FiT-DB / Search/ Help/ Sample detail

Os02g0139000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phosphate starvation regulator protein (Regulatory protein of P- starvation acclimation response Psr1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.028) R2 : 0.828
β1 : -0.261 (0.131) R2dD : 0.00276 R2D : -0.0272
β2 : 2.87 (0.0679) R2dC : 0.715 R2C : 0.728
β3 : 0.574 (0.112) R2dE : 0.0125 R2E : 0.0525
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -5.67 (0.504) R2dD*E : 0.0972 R2D*E : 0.0527
γ1 : 0.103 (0.0624) R2dN8 : 0.00185 R2N8 : -0.0065
σ : 0.479
deviance : 105.67
__
_____
C
peak time of C : 19.8
E
wheather : temperature
threshold : 18
memory length : 180
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
104.55 0.48 11 -0.254 2.86 0.628 -0.813 -5.64 0.0989 19.8 18.01 106 -- --
135.07 0.541 10.9 0.701 2.83 0.466 -0.928 -- 0.365 19.7 15 110 -- --
105.67 0.479 11 -0.261 2.87 0.574 -- -5.67 0.103 19.8 18 180 -- --
136.83 0.545 10.9 0.718 2.85 0.469 -- -- 0.371 19.8 14.7 97 -- --
449.55 0.988 11 -0.766 -- 2.95 -- -5.39 -0.26 -- 12.68 520 -- --
136.98 0.549 10.8 0.798 2.91 -- -0.886 -- 0.438 19.6 -- -- -- --
139.09 0.552 10.8 0.818 2.9 -- -- -- 0.436 19.6 -- -- -- --
469.23 1.01 10.9 0.154 -- 2.54 -- -- -0.0159 -- 16.81 552 -- --
149.19 0.569 10.9 -- 2.83 0.791 -- -- 0.268 19.9 14.19 97 -- --
591.98 1.14 10.8 0.777 -- -- -- -- 0.392 -- -- -- -- --
156.74 0.586 10.9 -- 2.9 -- -- -- 0.345 19.6 -- -- -- --
469.78 1.01 10.9 -- -- 2.63 -- -- -0.0396 -- 16.49 552 -- --
607.92 1.15 10.8 -- -- -- -- -- 0.306 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 97.84 temperature 10.0 270 > th dose dependent rect. 6 19
2 98.75 temperature 10.0 270 > th dose dependent rect. 5 21
3 98.83 temperature 30.0 270 < th dose dependent sin 7 NA
8 100.24 wind 1.0 43200 > th dose independent rect. 15 11
11 100.38 temperature 30.0 270 < th dose dependent rect. 23 11
12 100.40 radiation 20.0 4320 < th dose independent rect. 22 10
13 100.41 radiation 20.0 4320 < th dose independent rect. 24 8
17 100.45 radiation 20.0 4320 < th dose independent rect. 5 3
18 100.45 radiation 20.0 4320 < th dose independent rect. 3 5
27 100.52 wind 7.0 43200 < th dose independent rect. 5 9
29 100.61 wind 7.0 43200 > th dose independent rect. 4 10
31 100.64 wind 7.0 43200 < th dose independent rect. 7 7
32 100.64 wind 5.0 43200 > th dose dependent rect. 9 5
36 100.75 wind 7.0 43200 > th dose independent rect. 7 7
41 100.86 temperature 10.0 270 > th dose dependent sin 6 NA
42 100.93 wind 7.0 43200 < th dose independent rect. 1 14
47 100.98 wind 1.0 43200 < th dose independent rect. 15 11
48 100.98 wind 7.0 43200 > th dose independent rect. 1 13
51 101.01 wind 7.0 43200 > th dose independent rect. 24 15
52 101.03 wind 7.0 43200 < th dose independent rect. 21 18
56 101.05 wind 1.0 43200 < th dose dependent rect. 10 15
58 101.06 wind 7.0 43200 > th dose independent rect. 21 18
94 101.29 temperature 20.0 270 > th dose dependent rect. 21 15
95 101.32 wind 1.0 43200 > th dose independent rect. 11 14
112 101.54 temperature 10.0 270 > th dose dependent rect. 6 8
114 101.55 wind 5.0 43200 > th dose dependent rect. 4 11
116 101.56 wind 7.0 43200 < th dose independent sin 4 NA
117 101.58 humidity 70.0 43200 > th dose independent rect. 11 1
119 101.58 radiation 10.0 4320 > th dose dependent rect. 6 2
121 101.60 wind 7.0 43200 > th dose independent sin 5 NA
146 101.69 wind 1.0 43200 < th dose independent rect. 11 14
160 101.80 wind 1.0 43200 < th dose dependent sin 18 NA
163 101.82 humidity 80.0 43200 < th dose independent rect. 8 1
176 101.92 wind 5.0 43200 > th dose dependent rect. 21 18
246 102.33 radiation 30.0 43200 < th dose independent rect. 5 2
254 102.39 wind 5.0 43200 > th dose dependent sin 4 NA
267 102.47 radiation 40.0 4320 < th dose dependent rect. 6 2
286 102.54 radiation 40.0 43200 < th dose independent rect. 16 8
289 102.55 radiation 40.0 4320 < th dose dependent rect. 1 7
294 102.56 radiation 40.0 4320 < th dose dependent rect. 22 10
296 102.57 temperature 20.0 270 > th dose independent rect. 6 9
300 102.58 wind 1.0 14400 < th dose independent rect. 19 7
301 102.58 radiation 40.0 4320 < th dose dependent rect. 3 5
315 102.63 humidity 70.0 43200 < th dose independent rect. 11 1
316 102.63 temperature 10.0 90 > th dose dependent sin 4 NA
335 102.75 wind 1.0 43200 > th dose independent sin 17 NA
345 102.83 temperature 20.0 43200 < th dose independent rect. 21 1
354 102.87 humidity 80.0 43200 < th dose independent rect. 6 4
356 102.88 temperature 20.0 43200 > th dose independent rect. 21 1
395 103.05 wind 1.0 14400 > th dose independent rect. 19 7
399 103.06 wind 1.0 43200 < th dose independent sin 17 NA
420 103.13 precipitation 0.1 43200 > th dose independent rect. 13 6
470 103.25 precipitation 0.1 43200 > th dose dependent rect. 13 4
473 103.26 precipitation 0.1 43200 < th dose independent rect. 13 6
477 103.26 precipitation 0.1 43200 < th dose dependent rect. 13 6
480 103.30 humidity 80.0 43200 > th dose independent rect. 5 5
514 103.41 precipitation 0.1 43200 > th dose independent rect. 14 4
520 103.42 radiation 10.0 43200 > th dose independent rect. 8 1
541 103.44 wind 7.0 43200 > th dose independent sin 10 NA
559 103.48 humidity 80.0 43200 > th dose independent rect. 6 3
561 103.48 humidity 70.0 43200 > th dose independent rect. 2 13
562 103.49 wind 7.0 43200 < th dose independent sin 10 NA
629 103.64 wind 9.0 43200 < th dose independent rect. 14 23
655 103.69 wind 1.0 14400 < th dose dependent rect. 18 7
658 103.70 wind 1.0 14400 < th dose dependent rect. 22 3
694 103.79 wind 7.0 43200 > th dose independent rect. 19 11
729 103.86 radiation 10.0 43200 < th dose dependent rect. 12 2
751 103.87 wind 5.0 43200 > th dose dependent sin 10 NA
773 103.91 humidity 50.0 43200 > th dose independent rect. 8 1
776 103.91 wind 7.0 43200 < th dose independent rect. 19 11
805 103.95 temperature 15.0 270 > th dose dependent rect. 17 22
899 104.13 radiation 10.0 43200 < th dose independent rect. 18 6
912 104.15 wind 9.0 43200 > th dose independent rect. 14 23
927 104.17 humidity 90.0 43200 < th dose dependent rect. 8 1
980 104.26 wind 7.0 43200 > th dose dependent rect. 19 1
994 104.27 precipitation 0.1 43200 > th dose dependent rect. 12 7