BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0573400 Os02g0573400|Os02g0573400
(415 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0573400 Peptidase C19, ubiquitin carboxyl-terminal hyd... 751 0.0
Os04g0452400 Similar to Ubiquitin carboxyl-terminal hydrola... 566 e-161
Os03g0190800 Similar to Ubiquitin carboxyl-terminal hydrola... 527 e-150
Os06g0184300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 146 3e-35
Os02g0795000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 139 3e-33
Os08g0478500 Peptidase C19, ubiquitin carboxyl-terminal hyd... 133 3e-31
Os05g0510300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 132 5e-31
Os06g0654000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 130 2e-30
Os09g0464400 Peptidase C19, ubiquitin carboxyl-terminal hyd... 124 9e-29
Os04g0647300 Similar to Ubiquitin-specific protease 22 124 1e-28
Os02g0244300 Peptidase C19, ubiquitin carboxyl-terminal hyd... 111 1e-24
Os12g0489100 Similar to Ubiquitin-specific protease 12 95 1e-19
Os07g0160000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 85 1e-16
Os11g0573000 Peptidase C19, ubiquitin carboxyl-terminal hyd... 83 5e-16
Os12g0621000 Similar to Ubiquitin-specific protease 8 (Frag... 82 5e-16
Os03g0192800 Similar to Ubiquitin-specific protease 26 80 2e-15
Os07g0661300 Similar to Ubiquitin-specific protease 24 77 3e-14
Os10g0160000 Similar to Ubiquitin carboxyl-terminal hydrola... 70 4e-12
AK110297 67 2e-11
>Os02g0573400 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 415
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 361/372 (97%), Positives = 361/372 (97%)
Query: 44 WDRLSVLGAGVSKLEKALGDHFPEGARYFGLENFGNTCYCNSVLQALYHCIPFREQLLEY 103
WDRLSVLGAGVSKLEKALGDHFPEGARYFGLENFGNTCYCNSVLQALYHCIPFREQLLEY
Sbjct: 44 WDRLSVLGAGVSKLEKALGDHFPEGARYFGLENFGNTCYCNSVLQALYHCIPFREQLLEY 103
Query: 104 YATYKNTEDSEDNLLTCLADLFSQITLAKKRTGVLAPKRFVQRVRKQNELFRSYMHQDAH 163
YATYKNTEDSEDNLLTCLADLFSQITLAKKRTGVLAPKRFVQRVRKQNELFRSYMHQDAH
Sbjct: 104 YATYKNTEDSEDNLLTCLADLFSQITLAKKRTGVLAPKRFVQRVRKQNELFRSYMHQDAH 163
Query: 164 EFWNFLVNDIIDILEEDCRTANSSPETTPEEVSXXXXXXXXXXXRERPLVTLVHRTFQGI 223
EFWNFLVNDIIDILEEDCRTANSSPETTPEEVS RERPLVTLVHRTFQGI
Sbjct: 164 EFWNFLVNDIIDILEEDCRTANSSPETTPEEVSNGAANALANGARERPLVTLVHRTFQGI 223
Query: 224 LTNETKCLMCDTITAKDETFFDLSIDVEQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSL 283
LTNETKCLMCDTITAKDETFFDLSIDVEQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSL
Sbjct: 224 LTNETKCLMCDTITAKDETFFDLSIDVEQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSL 283
Query: 284 QEAHKRMKIKKAPHVLVIHLKRFKYVEQLSRHKKLSYRVVYPLELKLGSMSEDADCEYSL 343
QEAHKRMKIKKAPHVLVIHLKRFKYVEQLSRHKKLSYRVVYPLELKLGSMSEDADCEYSL
Sbjct: 284 QEAHKRMKIKKAPHVLVIHLKRFKYVEQLSRHKKLSYRVVYPLELKLGSMSEDADCEYSL 343
Query: 344 FAVVVHVGSSPNHGHYVSQIKSHGNWLSFDDDTVQISEESTLQTFYGSSREHCGGNTDHG 403
FAVVVHVGSSPNHGHYVSQIKSHGNWLSFDDDTVQISEESTLQTFYGSSREHCGGNTDHG
Sbjct: 344 FAVVVHVGSSPNHGHYVSQIKSHGNWLSFDDDTVQISEESTLQTFYGSSREHCGGNTDHG 403
Query: 404 YILFYERLGGKS 415
YILFYERLGGKS
Sbjct: 404 YILFYERLGGKS 415
>Os04g0452400 Similar to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15)
(Ubiquitin- specific processing protease 4) (AtUBP4)
Length = 367
Score = 566 bits (1458), Expect = e-161, Method: Compositional matrix adjust.
