENYRHSKSPLVHRFGELTRKIWHARNFKGQVSPHEFLQAVMK 300

Query: 301 ASDKRFQIGVQSDPVEFMSWLLNTMHSKLKSRKRNRSIIHDCFQGELEVVKEFHKKHIVE 360
           ASDKRFQIGVQSDPVEFMSWLLNTMHSKLKSRKRNRSIIHDCFQGELEVVKEFHKKHIVE
Sbjct: 301 ASDKRFQIGVQSDPVEFMSWLLNTMHSKLKSRKRNRSIIHDCFQGELEVVKEFHKKHIVE 360

Query: 361 KKEDGDEQNGDAGSDIVTETSRVXXXXXXXXXXXXXXFKDAMEKNIIPQVPLFNILKKFD 420
           KKEDGDEQNGDAGSDIVTETSRV              FKDAMEKNIIPQVPLFNILKKFD
Sbjct: 361 KKEDGDEQNGDAGSDIVTETSRVPFLMLGLDLPPPPLFKDAMEKNIIPQVPLFNILKKFD 420

Query: 421 GETVTEVVRPSIARMRYRVIRLPKYLILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYI 480
           GETVTEVVRPSIARMRYRVIRLPKYLILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYI
Sbjct: 421 GETVTEVVRPSIARMRYRVIRLPKYLILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYI 480

Query: 481 PLPKPKDSEKLRSKYDLIANVVHDGKPGEGCYRVFVQRKSEEAWYEMQDLHVTETLPQMV 540
           PLPKPKDSEKLRSKYDLIANVVHDGKPGEGCYRVFVQRKSEEAWYEMQDLHVTETLPQMV
Sbjct: 481 PLPKPKDSEKLRSKYDLIANVVHDGKPGEGCYRVFVQRKSEEAWYEMQDLHVTETLPQMV 540

Query: 541 ALSEAYMQIYEQHE 554
           ALSEAYMQIYEQHE
Sbjct: 541 ALSEAYMQIYEQHE 554



>Os12g0621000 Similar to Ubiquitin-specific protease 8 (Fragment)
          Length = 864

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 4/118 (3%)

Query: 433 ARMRYRVIRLPKYLILHMRRFTKNNFFVEKNPTLVNFPVKNLELKDYIPLPKPKDSEKLR 492
           A  +  + RLP+ LI+H++RF+ + +   K  T V+FPV +L+L  YI        +++ 
Sbjct: 727 ASKKLDLWRLPEILIIHLKRFSYSRYTKNKLETCVDFPVHDLDLSKYI----GSRGQQIS 782

Query: 493 SKYDLIANVVHDGKPGEGCYRVFVQRKSEEAWYEMQDLHVTETLPQMVALSEAYMQIY 550
           + Y L A   H G  G G Y  +V  + ++ WY+  D HV     + +  S AY+  Y
Sbjct: 783 NHYRLYAISNHYGSMGGGHYTAYVYHEGKKGWYDFDDRHVGPISEESIKTSAAYVLFY 840



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,825,512
Number of extensions: 672914
Number of successful extensions: 1596
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1598
Number of HSP's successfully gapped: 4
Length of query: 554
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 448
Effective length of database: 11,501,117
Effective search space: 5152500416
Effective search space used: 5152500416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)