BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os12g0586300 Os12g0586300|Os12g0586300
(395 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os12g0586300 Similar to Transfactor-like protein 363 e-100
Os01g0176700 Homeodomain-like containing protein 112 5e-25
Os03g0764600 Homeodomain-like containing protein 112 6e-25
Os07g0119300 Twin-arginine translocation pathway signal dom... 111 8e-25
Os02g0325600 Similar to Phosphate starvation response regul... 109 4e-24
Os02g0139000 Similar to Phosphate starvation regulator prot... 73 3e-13
Os03g0325500 Similar to Phosphate starvation regulator prot... 72 8e-13
Os03g0329900 Similar to Phosphate starvation regulator prot... 71 1e-12
Os06g0703900 Homeodomain-like containing protein 69 5e-12
Os04g0600000 Similar to Transfactor-like protein 69 8e-12
Os02g0700300 Similar to Phosphate starvation response regul... 68 1e-11
Os05g0488600 Similar to Phosphate starvation regulator prot... 67 2e-11
Os01g0844900 Homeodomain-like containing protein 67 2e-11
Os07g0685300 Similar to Phosphate starvation regulator prot... 67 2e-11
Os07g0438800 Similar to Phosphate starvation regulator prot... 67 3e-11
Os09g0299200 Homeodomain-like containing protein 65 6e-11
>Os12g0586300 Similar to Transfactor-like protein
Length = 395
Score = 363 bits (932), Expect = e-100, Method: Compositional matrix adjust.
Identities = 202/376 (53%), Positives = 202/376 (53%)
Query: 20 FVLGGVDMRMXXXXXXXXXXXXXXXXXXXXXXXXXXRFEDCIRSLEAEKAKMEVFRRELP 79
FVLGGVDMRM RFEDCIRSLEAEKAKMEVFRRELP
Sbjct: 20 FVLGGVDMRMLAARTATGALARAGGGEAAAAAAAAARFEDCIRSLEAEKAKMEVFRRELP 79
Query: 80 ISVHLIADVIEWLKDEVEKQRLLRRRQVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 139
ISVHLIADVIEWLKDEVEKQRLLRRRQVE
Sbjct: 80 ISVHLIADVIEWLKDEVEKQRLLRRRQVEAPAAAPPPEMFAPPATAKRKSAASAAAEGVK 139
Query: 140 XXXXXNDKRSWMSSAQLWXXXXXXXXXXXXXXXVKKQQHKVSNAFMPLATLPAFAKSLEK 199
NDKRSWMSSAQLW VKKQQHKVSNAFMPLATLPAFAKSLEK
Sbjct: 140 AEADANDKRSWMSSAQLWSCGSHTSTSTSNGGSVKKQQHKVSNAFMPLATLPAFAKSLEK 199
Query: 200 ADAAVPDLSLSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCWSPELHRR 259
ADAAVPDLSLSSR CWSPELHRR
Sbjct: 200 ADAAVPDLSLSSRVAMADAPACPAAPSATSSAVTDVAVAQRQQAVQRKARRCWSPELHRR 259
Query: 260 FVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRASXXXXXXXXHQTV 319
FVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRAS HQTV
Sbjct: 260 FVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRASDGGDGGGDHQTV 319
Query: 320 GGRLWPLPPEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 379
GGRLWPLPPE
Sbjct: 320 GGRLWPLPPEQYTTSQHSTSQSGSPQGPLQLTVSSSHAVSVTAGDSCDGGEEEEEDGKSG 379
Query: 380 XYSWEMQNGARASSSS 395
YSWEMQNGARASSSS
Sbjct: 380 SYSWEMQNGARASSSS 395
>Os01g0176700 Homeodomain-like containing protein
Length = 425
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 60/82 (73%), Gaps = 4/82 (4%)
Query: 251 CWSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRR---AS 307
CWSPELHRRFV ALQ LGG Q ATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRR +
Sbjct: 188 CWSPELHRRFVNALQILGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPMPSP 247
Query: 308 XXXXXXXXHQTVGGRLWPLPPE 329
V G +W +PPE
Sbjct: 248 APPTAATPQLVVLGGIW-VPPE 268
>Os03g0764600 Homeodomain-like containing protein
Length = 348
Score = 112 bits (279), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 49/56 (87%), Positives = 54/56 (96%)
Query: 251 CWSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRA 306
CWSPELHR+FVAALQ+LGGPQ ATPKQIRE+MKVDGLTNDEVKSHLQKYRLH R++
Sbjct: 228 CWSPELHRQFVAALQQLGGPQVATPKQIREVMKVDGLTNDEVKSHLQKYRLHNRKS 283
>Os07g0119300 Twin-arginine translocation pathway signal domain containing
protein
Length = 355
Score = 111 bits (278), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 49/54 (90%), Positives = 52/54 (96%)
Query: 251 CWSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLHTR 304
CWSP+LHR+FVAALQ+LGGPQ ATPKQIRELMKVDGLTNDEVKSHLQKYRLH R
Sbjct: 232 CWSPDLHRKFVAALQQLGGPQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHNR 285
>Os02g0325600 Similar to Phosphate starvation response regulator-like protein
Length = 412
Score = 109 bits (272), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 59/88 (67%), Gaps = 9/88 (10%)
Query: 251 CWSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRASXXX 310
CW+PELHRRF+ ALQ+LGG ATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRR S
Sbjct: 239 CWAPELHRRFLQALQQLGGSHVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPSSTG 298
Query: 311 XXXXXHQ---------TVGGRLWPLPPE 329
V G +W PPE
Sbjct: 299 QSSAAAGVPAPPAPQFVVVGSIWVPPPE 326
