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Os03g0764600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.1 (0.0436) R2 : 0.736
β1 : -2.7 (0.163) R2dD : 0.184 R2D : 0.193
β2 : 2.51 (0.109) R2dC : 0.332 R2C : 0.165
β3 : -3.25 (0.183) R2dE : 0.225 R2E : 0.175
β4 : 2.94 (0.405) R2dD*C : 0.0311 R2D*C : 0.00167
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.89 (0.0949) R2dN8 : 0.0761 R2N8 : 0.0648
σ : 0.805
deviance : 299.05
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C
peak time of C : 10.2
E
wheather : temperature
threshold : 16.21
memory length : 323
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.6
open length of G : 20.5

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
297.54 0.81 13.1 -2.54 2.48 -3.3 2.76 1.42 -0.85 10.3 16.62 316 21.7 20.5
299.05 0.805 13.1 -2.7 2.51 -3.25 2.94 -- -0.89 10.2 16.21 323 21.6 20.5
324.58 0.839 13.1 -2.18 2.49 -3.31 -- 3.31 -0.78 10.2 16.61 313 21.8 20.4
333.72 0.851 13.1 -2.62 2.47 -3.28 -- -- -0.901 10.1 15.92 332 21.4 20.6
353.7 0.876 13.2 -2.69 -- -4.29 -- -2.21 -0.811 -- -14.5 983 0.601 20
459.01 1 13.2 -3.43 2.24 -- 2.87 -- -1.36 8.56 -- -- -- --
484.76 1.03 13.2 -3.34 2.25 -- -- -- -1.36 8.35 -- -- -- --
352.24 0.874 13.2 -2.61 -- -4.19 -- -- -0.917 -- -3.416 920 1.82 19.5
507.72 1.05 13.1 -- 2.47 -4.21 -- -- -0.52 9.75 14.47 437 19.9 21.2
765.68 1.29 13.3 -3.33 -- -- -- -- -1.34 -- -- -- -- --
779.54 1.31 13.2 -- 2.23 -- -- -- -0.989 8.46 -- -- -- --
493.58 1.03 13 -- -- -5.67 -- -- -0.328 -- 14.98 954 2.43 16.3
1058.34 1.52 13.2 -- -- -- -- -- -0.968 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 301.85 temperature 15 270 > th dose dependent rect. 22 21
23 310.37 radiation 1 14400 < th dose dependent rect. 4 1
27 311.08 temperature 20 270 > th dose dependent rect. 10 23
28 311.20 temperature 20 1440 > th dose dependent rect. 7 2
31 311.67 temperature 20 1440 > th dose dependent rect. 5 5
85 317.14 temperature 10 1440 > th dose dependent rect. 7 2
88 317.25 temperature 30 1440 < th dose dependent rect. 7 2
108 318.94 temperature 20 270 > th dose dependent rect. 7 23
117 319.28 temperature 20 1440 > th dose dependent rect. 17 19
119 319.38 temperature 20 1440 > th dose dependent sin 5 NA
136 319.92 temperature 20 1440 > th dose dependent rect. 21 15
141 320.07 temperature 20 270 > th dose dependent no NA NA
164 320.59 temperature 15 30 > th dose dependent rect. 24 21
239 322.04 temperature 25 1440 > th dose dependent rect. 6 13
283 322.59 temperature 20 1440 > th dose dependent rect. 2 21
360 323.25 radiation 40 43200 < th dose independent rect. 10 1
362 323.26 temperature 20 1440 > th dose dependent no NA NA
363 323.26 radiation 1 1440 < th dose dependent rect. 20 9
523 324.38 temperature 10 720 > th dose dependent rect. 6 19
712 326.09 temperature 20 1440 > th dose dependent rect. 17 6
713 326.09 temperature 10 270 > th dose dependent rect. 13 15
815 327.15 temperature 25 4320 > th dose independent rect. 17 1
826 327.26 temperature 20 270 > th dose dependent rect. 2 23
849 327.48 temperature 25 4320 < th dose independent rect. 17 1
869 327.60 radiation 40 43200 > th dose independent rect. 10 1