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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0844900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.3 (0.0354) R2 : 0.583
β1 : -0.823 (0.13) R2dD : 0.0381 R2D : 0.043
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.73 (0.072) R2dE : 0.529 R2E : 0.525
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.247 (0.0756) R2dN8 : 0.0128 R2N8 : 0.016
σ : 0.663
deviance : 202.38
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 4.8
memory length : 268
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
189.87 0.647 4.29 -0.893 0.675 1.42 -1.36 -0.0852 0.237 5.17 7.48 125 -- --
189.89 0.642 4.29 -0.888 0.683 1.41 -1.38 -- 0.239 5.04 7.43 124 -- --
193.77 0.648 4.28 -0.897 0.752 1.28 -- -0.348 0.241 4.35 7.835 125 -- --
194.55 0.65 4.29 -0.897 0.76 1.27 -- -- 0.234 4.27 7.881 124 -- --
200.84 0.66 4.32 -0.845 -- 1.76 -- -0.608 0.217 -- 5.1 264 -- --
213.39 0.685 4.32 -0.932 2.02 -- -0.557 -- 0.175 2.06 -- -- -- --
214.55 0.686 4.32 -0.916 2.02 -- -- -- 0.179 2.03 -- -- -- --
202.38 0.663 4.3 -0.823 -- 1.73 -- -- 0.247 -- 4.8 268 -- --
216.02 0.685 4.27 -- 0.82 1.21 -- -- 0.332 3.74 13.02 124 -- --
459.35 1 4.3 -0.832 -- -- -- -- 0.226 -- -- -- -- --
236.64 0.72 4.3 -- 2 -- -- -- 0.281 2.02 -- -- -- --
219.98 0.691 4.28 -- -- 1.73 -- -- 0.337 -- 4.009 268 -- --
477.6 1.02 4.28 -- -- -- -- -- 0.318 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 183.94 humidity 70.0 10 > th dose dependent rect. 4 16
4 184.81 radiation 10.0 90 < th dose dependent rect. 3 22
5 185.47 humidity 80.0 10 > th dose independent rect. 4 16
9 186.29 humidity 70.0 10 > th dose dependent rect. 3 22
15 186.63 humidity 80.0 30 < th dose independent rect. 24 18
26 187.10 radiation 1.0 90 < th dose independent rect. 3 22
30 187.25 radiation 1.0 90 > th dose independent sin 23 NA
42 188.01 humidity 70.0 30 > th dose dependent rect. 8 12
67 189.17 radiation 1.0 30 < th dose dependent rect. 4 16
97 190.00 radiation 1.0 90 < th dose dependent sin 23 NA
103 190.22 radiation 1.0 90 < th dose independent sin 23 NA
104 190.26 radiation 1.0 30 < th dose independent rect. 4 16
107 190.32 radiation 10.0 10 < th dose dependent rect. 4 21
109 190.45 radiation 1.0 90 < th dose dependent rect. 6 13
112 190.56 radiation 10.0 10 < th dose dependent rect. 3 23
142 191.34 humidity 80.0 10 > th dose independent rect. 3 22
172 191.73 radiation 10.0 90 < th dose dependent rect. 21 23
175 191.83 temperature 10.0 90 > th dose dependent rect. 11 16
186 191.93 radiation 10.0 90 < th dose dependent rect. 17 23
192 192.03 radiation 10.0 90 < th dose dependent rect. 15 23
205 192.25 radiation 10.0 90 < th dose dependent rect. 13 23
210 192.29 humidity 70.0 10 > th dose dependent sin 22 NA
211 192.32 radiation 10.0 90 < th dose dependent rect. 11 23
212 192.33 radiation 10.0 90 < th dose dependent no NA NA
217 192.36 humidity 70.0 30 > th dose dependent rect. 6 14
225 192.43 atmosphere 995.0 90 > th dose dependent rect. 3 17
250 192.64 humidity 70.0 30 > th dose dependent rect. 21 23
270 192.88 humidity 80.0 30 < th dose independent rect. 9 9
274 192.90 radiation 1.0 270 < th dose dependent rect. 11 8
278 192.92 radiation 10.0 90 < th dose dependent rect. 9 23
283 192.98 humidity 80.0 10 > th dose independent rect. 8 12
285 192.99 radiation 1.0 90 < th dose independent rect. 6 13
299 193.06 humidity 80.0 10 > th dose independent rect. 4 14
315 193.17 radiation 1.0 90 > th dose independent rect. 6 12
322 193.21 humidity 60.0 10 > th dose dependent rect. 18 2
358 193.47 temperature 25.0 270 < th dose independent rect. 12 21
370 193.53 humidity 70.0 90 > th dose dependent rect. 17 3
388 193.67 humidity 70.0 10 > th dose dependent rect. 16 4
395 193.74 temperature 10.0 90 > th dose dependent rect. 20 7
413 193.82 atmosphere 995.0 90 > th dose dependent rect. 3 8
422 193.85 humidity 70.0 10 > th dose dependent rect. 17 23
430 193.89 humidity 70.0 10 > th dose dependent rect. 23 23
441 193.95 radiation 1.0 270 < th dose independent rect. 11 8
442 193.96 radiation 1.0 270 > th dose independent rect. 17 23
459 194.03 humidity 70.0 30 > th dose dependent rect. 13 23
464 194.05 humidity 70.0 10 > th dose dependent no NA NA
467 194.06 temperature 30.0 90 < th dose dependent rect. 18 1
479 194.11 humidity 70.0 30 > th dose dependent rect. 11 23
516 194.26 humidity 80.0 10 > th dose independent sin 23 NA
519 194.27 temperature 10.0 10 > th dose dependent rect. 20 8
557 194.41 wind 5.0 4320 > th dose dependent rect. 21 3
607 194.58 humidity 70.0 30 > th dose dependent rect. 23 21
620 194.64 humidity 60.0 90 > th dose dependent rect. 3 12
631 194.68 humidity 80.0 90 > th dose independent rect. 3 12
653 194.76 humidity 80.0 10 > th dose independent rect. 4 12
695 194.93 humidity 50.0 90 > th dose dependent rect. 3 8
710 194.98 humidity 70.0 10 > th dose dependent rect. 9 23
761 195.19 radiation 30.0 90 < th dose dependent rect. 3 11
793 195.27 humidity 60.0 10 > th dose dependent rect. 4 10
795 195.28 atmosphere 1005.0 90 > th dose independent rect. 3 8
799 195.30 humidity 80.0 30 < th dose independent sin 0 NA
841 195.42 temperature 30.0 10 < th dose dependent rect. 18 2
844 195.42 temperature 25.0 270 < th dose dependent rect. 13 18
849 195.43 humidity 50.0 10 > th dose dependent rect. 18 17
857 195.46 radiation 20.0 10 < th dose dependent rect. 18 16
884 195.56 humidity 80.0 270 < th dose independent sin 2 NA
885 195.56 atmosphere 1005.0 720 > th dose independent rect. 18 7
888 195.57 humidity 80.0 270 > th dose independent sin 2 NA
909 195.62 humidity 80.0 30 < th dose independent rect. 9 23
953 195.72 radiation 1.0 90 < th dose independent rect. 21 23
966 195.74 precipitation 0.1 90 < th dose independent rect. 19 23
970 195.74 precipitation 0.1 90 < th dose dependent rect. 19 23
973 195.75 radiation 30.0 10 < th dose dependent rect. 4 10
996 195.80 atmosphere 1005.0 720 > th dose independent rect. 18 10