Os07g0119300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Twin-arginine translocation pathway signal domain containing protein.
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Os07g0119300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Twin-arginine translocation pathway signal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 218.43 | 0.694 | 13.6 | 1 | 1.09 | -2.89 | 0.682 | 10.8 | -0.71 | 8.29 | 30.16 | 1172 | -- | -- |
| 222.87 | 0.695 | 13.8 | -0.695 | 1 | -1.78 | 0.737 | -- | -0.602 | 7.88 | 28.64 | 1160 | -- | -- |
| 219.82 | 0.691 | 13.6 | 1.04 | 1.08 | -2.91 | -- | 10.8 | -0.709 | 8.22 | 30.1 | 1170 | -- | -- |
| 223.21 | 0.696 | 13.8 | -0.698 | 1.07 | -1.76 | -- | -- | -0.568 | 8.06 | 28.5 | 1167 | -- | -- |
| 267.24 | 0.761 | 13.6 | 0.985 | -- | -3.38 | -- | 11 | -0.419 | -- | 28.27 | 965 | -- | -- |
| 355.66 | 0.884 | 13.7 | -1.21 | 1.21 | -- | 1.02 | -- | -0.398 | 9.11 | -- | -- | -- | -- |
| 359.19 | 0.888 | 13.7 | -1.18 | 1.21 | -- | -- | -- | -0.398 | 8.99 | -- | -- | -- | -- |
| 266.08 | 0.76 | 13.8 | -0.616 | -- | -2.37 | -- | -- | -0.371 | -- | 26.6 | 958 | -- | -- |
| 235.33 | 0.714 | 13.8 | -- | 1.06 | -1.89 | -- | -- | -0.451 | 8.04 | 28.08 | 1176 | -- | -- |
| 443.74 | 0.984 | 13.8 | -1.18 | -- | -- | -- | -- | -0.39 | -- | -- | -- | -- | -- |
| 395.67 | 0.93 | 13.7 | -- | 1.21 | -- | -- | -- | -0.267 | 9.07 | -- | -- | -- | -- |
| 274.91 | 0.772 | 13.8 | -- | -- | -2.5 | -- | -- | -0.28 | -- | 26.4 | 959 | -- | -- |
| 480.34 | 1.02 | 13.7 | -- | -- | -- | -- | -- | -0.259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 218.23 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 2 | 219.08 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 3 | 220.81 | radiation | 20 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 6 | 222.12 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 18 |
| 7 | 222.93 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 8 | 222.99 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 19 |
| 11 | 223.72 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 19 |
| 14 | 224.16 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 9 |
| 22 | 224.86 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 5 |
| 31 | 225.50 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 20 |
| 35 | 226.17 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 95 | 227.24 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 98 | 227.32 | radiation | 40 | 1440 | > th | dose dependent | sin | 13 | NA |
| 104 | 227.54 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 124 | 228.31 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 126 | 228.49 | temperature | 30 | 1440 | > th | dose dependent | rect. | 15 | 21 |
| 127 | 228.59 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 19 |
| 130 | 228.71 | radiation | 10 | 1440 | > th | dose dependent | rect. | 17 | 14 |
| 135 | 228.95 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 139 | 229.23 | temperature | 30 | 1440 | > th | dose dependent | sin | 10 | NA |
| 140 | 229.23 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 151 | 230.13 | temperature | 30 | 1440 | > th | dose dependent | rect. | 9 | 10 |
| 167 | 230.18 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 259 | 230.23 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 2 |
| 293 | 230.42 | temperature | 30 | 1440 | > th | dose dependent | sin | 1 | NA |
| 316 | 230.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 346 | 231.19 | humidity | 50 | 4320 | < th | dose independent | sin | 11 | NA |
| 380 | 231.37 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 404 | 231.55 | radiation | 20 | 1440 | < th | dose dependent | rect. | 17 | 13 |
| 425 | 231.69 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 447 | 231.87 | temperature | 30 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 454 | 232.04 | humidity | 50 | 4320 | > th | dose independent | sin | 12 | NA |
| 516 | 232.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 517 | 232.40 | temperature | 30 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 522 | 232.48 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 555 | 232.63 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 572 | 232.71 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 593 | 232.81 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 601 | 232.91 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 667 | 233.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 670 | 233.82 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 704 | 234.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 711 | 234.33 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 712 | 234.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 722 | 234.43 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 10 |
| 796 | 235.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 802 | 235.31 | radiation | 10 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 822 | 235.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 887 | 236.15 | radiation | 10 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 918 | 236.49 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 936 | 236.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 937 | 236.63 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 946 | 236.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 948 | 236.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 949 | 236.69 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 20 |
| 952 | 236.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 18 |
| 955 | 236.72 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 22 |
| 959 | 236.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 20 |
| 965 | 236.74 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 979 | 236.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 980 | 236.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 981 | 236.78 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 982 | 236.79 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 1000 | 236.83 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |