Os04g0600000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transfactor-like protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0600000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Transfactor-like protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.61 | 0.505 | 6.95 | -2.39 | 1.47 | -0.901 | 1.09 | 2.58 | -0.642 | 22 | 10.93 | 1651 | -- | -- |
| 122.59 | 0.516 | 6.93 | -2.16 | 1.48 | -0.95 | 1.84 | -- | -0.569 | 22.2 | 9.404 | 1689 | -- | -- |
| 117.95 | 0.506 | 6.96 | -2.53 | 1.53 | -1.03 | -- | 3.47 | -0.665 | 22.2 | 8.051 | 1651 | -- | -- |
| 135.37 | 0.542 | 6.95 | -2.25 | 1.47 | -0.944 | -- | -- | -0.607 | 21.9 | 9.575 | 1638 | -- | -- |
| 160.14 | 0.589 | 6.91 | -2.38 | -- | -1.62 | -- | -1.45 | -0.739 | -- | 5.001 | 2503 | -- | -- |
| 136.34 | 0.547 | 6.91 | -2.18 | 1.29 | -- | 1.84 | -- | -0.461 | 21.4 | -- | -- | -- | -- |
| 148.19 | 0.57 | 6.91 | -2.24 | 1.3 | -- | -- | -- | -0.461 | 21.1 | -- | -- | -- | -- |
| 156.89 | 0.583 | 6.93 | -2.36 | -- | -1.89 | -- | -- | -0.728 | -- | 5.356 | 2489 | -- | -- |
| 264.14 | 0.757 | 6.96 | -- | 1.42 | -1.17 | -- | -- | -0.41 | 22 | 9.773 | 4717 | -- | -- |
| 245.21 | 0.732 | 6.88 | -2.24 | -- | -- | -- | -- | -0.468 | -- | -- | -- | -- | -- |
| 280.83 | 0.784 | 6.85 | -- | 1.3 | -- | -- | -- | -0.211 | 21 | -- | -- | -- | -- |
| 283.32 | 0.784 | 6.88 | -- | -- | -1.99 | -- | -- | -0.522 | -- | 10 | 2466 | -- | -- |
| 377.53 | 0.907 | 6.82 | -- | -- | -- | -- | -- | -0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.36 | radiation | 10 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 2 | 113.86 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 4 | 114.17 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 13 |
| 6 | 114.36 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 10 |
| 12 | 114.63 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 15 | 114.72 | radiation | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 25 | 115.56 | radiation | 1 | 720 | > th | dose dependent | rect. | 16 | 16 |
| 44 | 116.35 | radiation | 10 | 720 | < th | dose independent | rect. | 3 | 20 |
| 53 | 116.86 | radiation | 1 | 720 | > th | dose dependent | sin | 12 | NA |
| 54 | 116.87 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 55 | 116.92 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 62 | 117.13 | radiation | 10 | 720 | < th | dose dependent | rect. | 23 | 18 |
| 76 | 117.42 | radiation | 10 | 720 | < th | dose independent | rect. | 23 | 22 |
| 82 | 117.64 | radiation | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 89 | 117.84 | radiation | 10 | 720 | < th | dose dependent | sin | 23 | NA |
| 97 | 118.04 | radiation | 10 | 720 | < th | dose dependent | sin | 5 | NA |
| 106 | 118.09 | radiation | 20 | 1440 | < th | dose independent | rect. | 15 | 17 |
| 107 | 118.09 | radiation | 20 | 720 | < th | dose independent | rect. | 18 | 23 |
| 138 | 118.41 | radiation | 20 | 720 | < th | dose independent | rect. | 18 | 21 |
| 149 | 118.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 19 |
| 155 | 118.58 | radiation | 10 | 720 | < th | dose independent | rect. | 22 | 19 |
| 167 | 118.79 | radiation | 10 | 720 | < th | dose independent | sin | 7 | NA |
| 174 | 118.87 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 182 | 118.99 | radiation | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 184 | 119.02 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 15 |
| 188 | 119.06 | radiation | 20 | 720 | < th | dose independent | rect. | 16 | 23 |
| 196 | 119.10 | radiation | 20 | 720 | < th | dose independent | no | NA | NA |
| 205 | 119.13 | radiation | 20 | 1440 | < th | dose dependent | sin | 13 | NA |
| 216 | 119.19 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 219 | 119.20 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 234 | 119.29 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 3 |
| 283 | 119.50 | radiation | 20 | 720 | < th | dose independent | rect. | 7 | 23 |
| 303 | 119.63 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 316 | 119.66 | radiation | 1 | 720 | > th | dose dependent | rect. | 11 | 22 |
| 317 | 119.67 | radiation | 40 | 1440 | < th | dose dependent | sin | 13 | NA |
| 324 | 119.71 | radiation | 10 | 720 | < th | dose independent | rect. | 1 | 7 |
| 338 | 119.75 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 375 | 119.88 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 377 | 119.89 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 399 | 119.95 | radiation | 30 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 411 | 119.99 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 429 | 120.05 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 12 |
| 432 | 120.06 | radiation | 10 | 720 | < th | dose independent | sin | 22 | NA |
| 459 | 120.11 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 9 |
| 485 | 120.13 | radiation | 10 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 487 | 120.14 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 614 | 120.31 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 623 | 120.33 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 640 | 120.34 | radiation | 40 | 1440 | < th | dose dependent | rect. | 10 | 23 |
| 642 | 120.35 | radiation | 40 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 666 | 120.40 | radiation | 40 | 1440 | < th | dose independent | rect. | 10 | 15 |
| 670 | 120.40 | radiation | 40 | 1440 | < th | dose independent | rect. | 10 | 21 |
| 695 | 120.43 | radiation | 40 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 731 | 120.52 | radiation | 30 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 786 | 120.65 | radiation | 30 | 1440 | < th | dose dependent | rect. | 15 | 21 |
| 795 | 120.67 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 819 | 120.72 | atmosphere | 1010 | 720 | > th | dose independent | rect. | 4 | 5 |
| 820 | 120.72 | radiation | 20 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 831 | 120.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 15 |
| 836 | 120.74 | radiation | 10 | 720 | < th | dose independent | rect. | 23 | 10 |
| 848 | 120.75 | radiation | 20 | 1440 | < th | dose independent | rect. | 10 | 8 |
| 968 | 120.81 | radiation | 20 | 720 | < th | dose dependent | rect. | 1 | 7 |