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Os12g0586300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transfactor-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.1 (0.0345) R2 : 0.655
β1 : -2.86 (0.127) R2dD : 0.404 R2D : 0.313
β2 : 1.67 (0.0934) R2dC : 0.279 R2C : 0.0934
β3 : 1.54 (0.0995) R2dE : 0.212 R2E : -0.016
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.496 (0.074) R2dN8 : 0.046 R2N8 : -0.0293
σ : 0.645
deviance : 191.61
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C
peak time of C : 8.19
E
wheather : temperature
threshold : 14.54
memory length : 96
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.9
open length of G : 9.92

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.53 0.617 11.1 -3.06 1.7 1.61 1.63 -1.7 -0.533 8.28 14.42 94 19 9.87
175.89 0.618 11.1 -2.95 1.73 1.62 2.22 -- -0.473 8.41 14.41 95 18.9 9.88
178.26 0.622 11.1 -3.08 1.77 1.64 -- -2.69 -0.549 8.28 13.73 102 18.9 9.82
191.61 0.645 11.1 -2.86 1.67 1.54 -- -- -0.496 8.19 14.54 96 18.9 9.92
219.85 0.691 11.1 -2.98 -- 2.04 -- -0.184 -0.572 -- 1.783 448 18 15.7
225.23 0.704 11.1 -2.73 1.63 -- 1.1 -- -0.388 5.72 -- -- -- --
227.77 0.707 11.1 -2.72 1.64 -- -- -- -0.393 5.53 -- -- -- --
218.93 0.689 11.1 -2.82 -- 2.01 -- -- -0.502 -- 0.4988 448 18 15.6
402.9 0.935 11 -- 1.6 1.21 -- -- -0.118 7.83 11.6 86 19.2 9.58
367.14 0.895 11.1 -2.67 -- -- -- -- -0.353 -- -- -- -- --
423.11 0.962 11 -- 1.59 -- -- -- -0.09 5.6 -- -- -- --
427.08 0.963 11.1 -- -- 1.87 -- -- -0.194 -- -6.849 492 18.3 14.6
554.99 1.1 11 -- -- -- -- -- -0.0574 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 173.23 temperature 15.0 90 > th dose dependent rect. 19 10
51 184.45 temperature 15.0 270 > th dose dependent rect. 19 3
107 188.79 humidity 90.0 90 < th dose independent rect. 19 11
120 189.78 temperature 15.0 90 > th dose independent rect. 19 10
161 191.26 humidity 90.0 90 < th dose independent rect. 19 8
187 192.12 humidity 90.0 10 < th dose independent rect. 20 10
188 192.17 humidity 90.0 720 < th dose independent rect. 9 14
211 192.61 atmosphere 1010.0 90 < th dose independent rect. 19 10
222 192.89 wind 1.0 270 > th dose independent rect. 18 11
229 193.00 temperature 10.0 720 > th dose dependent rect. 6 3
239 193.27 temperature 25.0 270 > th dose independent rect. 19 2
247 193.50 humidity 90.0 720 < th dose independent rect. 9 16
260 193.74 temperature 25.0 270 > th dose independent rect. 18 4
263 193.77 humidity 90.0 720 < th dose independent rect. 10 11
307 194.39 humidity 90.0 90 < th dose independent rect. 19 21
335 194.75 humidity 90.0 10 < th dose independent rect. 20 20
346 194.92 temperature 20.0 270 > th dose independent rect. 18 7
368 195.23 humidity 90.0 720 < th dose independent sin 19 NA
369 195.23 temperature 20.0 720 > th dose dependent rect. 6 2
408 195.57 temperature 10.0 90 > th dose dependent rect. 5 14
412 195.62 humidity 90.0 720 < th dose independent rect. 17 6
437 195.90 temperature 15.0 720 > th dose dependent rect. 11 12
439 195.91 temperature 30.0 90 < th dose independent rect. 19 10
440 195.91 humidity 50.0 90 > th dose independent rect. 19 10