>Os02g0139000 Similar to Phosphate starvation regulator protein (Regulatory
protein of P- starvation acclimation response Psr1)
Length = 467
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 40/50 (80%)
Query: 252 WSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRL 301
W+PELH RFV A+ +L GP+ ATPK + +LMKV+GLT +KSHLQKYRL
Sbjct: 270 WTPELHERFVDAVNKLEGPEKATPKGVLKLMKVEGLTIYHIKSHLQKYRL 319
>Os03g0325500 Similar to Phosphate starvation regulator protein (Regulatory
protein of P- starvation acclimation response Psr1)
Length = 354
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/50 (66%), Positives = 38/50 (76%)
Query: 252 WSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRL 301
W+PELH RFV A+ +LGGP+ ATPK I LM V GLT +KSHLQKYRL
Sbjct: 52 WTPELHERFVEAVNQLGGPEKATPKTIMRLMGVPGLTLYHLKSHLQKYRL 101
>Os03g0329900 Similar to Phosphate starvation regulator protein (Regulatory
protein of P- starvation acclimation response Psr1)
Length = 428
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/49 (65%), Positives = 38/49 (77%)
Query: 252 WSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYR 300
W+PELH FV A+ +LGG + ATPK + +LMKVDGLT VKSHLQKYR
Sbjct: 221 WTPELHESFVHAVNKLGGSEKATPKGVLKLMKVDGLTIYHVKSHLQKYR 269
>Os06g0703900 Homeodomain-like containing protein
Length = 479
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 39/50 (78%)
Query: 252 WSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRL 301
W+ ELH RFV A+ +L GP+ ATPK + +LMKV+GLT VKSHLQKYRL
Sbjct: 274 WTLELHERFVEAVNKLDGPEKATPKGVLKLMKVEGLTIYHVKSHLQKYRL 323
>Os04g0600000 Similar to Transfactor-like protein
Length = 98
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 37/50 (74%)
Query: 252 WSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRL 301
W+P+LH RFV A+ RLGGP ATPK + LM + GLT +KSHLQKYRL
Sbjct: 26 WTPDLHERFVDAVTRLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 75
>Os02g0700300 Similar to Phosphate starvation response regulator-like protein
Length = 288
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 37/50 (74%)
Query: 252 WSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRL 301
W+P+LH RFV A+ +LGGP ATPK + LM + GLT +KSHLQKYRL
Sbjct: 36 WTPDLHERFVEAVTKLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 85
>Os05g0488600 Similar to Phosphate starvation regulator protein (Regulatory
protein of P- starvation acclimation response Psr1)
Length = 392
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 38/50 (76%)
Query: 252 WSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRL 301
W+PELH+RFV A+ +LGG + ATPK + LM + GLT +KSHLQKYRL
Sbjct: 30 WTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRL 79
>Os01g0844900 Homeodomain-like containing protein
Length = 219
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 252 WSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRR 305
W+PELH RFV A+ LG + A PK I LM VDGLT + V SHLQKYRL+ +R
Sbjct: 111 WTPELHHRFVEAVAHLGE-KGAVPKAIVRLMNVDGLTRENVASHLQKYRLYLKR 163
>Os07g0685300 Similar to Phosphate starvation regulator protein (Regulatory
protein of P- starvation acclimation response Psr1)
Length = 345
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%)
Query: 252 WSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRL 301
W+ ELH RFV A+ +LGGP ATPK I LM + GLT +KSHLQKYRL
Sbjct: 57 WTSELHERFVEAVNQLGGPDKATPKTIMRLMGIPGLTLYHLKSHLQKYRL 106
>Os07g0438800 Similar to Phosphate starvation regulator protein (Regulatory
protein of P- starvation acclimation response Psr1)
Length = 426
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 36/49 (73%)
Query: 252 WSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYR 300
W+PELH RFV A+ LGG + ATPK + +LMK D LT VKSHLQKYR
Sbjct: 251 WTPELHERFVDAVNLLGGSEKATPKGVLKLMKADNLTIYHVKSHLQKYR 299
>Os09g0299200 Homeodomain-like containing protein
Length = 288
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 36/50 (72%)
Query: 252 WSPELHRRFVAALQRLGGPQAATPKQIRELMKVDGLTNDEVKSHLQKYRL 301
W+ ELH RFV A+ +LGGP ATPK + +M V GLT VKSHLQKYRL
Sbjct: 28 WTNELHERFVEAVTQLGGPDRATPKGVLRIMGVQGLTIYHVKSHLQKYRL 77
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.131 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,647,259
Number of extensions: 153700
Number of successful extensions: 451
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 454
Number of HSP's successfully gapped: 16
Length of query: 395
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 292
Effective length of database: 11,657,759
Effective search space: 3404065628
Effective search space used: 3404065628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)