Identities = 270/368 (73%), Positives = 313/368 (85%), Gaps = 3/368 (0%)
Query: 49 VLGAGVSKLEKALGDHFPEGARYFGLENFGNTCYCNSVLQALYHCIPFREQLLEYYATYK 108
V+GA SKLEKALGD FPEG RYFGLENFGNTCYCNSVLQALY CIPFRE+LLEYYA K
Sbjct: 2 VMGASGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCIPFREKLLEYYANNK 61
Query: 109 NTEDSEDNLLTCLADLFSQITLAKKRTGVLAPKRFVQRVRKQNELFRSYMHQDAHEFWNF 168
D+E+NLLTCLADLF Q++ +KK+TGV+APKRFVQRV+KQNELFRSYMHQDAHEF NF
Sbjct: 62 TPGDAEENLLTCLADLFMQVSQSKKKTGVIAPKRFVQRVKKQNELFRSYMHQDAHEFLNF 121
Query: 169 LVNDIIDILEEDCRTANSSPE-TTPEEVSXXXXXXXXXXXRERPLVTLVHRTFQGILTNE 227
L+N+++DILE++ A SP+ ++PE+V R+ P VTLVH+ FQGILTNE
Sbjct: 122 LLNELVDILEKESNAAKDSPQSSSPEKVPNGPVQPLANGVRKEPPVTLVHKNFQGILTNE 181
Query: 228 TKCLMCDTITAKDETFFDLSIDVEQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAH 287
T+CL C+T+TA+DETFFDLS+D+EQNSS+TSCLK+F STE LN EDKFFCDKC SLQEA
Sbjct: 182 TRCLRCETVTARDETFFDLSVDIEQNSSITSCLKNFCSTETLNAEDKFFCDKCCSLQEAQ 241
Query: 288 KRMKIKKAPHVLVIHLKRFKYVEQLSRHKKLSYRVVYPLELKLGSMSEDADCEYSLFAVV 347
KRMKIKKAPH+LVIHLKRFKY+EQL R+KKLSYRVV+P+ELKL S S+D D EYSLFAVV
Sbjct: 242 KRMKIKKAPHILVIHLKRFKYIEQLGRYKKLSYRVVFPMELKL-STSDDVDTEYSLFAVV 300
Query: 348 VHVGSSPNHGHYVSQIKSHGNWLSFDDDTVQISEESTLQTFYGSSREHCGGNTDHGYILF 407
VHVGS PNHGHYVS +KSH +WL FDD+ V++ EESTLQTF+GSS E+ GNTDHGYILF
Sbjct: 301 VHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMVEESTLQTFFGSSHEY-SGNTDHGYILF 359
Query: 408 YERLGGKS 415
YE LGGKS
Sbjct: 360 YEGLGGKS 367
>Os03g0190800 Similar to Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15)
(Ubiquitin- specific processing protease 3) (AtUBP3)
Length = 366
Score = 527 bits (1358), Expect = e-150, Method: Compositional matrix adjust.
Identities = 247/367 (67%), Positives = 306/367 (83%), Gaps = 2/367 (0%)
Query: 50 LGAGVSKLEKALGDHFPEGARYFGLENFGNTCYCNSVLQALYHCIPFREQLLEYYATYKN 109
+GA S+LEKALG+ FPEG RYFGLENFGNTCYCNSVLQALY C+PFREQLLEYYA K+
Sbjct: 1 MGAASSRLEKALGEQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYANNKS 60
Query: 110 TEDSEDNLLTCLADLFSQITLAKKRTGVLAPKRFVQRVRKQNELFRSYMHQDAHEFWNFL 169
T D EDN+LTCLADLFSQI+ KK+TGV+APKRF+QR++KQNE+FRSYMHQDAHEF NFL
Sbjct: 61 TGDVEDNMLTCLADLFSQISNQKKKTGVIAPKRFIQRLKKQNEIFRSYMHQDAHEFLNFL 120
Query: 170 VNDIIDILEEDCRT-ANSSPETTPEEVSXXXXXXXXXXXRERPLVTLVHRTFQGILTNET 228
+N+++DILE++ + A ++ ++ S ++ P+ TLVH+ FQGILTNET
Sbjct: 121 LNELVDILEKESKVVAEPCENSSLKKNSNGPINVQLNGTKKEPVPTLVHKCFQGILTNET 180
Query: 229 KCLMCDTITAKDETFFDLSIDVEQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHK 288
+CL C+T+T +DETFFDLS+D+EQNSS+TSCLK+F STE LN EDKFFCDKC SLQEA K
Sbjct: 181 RCLRCETVTDRDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQK 240
Query: 289 RMKIKKAPHVLVIHLKRFKYVEQLSRHKKLSYRVVYPLELKLGSMSEDADCEYSLFAVVV 348
RMKIKK P++LVIHLKRFKY+EQL R+KKLSYRVV+PLELKL + +++D EYSLFAV+V
Sbjct: 241 RMKIKKPPNILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLINTVDNSDLEYSLFAVLV 300
Query: 349 HVGSSPNHGHYVSQIKSHGNWLSFDDDTVQISEESTLQTFYGSSREHCGGNTDHGYILFY 408
HVGS PNHGHY+S +KSH +WL FDD+ V++++ES +QTF+GS++E GNTD+GYILFY
Sbjct: 301 HVGSGPNHGHYISLVKSHNHWLFFDDENVEMTDESMVQTFFGSAQEF-SGNTDNGYILFY 359
Query: 409 ERLGGKS 415
E L KS
Sbjct: 360 ESLAEKS 366
>Os06g0184300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 899
Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 168/346 (48%), Gaps = 51/346 (14%)
Query: 73 GLENFGNTCYCNSVLQALYHCIPFREQLLEYYATYKNTEDSEDNLLTCLADLFSQITLAK 132
GL+N GNTCY NSVLQ C+ + E Y + K+ L L + + A
Sbjct: 60 GLQNLGNTCYLNSVLQ----CLTYTEPFAAYLQSGKHKSSCRTAGFCALCALQNHVKTAL 115
Query: 133 KRTG-VLAPKRFVQRVRKQNELFRSYMHQDAHEFWNFLVNDIIDILEE--DCRTANSSPE 189
+ TG ++ P + V+ +R + FR+ +DAHE ++++LE C + P
Sbjct: 116 QSTGKIVTPSQIVKNLRCISRSFRNSRQEDAHEL-------MVNLLESMHKCCLPSGVPS 168
Query: 190 TTPEEVSXXXXXXXXXXXRERPLVTLVHRTFQGILTNETKCLMCDTITAKDETFFDLSID 249
+P +LVH+ F G L ++ KC C + K + F DLS+D
Sbjct: 169 ESPSAYEK----------------SLVHKIFGGRLRSQVKCTQCSHCSNKFDPFLDLSLD 212
Query: 250 VEQNSSLTSCLKSFFSTEILN-GEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKY 308
+ + +SL L++F + E+L+ GE ++ C +C A K+ I KAP+VL IHLKRF
Sbjct: 213 IGKATSLVRALQNFTAEELLDGGEKQYQCQRCRKKVVAKKKFTIDKAPYVLTIHLKRFSP 272
Query: 309 VEQLSR-HKKLSYRVVYPLELK-LGSMSEDADCEYSLFAVVVHVGSSPNHGHYVSQIK-S 365
+ KK+ ++ + L+LK S S+ AD +YSL+ V+VH G + GHY ++ S
Sbjct: 273 FNPREKIDKKVDFQPM--LDLKPFISDSKGADFKYSLYGVLVHAGWNTQSGHYYCFVRTS 330
Query: 366 HGNWLSFDDDTV-QISEESTLQTFYGSSREHCGGNTDHGYILFYER 410
G W + DD+ V Q+ E L+ Y+LFY R
Sbjct: 331 SGMWHNLDDNQVRQVREADVLR--------------QKAYMLFYVR 362
>Os02g0795000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 1185
Score = 139 bits (351), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 115/375 (30%), Positives = 172/375 (45%), Gaps = 61/375 (16%)
Query: 53 GVSKLEKALGDHFPE--GARYF------GLENFGNTCYCNSVLQALYHCIPFREQLLEYY 104
G+ K E + G PE AR + GL+NFGNTCY NSVLQ C+ + E + Y
Sbjct: 59 GLEKGEGSGGGIDPELRVARMYLRRIGAGLQNFGNTCYLNSVLQ----CLTYTEPFVAYL 114
Query: 105 ATYKNTEDSEDNLLTCLADLFSQITLAKKRTG-VLAPKRFVQRVRKQNELFRSYMHQDAH 163
+ ++ L L + A + TG +L P V+ +R + FR +DAH
Sbjct: 115 QSGEHMSSCRTIGFCALCALQRHVNSALQSTGKILRPVHIVRNLRCISRSFRISRQEDAH 174
Query: 164 EFWNFLVNDIIDILEE--DCRTANSSPETTPEEVSXXXXXXXXXXXRERPLVTLVHRTFQ 221
E ++ +LE C + P +P +LVHR F
Sbjct: 175 EL-------MVSLLESMHKCCLPSGVPSGSPSAYEK----------------SLVHRIFG 211
Query: 222 GILTNETKCLMCDTITAKDETFFDLSIDVEQNSSLTSCLKSFFSTEILN-GEDKFFCDKC 280
G+L ++ +C C + K + F DLS+++ ++L L+ F + E+L+ GE ++ C+ C
Sbjct: 212 GLLRSQVRCTTCSHCSNKFDPFLDLSLEIANAATLVKALQHFTAEELLDGGEKQYNCEHC 271
Query: 281 SSLQEAHKRMKIKKAPHVLVIHLKRFKYVEQLSRHKKLSYRVVYPLELKLG---SMSEDA 337
A KR I+KAP VL IHLKRF RH K+ +V + L L S E
Sbjct: 272 RQKVVAKKRFMIEKAPSVLTIHLKRFSPFN--PRH-KIDKKVQFQPTLNLKPYVSNPEGM 328
Query: 338 DCEYSLFAVVVHVGSSPNHGHYVSQIK-SHGNWLSFDDDTV-QISEESTLQTFYGSSREH 395
+ +YSL+ V+VH G + GHY ++ S G W + DD+ V Q+ E L+
Sbjct: 329 EFKYSLYGVLVHAGWNTQSGHYYCFVRTSSGIWHNLDDNKVYQVREADVLR--------- 379
Query: 396 CGGNTDHGYILFYER 410
Y+LFY R
Sbjct: 380 -----QKAYMLFYVR 389
>Os08g0478500 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 978
Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 153/317 (48%), Gaps = 40/317 (12%)
Query: 72 FGLENFGNTCYCNSVLQALYHCIPFREQLLEYYATYKNTEDSEDNLLTCLADLFSQITLA 131
FGL N GN+CY N+VLQ L P LL + KN E C F ++ +
Sbjct: 450 FGLHNLGNSCYANAVLQCLMFTRPLTSYLLGGLHS-KNCSKKE----WCFMCEFEKL-VG 503
Query: 132 KKRTG--VLAPKRFVQRVRKQNELFRSYMHQDAHEFWNFLVNDIIDILEEDCRTANSSPE 189
+ R G L+P + + F +DAHEF + ++ + + ++ R + +
