FiT-DB / Search/ Help/ Sample detail

Os06g0703900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0282) R2 : 0.855
β1 : -5.21 (0.132) R2dD : 1.11 R2D : 0.351
β2 : 0.948 (0.0611) R2dC : 0.059 R2C : -0.0547
β3 : 2.63 (0.205) R2dE : 0.164 R2E : 0.0714
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.56 (0.675) R2dD*E : 0.327 R2D*E : -0.895
γ1 : -1.17 (0.058) R2dN8 : 0.204 R2N8 : -0.0312
σ : 0.465
deviance : 99.84
__
_____
C
peak time of C : 1.05
E
wheather : radiation
threshold : 0.4813
memory length : 8808
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.74 0.457 12.4 -5.3 1.08 2.58 1.76 9.33 -1.17 0.705 0.1717 4316 -- --
143.48 0.562 12.2 -4.07 0.638 0.328 1.51 -- -1.01 1.1 0.1717 4316 -- --
99.84 0.465 12.4 -5.21 0.948 2.63 -- 9.56 -1.17 1.05 0.4813 8808 -- --
124.18 0.519 12.1 -3.52 0.942 1.34 -- -- -0.564 23.8 2.917 25055 -- --
119.07 0.508 12.4 -5.11 -- 2.96 -- 9.84 -1.15 -- 0.17 7509 -- --
146.16 0.567 12.2 -4.1 1 -- 1.5 -- -1.02 0.575 -- -- -- --
155.79 0.585 12.2 -4.15 0.997 -- -- -- -1.03 0.546 -- -- -- --
161.05 0.594 12.2 -4.08 -- 0.724 -- -- -0.988 -- 0.17 7509 -- --
178.2 0.622 11.9 -- 1.02 3.09 -- -- 0.216 1.07 2.429e-06 47520 -- --
218.14 0.69 12.2 -4.12 -- -- -- -- -1.01 -- -- -- -- --
610.2 1.16 12.1 -- 0.936 -- -- -- -0.569 0.327 -- -- -- --
244.38 0.728 11.9 -- -- 3.2 -- -- 0.323 -- 0.00556 47520 -- --
665.34 1.2 12.1 -- -- -- -- -- -0.558 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 82.59 radiation 1.0 43200 < th dose dependent rect. 7 1
2 82.99 radiation 1.0 43200 > th dose independent rect. 7 5
3 82.99 radiation 1.0 43200 < th dose independent rect. 7 5
13 83.91 radiation 1.0 43200 < th dose dependent rect. 7 5
27 85.71 radiation 1.0 14400 < th dose independent rect. 6 9
28 85.78 wind 1.0 43200 < th dose independent rect. 13 6
29 85.79 radiation 1.0 14400 > th dose independent rect. 6 9
32 86.18 wind 1.0 43200 > th dose independent rect. 13 6
33 86.67 radiation 30.0 43200 > th dose dependent rect. 16 1
50 86.86 wind 1.0 43200 < th dose dependent rect. 13 6
51 86.91 temperature 20.0 43200 < th dose dependent rect. 22 1
53 87.09 radiation 1.0 43200 < th dose independent rect. 9 3
54 87.10 radiation 1.0 43200 > th dose independent rect. 9 3
56 87.13 wind 1.0 43200 > th dose independent rect. 16 3
58 87.20 radiation 40.0 43200 < th dose independent rect. 16 16
60 87.28 radiation 1.0 43200 < th dose dependent rect. 9 3
61 87.29 temperature 20.0 43200 < th dose dependent rect. 7 1
69 87.51 radiation 40.0 43200 < th dose independent rect. 2 6
73 87.52 radiation 40.0 43200 < th dose independent rect. 6 2
75 87.56 radiation 40.0 43200 < th dose independent rect. 18 14
96 87.86 temperature 20.0 43200 < th dose dependent rect. 10 17
102 87.90 temperature 20.0 43200 < th dose dependent rect. 7 20
104 87.93 temperature 20.0 43200 < th dose dependent rect. 13 13
145 88.14 temperature 20.0 43200 < th dose dependent sin 17 NA
190 88.44 radiation 20.0 43200 < th dose independent rect. 17 4
