Os01g0176700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os01g0176700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 101.93 | 0.474 | 8.44 | 0.774 | 0.979 | -0.332 | -0.126 | -2.59 | 0.178 | 16.1 | 0.137 | 5167 | -- | -- |
| 105.31 | 0.478 | 8.39 | 0.812 | 0.965 | -0.662 | -0.366 | -- | 0.187 | 15.8 | 0.5288 | 6759 | -- | -- |
| 101.9 | 0.47 | 8.44 | 0.764 | 0.98 | -0.364 | -- | -2.49 | 0.171 | 16.1 | 0.1552 | 5293 | -- | -- |
| 103.96 | 0.475 | 8.43 | 0.781 | 0.961 | -0.74 | -- | -- | 0.107 | 16 | 0.4192 | 6330 | -- | -- |
| 153.71 | 0.577 | 8.44 | 0.739 | -- | -0.317 | -- | -2.84 | 0.151 | -- | 0.1758 | 5293 | -- | -- |
| 119.01 | 0.511 | 8.38 | 0.529 | 0.998 | -- | 0.0242 | -- | 0.229 | 16.1 | -- | -- | -- | -- |
| 119.02 | 0.511 | 8.38 | 0.529 | 0.998 | -- | -- | -- | 0.229 | 16.1 | -- | -- | -- | -- |
| 156.74 | 0.583 | 8.41 | 0.818 | -- | -0.842 | -- | -- | 0.126 | -- | 0.4626 | 6464 | -- | -- |
| 117.23 | 0.504 | 8.41 | -- | 0.955 | -0.587 | -- | -- | 0.0877 | 16.1 | 0.3086 | 6460 | -- | -- |
| 173.14 | 0.615 | 8.38 | 0.489 | -- | -- | -- | -- | 0.203 | -- | -- | -- | -- | -- |
| 126.39 | 0.526 | 8.4 | -- | 0.988 | -- | -- | -- | 0.17 | 16.1 | -- | -- | -- | -- |
| 169.73 | 0.607 | 8.41 | -- | -- | -0.659 | -- | -- | 0.0649 | -- | 0.3486 | 6605 | -- | -- |
| 179.43 | 0.625 | 8.39 | -- | -- | -- | -- | -- | 0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 99.67 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 4 | 100.74 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 10 | 101.18 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 13 | 101.45 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 10 | 14 |
| 16 | 101.46 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 10 | 17 |
| 20 | 101.48 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 12 |
| 32 | 101.53 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 18 |
| 33 | 101.53 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 6 | 21 |
| 43 | 101.58 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 4 |
| 59 | 101.71 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 18 | NA |
| 65 | 101.77 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 115 | 102.35 | humidity | 70.0 | 720 | > th | dose independent | rect. | 17 | 11 |
| 117 | 102.37 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 120 | 102.44 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 138 | 102.63 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 148 | 102.74 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 23 |
| 151 | 102.77 | temperature | 25.0 | 720 | > th | dose independent | rect. | 6 | 3 |
| 161 | 102.82 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 17 | 23 |
| 189 | 102.94 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 3 | 17 |
| 197 | 102.96 | precipitation | 0.1 | 4320 | > th | dose dependent | no | NA | NA |
| 200 | 102.96 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 23 |
| 239 | 103.17 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 250 | 103.24 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 260 | 103.28 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 20 | NA |
| 261 | 103.29 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 20 | NA |
| 262 | 103.29 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 20 | NA |
| 276 | 103.34 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 10 |
| 279 | 103.35 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 9 |
| 280 | 103.35 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 9 |
| 297 | 103.39 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 305 | 103.41 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 22 | 3 |
| 374 | 103.61 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 16 |
| 376 | 103.63 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 6 |
| 379 | 103.63 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 6 |
| 388 | 103.67 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 6 |
| 392 | 103.68 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 396 | 103.68 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 4 |
| 406 | 103.69 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 427 | 103.75 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 442 | 103.80 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 22 |
| 451 | 103.84 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 456 | 103.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 17 |
| 470 | 103.88 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 15 |
| 491 | 103.93 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 492 | 103.93 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 498 | 103.94 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 19 |
| 532 | 103.99 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 761 | 104.34 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 778 | 104.36 | temperature | 20.0 | 270 | > th | dose dependent | sin | 2 | NA |
| 794 | 104.37 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 796 | 104.38 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 820 | 104.41 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 17 |
| 848 | 104.45 | temperature | 25.0 | 30 | > th | dose dependent | sin | 21 | NA |
| 874 | 104.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 7 |
| 895 | 104.49 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 12 |
| 905 | 104.51 | temperature | 25.0 | 30 | > th | dose dependent | no | NA | NA |
| 915 | 104.52 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 941 | 104.55 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 976 | 104.59 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 983 | 104.60 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 998 | 104.62 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 17 | 9 |