Sbjct: 504 EGRQGKIALSPTGILSHLPDIGSSFGPGKQEDAHEFLRYAIDAMQSVCMKEARKSGT--- 560
Query: 190 TTPEEVSXXXXXXXXXXXRERPLVTLVHRTFQGILTNETKCLMCDTITAKDETFFDLSID 249
R TL+ F G L ++ +C CD + + E DL+++
Sbjct: 561 -----------------HRLHEETTLMQLIFGGYLRSKIRCTRCDATSEQHERILDLTVE 603
Query: 250 VEQN-SSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKY 308
++ + SSL L+ F STE+L+G++K+ C +C S + A K++ I +AP+VL I LKR+
Sbjct: 604 IDGDISSLEGALERFTSTEVLDGDNKYKCSRCKSHERAKKKLTISEAPNVLTIALKRY-- 661
Query: 309 VEQLSRHKKLSYRVVYPLELKL----GSMSEDADCEYSLFAVVVH--VGSSPNHGHYVSQ 362
Q + K++ + +P L L ++D YSL+AVVVH + ++ GHYV
Sbjct: 662 --QSGKFGKINKAIRFPETLNLQRYMSPKADDTSPVYSLYAVVVHHDIMNAAFSGHYVCY 719
Query: 363 IK-SHGNWLSFDDDTVQ 378
+K +HG W DD V+
Sbjct: 720 VKDTHGKWYKTDDSQVK 736
>Os05g0510300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 644
Score = 132 bits (332), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 97/344 (28%), Positives = 166/344 (48%), Gaps = 36/344 (10%)
Query: 74 LENFGNTCYCNSVLQALYHCIPFREQLLEYYAT---YKNTEDSEDNLLTCLADLFSQIT- 129
L+N GNTCY NSVLQ L P L + + K + + + C+ + QI+
Sbjct: 25 LKNLGNTCYLNSVLQCLASTPPLATFCLSFRHSNLCKKVLPNKDKECVFCVVE--RQISR 82
Query: 130 LAKKRTGVL-APKRFVQRVRKQNELFRSYMHQDAHEFWNFLVNDIIDI---LEEDCRTAN 185
L + G L +P + ++ + E FR +DAHEF ++++ + + +N
Sbjct: 83 LLRTEAGALDSPAKIIRCLPLFAEHFRWGRQEDAHEFLRYIIDACHTAGLRIRKRLPASN 142
Query: 186 SSPETTPEEVSXXXXXXXXXXXRERPLVTLVHRTFQGILTNETKCLMCDTITAKDETFFD 245
++ + EEV R + ++ TF G L ++ KCL C + K + D
Sbjct: 143 ANGDAGEEEV------------RVQGPYMVMKETFGGALLSQVKCLTCKGESNKTDEIMD 190
Query: 246 LSIDVEQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKR 305
+S+D+ ++S+ L FF EIL G +K+ C++C L A K++ + +AP VLVI LKR
Sbjct: 191 ISLDLPGSNSVADALARFFQPEILEGSNKYSCERCKKLTSARKQLFVLRAPKVLVIQLKR 250
Query: 306 FKYVEQLSRHKKLSYRVVYPLELKLGSMSEDADCEYSLFAVVVHVGSSPNHGHYVSQIK- 364
F+ + ++ + ++ L + + ++D+ Y+LF +VH G SP+ GHY + +K
Sbjct: 251 FEGINGGKINRNIEFKETLFLSDFMYNKNQDSLPVYNLFGSIVHSGFSPDSGHYYAYVKD 310
Query: 365 SHGNWLSFDDDTVQISEESTLQTFYGSSREHCGGNTDHGYILFY 408
+ G W +D IS S+ ++ YILFY
Sbjct: 311 AIGRWYCCNDS--HISPSSSQDVL-----------SEKVYILFY 341
>Os06g0654000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 944
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 100/344 (29%), Positives = 156/344 (45%), Gaps = 44/344 (12%)
Query: 73 GLENFGNTCYCNSVLQALYHCIPFREQLLEYYATYKNTEDSEDNLLTCLADLFSQITLAK 132
GL N GN+C+ N VLQ L P LL + + + ED C +L I A
Sbjct: 80 GLLNCGNSCFANVVLQCLSCTRPLAAYLLGMDHSRECYKRHEDWCFLC--ELQCHIQRAS 137
Query: 133 KRTGVLAPKRFVQRVRKQNELFRSYMHQDAHEFWNFLVNDIIDILEEDCRTANSSPETTP 192
+ APK + + +DAHEF F ++ + ++ + +T
Sbjct: 138 ESMHPFAPKNILSHLPNIGGNLGFGRQEDAHEFMRFAIDKMQSACLDEFGGEKAVDPSTQ 197
Query: 193 EEVSXXXXXXXXXXXRERPLVTLVHRTFQGILTNETKCLMCDTITAKDETFFDLSIDVEQ 252
E TL+ F G L ++ +C C ++ + E DL++++
Sbjct: 198 E-------------------TTLIQHIFGGRLQSQVQCTACGMVSNRYENMMDLTVEIHG 238
Query: 253 NS-SLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKYVEQ 311
++ SL CL F + E L+G++K+ CD CS +A KR+ + +AP++L I LKRF Q
Sbjct: 239 DADSLEECLDKFTAVEWLDGDNKYKCDGCSDYVKAQKRLTVYQAPNILTITLKRF----Q 294
Query: 312 LSRHKKLSYRVVYPLELKLGSM--SEDADCEYSLFAVVVHVG--SSPNHGHYVSQIKSH- 366
R KL+ RV +P++L L S D +Y L+AVVVH+ ++ GHY+ IK++
Sbjct: 295 SGRFGKLNKRVTFPMKLDLTPYMSSTDGSDQYDLYAVVVHLDMLNASFFGHYICYIKNYR 354
Query: 367 GNWLSFDDDTVQISEESTLQTFYGSSREHCGGNTDHGYILFYER 410
G W DD V +E + H G Y+L Y R
Sbjct: 355 GRWYKIDDCKVMAVDEEEV---------HAQG----AYMLLYSR 385
>Os09g0464400 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 918
Score = 124 bits (312), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 103/363 (28%), Positives = 163/363 (44%), Gaps = 55/363 (15%)
Query: 70 RYFGLENFGNTCYCNSVLQALYHCIPFREQLLEYYATYKNTEDSEDNLLT--------CL 121
R FGL N GN+CY N+VLQ L P L E + N +T C
Sbjct: 380 RPFGLVNLGNSCYANAVLQCLAFTRPLTAYLTEGLHSRNCNLILSQNCVTYHGSKKEWCF 439
Query: 122 ADLFSQITLAKKRTGV-LAPKRFVQRVRKQNELFRSYMHQDAHEFWNFLVNDIIDILEED 180
F ++ L +R L+P + +R F +DAHEF + ++ + ++
Sbjct: 440 MCEFEKLILEGRRGKSHLSPTGILSHLRDIGSSFGPGREEDAHEFLRYAIDTMQSASMKE 499
Query: 181 CRTANSSPETTPEEVSXXXXXXXXXXXRERPLVTLVHRTFQGILTNETKCLMCDTITAKD 240
+ + PEE TLV F G L ++ KC MC + +
Sbjct: 500 AK--KNGVYGLPEET------------------TLVQLIFGGYLRSKIKCTMCQGSSEQC 539
Query: 241 ETFFDLSIDVEQN-SSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVL 299
E DL+++++ + ++L L F STEIL+G++++ C +C S + A K++ I +AP++L
Sbjct: 540 ERILDLTVEIDGDINTLEEALHRFTSTEILDGDNRYNCSRCKSYERAKKKLTISEAPNIL 599
Query: 300 VIHLKRFKYVEQLSRHKKLSYRVVYPLELKLG---SMSEDADCEYSLFAVVVH--VGSSP 354
I LKR+ Q K++ V + L L S ++D Y L+AVVVH V ++
Sbjct: 600 TIALKRY----QSGNFGKINKAVRFTEYLNLSNYMSTADDISPVYQLYAVVVHHDVMNAA 655
Query: 355 NHGHYVSQIK-SHGNWLSFDDDTVQ-ISEESTLQTFYGSSREHCGGNTDHGYILFYERLG 412
GHYV +K + G W DD V+ +S E L + Y+LFY R
Sbjct: 656 FSGHYVCYVKDTQGKWHKMDDSQVKPVSLEKVL--------------SKCAYMLFYARCS 701
Query: 413 GKS 415
++
Sbjct: 702 PRA 704
>Os04g0647300 Similar to Ubiquitin-specific protease 22
Length = 591
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/402 (26%), Positives = 167/402 (41%), Gaps = 104/402 (25%)
Query: 73 GLENFGNTCYCNSVLQALYHCIPFREQLL----EYYATYKNT----EDSEDN----LLTC 120
GL N GNTC+ NSVLQAL H P R L Y + T +E N L C
Sbjct: 212 GLNNLGNTCFMNSVLQALLHAPPLRNYFLGDRHNRYLCPRQTPMRRRSAEANDKAACLAC 271
Query: 121 LADLFSQITLAKKRTGVLAPKRFVQRVRKQNELFRSYMHQDAHEFWNFLVNDIIDILEED 180
D + +RT +P +F+ + SY QDAHEF+ +++ I + +++D
Sbjct: 272 DLDEIYSAAFSGERTPY-SPAKFLYSWWQHASNLASYEQQDAHEFFISILDHIHENIKDD 330
Query: 181 CRTANSSPETTPEEVSXXXXXXXXXXXRERPLVTLVHRTFQGILTNETKCLMCDTITAKD 240
+ + + HR F GIL ++ C C +
Sbjct: 331 QHKSLAQGHGD---------------------CCIAHRVFSGILRSDVTCTHCGFTSTTF 369
Query: 241 ETFFDLSIDVEQN----------------------------SSLTSCLKSFFSTEILNGE 272
E D+S+D++ S+L CL+ F E L+ E
Sbjct: 370 EPCMDISLDLDAGYNNSLGVANPKVHVRNGERSSGGTNTKVSTLMRCLERFTRAERLDAE 429
Query: 273 DKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKY--VEQLSRHKKLSYRVVYPLELKL 330
KFFC++C QE+ K+M I++ P V H+KRF++ V+++SR K+ + + +P L +
Sbjct: 430 QKFFCERCKERQESLKQMSIRRLPLVSCFHIKRFEHSSVKKMSR--KVDHCLQFPFSLDM 487
Query: 331 G------------------SMSEDAD------CEYSLFAVVVHVGSSPNHGHYVSQIKSH 366
S + DAD E+ +FAV++H G GHYV+ ++ +
Sbjct: 488 APYLSSSILRSRFGNRIFPSEASDADSVSEFSSEFEIFAVIMHSGKL-EAGHYVTYLRLN 546
Query: 367 GNWLSFDDDTVQISEESTLQTFYGSSREHCGGNTDHGYILFY 408
+W DD V EE T++ T Y+LFY
Sbjct: 547 NHWYKCDDAWVTRVEEHTVR-------------TSQAYMLFY 575
>Os02g0244300 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 975