442 195.91 atmosphere 995.0 90 > th dose independent rect. 19 10
443 195.91 radiation 20.0 90 < th dose independent rect. 19 10
446 195.91 temperature 10.0 90 > th dose independent rect. 5 14
447 195.91 atmosphere 1015.0 90 < th dose independent rect. 5 14
449 195.92 wind 9.0 90 < th dose independent rect. 19 10
455 195.94 radiation 40.0 90 < th dose dependent rect. 19 10
466 196.02 radiation 1.0 90 < th dose independent rect. 19 10
478 196.10 precipitation 0.1 90 < th dose independent rect. 19 10
479 196.10 precipitation 0.1 90 < th dose dependent rect. 19 10
480 196.11 temperature 25.0 720 > th dose independent rect. 16 6
487 196.22 temperature 15.0 270 > th dose independent rect. 18 17
491 196.27 radiation 1.0 720 > th dose independent rect. 10 8
504 196.34 radiation 1.0 720 > th dose independent rect. 10 19
521 196.56 temperature 15.0 270 > th dose independent rect. 9 14
546 196.70 radiation 10.0 90 < th dose dependent rect. 19 12
581 196.94 temperature 15.0 720 > th dose dependent rect. 13 9
583 196.96 radiation 10.0 90 < th dose dependent rect. 19 14
594 197.02 atmosphere 1015.0 720 < th dose independent rect. 11 18
598 197.05 humidity 90.0 10 < th dose independent rect. 20 5
599 197.05 wind 9.0 90 < th dose independent rect. 5 14
616 197.15 radiation 1.0 720 < th dose dependent rect. 7 23
635 197.27 precipitation 0.1 90 < th dose independent rect. 5 14
637 197.27 precipitation 0.1 90 < th dose dependent rect. 5 14
642 197.31 atmosphere 1015.0 720 < th dose independent rect. 17 6
647 197.33 radiation 30.0 720 < th dose independent rect. 23 9
648 197.33 temperature 20.0 720 > th dose independent rect. 6 11
649 197.34 temperature 15.0 270 > th dose dependent sin 12 NA
660 197.43 radiation 1.0 720 < th dose dependent rect. 18 23
663 197.44 temperature 15.0 720 > th dose independent rect. 11 10
668 197.46 radiation 1.0 720 < th dose dependent rect. 9 21
672 197.50 radiation 40.0 30 < th dose independent rect. 5 15
678 197.52 atmosphere 1015.0 720 < th dose independent rect. 18 19
709 197.76 temperature 20.0 720 > th dose independent rect. 6 16
721 197.80 radiation 1.0 720 < th dose dependent rect. 4 13
753 198.01 radiation 1.0 720 < th dose dependent rect. 12 18
754 198.03 temperature 20.0 720 > th dose independent rect. 5 14
755 198.03 radiation 1.0 90 < th dose independent rect. 19 15
756 198.03 radiation 1.0 90 < th dose independent rect. 19 17
757 198.05 atmosphere 995.0 90 > th dose independent rect. 5 14
761 198.06 radiation 10.0 10 < th dose dependent rect. 19 12
768 198.10 temperature 25.0 720 > th dose independent rect. 6 2
830 198.31 radiation 1.0 90 < th dose dependent sin 13 NA
880 198.42 atmosphere 1010.0 270 < th dose independent rect. 19 2
920 198.55 radiation 10.0 10 < th dose dependent rect. 19 17
921 198.56 radiation 1.0 720 < th dose dependent no NA NA
925 198.57 humidity 50.0 30 > th dose independent rect. 5 14
946 198.63 radiation 1.0 720 < th dose dependent rect. 3 15
962 198.68 radiation 1.0 720 < th dose dependent rect. 22 23
965 198.70 atmosphere 1015.0 720 < th dose independent rect. 11 10