216 88.58 temperature 20.0 43200 < th dose dependent rect. 10 22
219 88.60 temperature 20.0 43200 < th dose dependent no NA NA
222 88.61 temperature 20.0 43200 < th dose dependent rect. 21 23
223 88.62 temperature 20.0 43200 < th dose dependent rect. 18 23
228 88.63 temperature 20.0 43200 < th dose dependent rect. 13 23
235 88.64 temperature 20.0 43200 < th dose dependent rect. 16 23
244 88.66 radiation 20.0 43200 < th dose independent rect. 17 10
270 88.71 radiation 40.0 43200 < th dose independent rect. 15 5
319 88.77 radiation 40.0 43200 < th dose independent rect. 15 12
326 88.79 radiation 40.0 43200 < th dose independent rect. 15 2
359 88.87 temperature 20.0 43200 < th dose dependent sin 1 NA
381 88.95 wind 1.0 43200 < th dose independent rect. 13 1
391 88.97 temperature 20.0 43200 < th dose dependent rect. 5 11
397 88.99 temperature 20.0 43200 < th dose dependent rect. 6 6
510 89.41 radiation 10.0 43200 < th dose independent rect. 5 1
523 89.44 temperature 20.0 43200 > th dose independent rect. 11 5
529 89.47 radiation 10.0 43200 < th dose independent rect. 2 4
539 89.49 wind 1.0 43200 > th dose independent rect. 13 1
540 89.49 temperature 20.0 43200 < th dose independent rect. 11 5
574 89.61 temperature 20.0 43200 < th dose independent rect. 7 1
628 90.10 temperature 20.0 43200 < th dose independent rect. 15 1
657 90.37 radiation 10.0 43200 < th dose dependent rect. 18 11
660 90.40 temperature 20.0 43200 < th dose dependent rect. 11 1
663 90.43 temperature 20.0 43200 < th dose independent rect. 7 9
678 90.51 temperature 20.0 43200 > th dose independent rect. 7 1
700 90.66 temperature 20.0 43200 > th dose independent rect. 7 9
735 90.93 humidity 90.0 43200 < th dose independent rect. 2 1
736 90.93 precipitation 0.1 43200 > th dose independent rect. 5 2
741 90.98 humidity 70.0 43200 > th dose dependent rect. 23 17
758 91.12 precipitation 0.1 43200 < th dose independent rect. 5 3
760 91.12 radiation 1.0 43200 > th dose dependent rect. 18 1
763 91.12 precipitation 0.1 43200 < th dose dependent rect. 5 3
783 91.23 precipitation 0.1 43200 > th dose dependent rect. 6 1
803 91.43 precipitation 0.1 43200 > th dose dependent rect. 4 1
811 91.50 temperature 20.0 43200 < th dose independent rect. 7 13
837 91.64 precipitation 0.1 43200 > th dose dependent rect. 5 3
853 91.73 temperature 20.0 43200 < th dose independent rect. 11 9
878 91.91 temperature 20.0 43200 > th dose independent rect. 7 12
885 91.98 radiation 1.0 43200 > th dose independent rect. 4 1
897 91.98 radiation 1.0 43200 > th dose dependent rect. 4 1
929 92.11 radiation 20.0 43200 < th dose dependent rect. 2 3
930 92.12 humidity 90.0 43200 > th dose independent rect. 2 1
941 92.16 radiation 40.0 43200 < th dose dependent rect. 18 5
953 92.22 radiation 40.0 43200 < th dose dependent rect. 18 2
966 92.26 radiation 10.0 43200 < th dose dependent rect. 4 1
991 92.32 radiation 10.0 43200 < th dose dependent rect. 18 9