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/349 (26%), Positives = 157/349 (44%), Gaps = 55/349 (15%)
Query: 73 GLENFGNTCYCNSVLQALYHCIPFREQLLEYYATYKNTEDSEDNLLTCLADLFSQITLAK 132
GL N GN+CY N+VLQ C+ + L+ Y +++D + +L + +
Sbjct: 442 GLFNCGNSCYANAVLQ----CLMCTKPLMIYLLLRLHSKDCCSKNWCLMCELEQYASTLR 497
Query: 133 KRTGVLAPKRFVQRVRKQNELFRSYMHQDAHEFWNFLVNDI----IDILEEDCRTANSSP 188
+ G ++P R + +R +DAHEF LV + +D L + + S
Sbjct: 498 ESGGPVSPSRILSNLRNIGCRLGGGSQEDAHEFLRHLVMSMQGACLDGLGGEKQVEASLQ 557
Query: 189 ETTPEEVSXXXXXXXXXXXRERPLVTLVHRTFQGILTNETKCLMCDTITAKDETFFDLSI 248
ETT L+ + F G L ++ KCL C + + E DL++
Sbjct: 558 ETT-----------------------LIQQMFGGRLKSKVKCLRCYHESERYENIMDLTL 594
Query: 249 DVEQ-NSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFK 307
++ SL L F + E L+GE+ + C +CS+ +A K++ + + P++L + LKRF
Sbjct: 595 EIHGWVESLQDALTQFTAPEDLDGENMYKCGRCSAYVKARKQLSVHEVPNILTVVLKRF- 653
Query: 308 YVEQLSRHKKLSYRVVYPLELKLGSM---SEDADCEYSLFAVVVHVGS--SPNHGHYVSQ 362
Q ++ K++ V +P L + + D Y L+AVVVHV + + GHY+S
Sbjct: 654 ---QTGKYGKINKCVTFPDMLDMVPFVTGAGDNPPLYFLYAVVVHVDTENASFSGHYISY 710
Query: 363 IKS-HGNWLSFDDDTVQISEESTLQTFYGSSREHCGGNTDHGYILFYER 410
+K G WL DD VQ + + ++ Y+LFY R
Sbjct: 711 VKDMQGTWLRIDDSEVQAVSLNQVM-------------SEGAYMLFYMR 746
>Os12g0489100 Similar to Ubiquitin-specific protease 12
Length = 551
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/336 (26%), Positives = 147/336 (43%), Gaps = 51/336 (15%)
Query: 71 YFGLENFGNTCYCNSVLQALYHCIPFREQLLEYYATYKNTEDSEDNLLTCLADLFSQITL 130
Y GL+N G TCY NS+LQ LYH IP+ + + + T +N S ++ L LF ++
Sbjct: 206 YVGLKNQGATCYMNSLLQTLYH-IPYFRKAVYHMPTTENDMPS-GSIPLALQSLFYKLQY 263
Query: 131 AKKRTGVLAPKRFVQRVRKQNELFRSYMHQDAHEFWNFLVNDIIDILEEDCRTANSSPET 190
+ +A K + + + S+M D E L + D ++E
Sbjct: 264 SDNS---VATKELTKSFGW--DTYDSFMQHDVQELNRVLCEKLEDKMKETVVEGT----- 313
Query: 191 TPEEVSXXXXXXXXXXXRERPLVTLVHRTFQGILTNETKCLMCDTITAKDETFFDLSIDV 250
+ + F+G N +C+ D + + E+F+DL +DV
Sbjct: 314 -------------------------IEQLFEGHHINYIECINVDYKSNRKESFYDLQLDV 348
Query: 251 EQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKYVE 310
+ S + + + E L G++K+ ++ LQ+A K + P VL + LKRF+Y
Sbjct: 349 KGCSDVYASFDKYVEVERLEGDNKYHAEQY-GLQDAKKGVLFLDFPPVLQLQLKRFEYDY 407
Query: 311 QLSRHKKLSYRVVYPLELKLGS-----MSEDADCE----YSLFAVVVHVGSSPNHGHYVS 361
K++ R +PL+L L ++ DAD Y+L +V+VH G + GHY +
Sbjct: 408 MRDTMVKINDRYEFPLQLDLDRDDGKYLAPDADRSIRNLYTLHSVLVHSGGV-HGGHYYA 466
Query: 362 QIKS--HGNWLSFDDDTVQISE-ESTLQTFYGSSRE 394
I+ W FDD+ V + + L+ YG E
Sbjct: 467 FIRPTLSDQWYKFDDERVTKEDTKKALEEQYGGEEE 502
>Os07g0160000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 911
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 81/144 (56%), Gaps = 10/144 (6%)
Query: 251 EQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKYVE 310
E + +L CL++F E L ED ++C C Q+A K++ + + P VLVIHLKRF Y
Sbjct: 734 EDSVALHGCLEAFLKEEPLGPEDMWYCPCCKKHQQAMKKLDLWRLPEVLVIHLKRFSYT- 792
Query: 311 QLSRHKKLSYRVVYPL-ELKLGSM----SEDADCEYSLFAVVVHVGSSPNHGHYVSQI-- 363
Q +R+ KL V +P+ +L L S SE +DC Y L+A+ H G+ GHY + I
Sbjct: 793 QFTRN-KLETFVDFPISDLDLSSYIIDKSELSDCHYRLYAISNHYGNM-GGGHYTASIYH 850
Query: 364 KSHGNWLSFDDDTVQISEESTLQT 387
+ W FDD+ V+ E +++T
Sbjct: 851 EEGKGWYKFDDECVRPITEDSIKT 874
>Os11g0573000 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 family
protein
Length = 290
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 134/303 (44%), Gaps = 48/303 (15%)
Query: 71 YFGLENFGNTCYCNSVLQALYHCIPFREQLLEYYATYKNTEDSEDNLLTCLADLFSQITL 130
Y GL+N G TCY NS+LQ LYH IP+ + + + T +N S ++ L LF ++
Sbjct: 21 YVGLKNQGATCYMNSLLQTLYH-IPYFRKAVYHMPTTENDMPS-GSIPLALQSLFYKLQY 78
Query: 131 AKKRTGVLAPKRFVQRVRKQNELFRSYMHQDAHEFWNFLVNDIIDILEEDCRTANSSPET 190
+ +A K + + + S+M D E L + D + + E
Sbjct: 79 SDNS---VATKELTKSFGW--DTYDSFMQHDVQELNRVLCEKLED------KMKRTVVEG 127
Query: 191 TPEEVSXXXXXXXXXXXRERPLVTLVHRTFQGILTNETKCLMCDTITAKDETFFDLSIDV 250
T E++ F+G N +C+ D + + E+F+DL +DV
Sbjct: 128 TIEKL------------------------FEGHHINYIECINVDYKSNRKESFYDLQLDV 163
Query: 251 EQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKYVE 310
+ + + + E L G++K+ + LQ+A K + P VL + LKRF+Y
Sbjct: 164 KGCRDVYASFDKYVEVERLEGDNKYHAEN-HGLQDAKKGVLFLDFPPVLQLQLKRFEYDY 222
Query: 311 QLSRHKKLSYRVVYPLELKLGS-----MSEDADCE----YSLFAVVVHVGSSPNHGHYVS 361
K++ R +PL+L L ++ DAD Y+L +V+VH G + GHY +
Sbjct: 223 MRDTMVKINDRYEFPLQLDLDRDDGKYLAPDADRSIRNLYALHSVLVHSGGV-HGGHYYA 281
Query: 362 QIK 364
I+
Sbjct: 282 FIR 284
>Os12g0621000 Similar to Ubiquitin-specific protease 8 (Fragment)
Length = 864
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 83/173 (47%), Gaps = 29/173 (16%)
Query: 251 EQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKYVE 310
++ SL +CL++F E L ED ++C C ++A K++ + + P +L+IHLKRF Y
Sbjct: 692 QETCSLYACLEAFIKEEPLGPEDMWYCPGCKEHRQASKKLDLWRLPEILIIHLKRFSY-- 749
Query: 311 QLSRH--KKLSYRVVYP-----LELKLGSMSEDADCEYSLFAVVVHVGSSPNHGHYVSQI 363
SR+ KL V +P L +GS + Y L+A+ H GS GHY + +
Sbjct: 750 --SRYTKNKLETCVDFPVHDLDLSKYIGSRGQQISNHYRLYAISNHYGSM-GGGHYTAYV 806
Query: 364 KSHG--NWLSFDDDTV-QISEESTLQTFYGSSREHCGGNTDHGYILFYERLGG 413
G W FDD V ISEES T Y+LFY R+ G
Sbjct: 807 YHEGKKGWYDFDDRHVGPISEESI--------------KTSAAYVLFYRRIQG 845
>Os03g0192800 Similar to Ubiquitin-specific protease 26
Length = 311
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 110/243 (45%), Gaps = 41/243 (16%)
Query: 73 GLENFGNTCYCNSVLQALYHCIPFREQLLEYYATYKNTEDSEDNLLTCLADLFSQITLAK 132
GL N G TCY NS+LQ LY FR + D L A LF+Q+ +K
Sbjct: 107 GLTNLGATCYANSILQCLYMNTSFRLGIFSLEPDILKMHPVLDQL----ARLFAQLHSSK 162
Query: 133 KRTGVLAPKRFVQRVRKQNELFRSYMHQDAHEFWNFLVNDIIDILEEDCRTANSSPETTP 192
AP F++ + N + QD+HEF ++ L E + + P
Sbjct: 163 MAFIDSAP--FIKTLELDNGV-----QQDSHEFLTLFLS-----LLEGSLSHSKVPGAR- 209
Query: 193 EEVSXXXXXXXXXXXRERPLVTLVHRTFQGILTNETKCLMC---DTITAKDETFFDLSID 249
T+V F+G +++ T+C C ++K E F++L ++
Sbjct: 210 ---------------------TIVQHLFRGSVSHVTRCSSCGRDSEASSKMEDFYELELN 248
Query: 250 VEQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKYV 309
++ ++L L + STE L+GE+++FC+ C +A + +K++ P V+ LKR+ ++
Sbjct: 249 IKGLNNLEQSLDDYLSTEALDGENQYFCESCQKRVDATRCIKLRSLPPVVNFQLKRYVFL 308
Query: 310 EQL 312
++
Sbjct: 309 PKV 311
>Os07g0661300 Similar to Ubiquitin-specific protease 24
Length = 489
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 148/378 (39%), Gaps = 64/378 (16%)
Query: 73 GLENFGNTCYCNSVLQALYHCIPFREQLLEYYATYKNTEDSEDNLLTCLADLFSQITLAK 132
GL+N GN C+ NS LQAL C PF QLL+ +N + L + SQ +
Sbjct: 137 GLKNTGNICFLNSSLQALLSCWPFV-QLLQNLRN-QNIPKAGYPTLNAFIEFISQFDVLD 194
Query: 133 KRTGVLAPKRFVQRVRKQ------NELFRSYM------------HQDAHEFWNFLVNDII 174
+ V ++F K + + R++ +DA EF +F ++ +
Sbjct: 195 D-SNVKKDEKFATIASKSVIPSMFDTVLRNFTPDVPAGTASRPRQEDAQEFLSFAMDRMH 253
Query: 175 DIL---------EEDCRTANSSPETTPEEVSXXXXXXXXXXXRERPLVTLVHRTFQGILT 225
D L ++ +S+ + E V P + + F G L
Sbjct: 254 DELVKLNGNGSNSKEGMIVSSNDDDAWETVGKKNKSAIMRSQSFVP--SELTAIFGGQLQ 311
Query: 226 NETKCLMCD-TITAKDETFFDLSIDVEQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQ 284
+ K ++T + L I + L L+ F + E L G + L
Sbjct: 312 SCVKATGNKASVTVQPFRLIHLDIFPDAVQKLDDALRLFAAPESLEGYRT--AAGKAGLV 369
Query: 285 EAHKRMKIKKAPHVLVIHLKRFKYVEQLSRH--KKLSYRVVYPLELKLG-------SMSE 335
A K +KI ++++HLKRF Y H KL + +PLEL L S
Sbjct: 370 TARKSVKIHSLSKIMILHLKRFSY----GSHGCTKLFKPIHFPLELVLSRDLLSSPSSEH 425
Query: 336 DADCEYSLFAVVVHVGSSPNHGHYVSQIKS-HGNWLSFDDDTV-QISEESTLQTFYGSSR 393
Y L A + H+G++P+ GHY + KS G WL FDDD V +S L
Sbjct: 426 MQSRRYELVATITHLGANPSRGHYTADAKSASGQWLRFDDDNVTPVSLNKVLH------- 478
Query: 394 EHCGGNTDHGYILFYERL 411
D Y+LFY++L
Sbjct: 479 -------DQAYVLFYKQL 489
>Os10g0160000 Similar to Ubiquitin carboxyl-terminal hydrolase 12 (EC 3.1.2.15)
(Ubiquitin thiolesterase 12) (Ubiquitin-specific
processing protease 12) (Deubiquitinating enzyme 12)
Length = 931
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 21/171 (12%)
Query: 251 EQNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKYVE 310
++ +L SCL +F E L +D ++C +C+ ++A K++ + + P +LV+HLKRF Y
Sbjct: 757 QEAVNLFSCLDAFLKDEPLGPDDMWYCPRCTEHKQASKKLDLWRLPEILVVHLKRFSYSR 816
Query: 311 QLSRHKKLSYRVVYPL-ELKLGSMSE----DADCEYSLFAVVVH-VGSSPNHGHYVSQIK 364
+ KL V +P+ +L + + D Y L+AV+ H G H +++
Sbjct: 817 FMK--NKLDTFVNFPIHDLDMSRYANHSRGDQPPIYELYAVINHYGGMGGGHYSAYAKLV 874
Query: 365 SHGNWLSFDDDTVQISEESTLQTFYGSSREHCGGNTDHGYILFYERLGGKS 415
+W FDD V E ++ T Y+LFY R+G S
Sbjct: 875 EEDSWYHFDDSHVSSVGEEDIR-------------TSSAYLLFYRRVGSSS 912
>AK110297
Length = 797
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 84/189 (44%), Gaps = 36/189 (19%)
Query: 252 QNSSLTSCLKSFFSTEILNGEDKFFCDKCSSLQEAHKRMKIKKAPHVLVIHLKRFKYVEQ 311
+N+ + S F E++ G ++ C KC+ L++ + I + P L++ LKRF Y +
Sbjct: 415 ENNHIESLFSQAFCPELMAGSNRVSCSKCNDLRDTERYTCISRPPPHLILTLKRFAYDYR 474
Query: 312 LSRHKKLSYRVVYPLELKLGS-----------MSEDADCE----YSLFAVVVHVGSSPNH 356
R KL ++V + L L + ED + Y L+AVVVH G+ +
Sbjct: 475 SGRTDKLLHKVEFGPTLSLPACPPELVSSVFETPEDHQLQLQNKYGLYAVVVHAGTKLDG 534
Query: 357 GHYVSQIK-------------SHGNWLSFDDDTVQISEESTLQTFYGSSREHCGGNTDHG 403
GHY + + + W +DD +V +++ + S +E + D+
Sbjct: 535 GHYYTYARDPNSLHLSEEDDPDNAPWCRYDDQSVTVTD-------WKSWKEQLWSSIDNS 587
Query: 404 -YILFYERL 411
Y+LFY R
Sbjct: 588 EYLLFYRRF 596
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,302,601
Number of extensions: 481557
Number of successful extensions: 1041
Number of sequences better than 1.0e-10: 20
Number of HSP's gapped: 1009
Number of HSP's successfully gapped: 20
Length of query: 415
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 312
Effective length of database: 11,657,759
Effective search space: 3637220808
Effective search space used: 3637220808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)