Os09g0299200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os09g0299200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16.6 | 0.191 | 11.9 | 0.279 | 1.06 | 0.668 | 0.418 | -1.18 | 0.168 | 4.99 | 29.8 | 243 | -- | -- |
| 17.97 | 0.197 | 11.9 | 0.147 | 1.03 | 0.815 | 0.122 | -- | 0.177 | 5.17 | 29.41 | 187 | -- | -- |
| 16.82 | 0.191 | 11.9 | 0.231 | 1.05 | 0.713 | -- | -0.855 | 0.164 | 5.12 | 29.7 | 187 | -- | -- |
| 17.58 | 0.195 | 11.9 | 0.0796 | 1.05 | 0.706 | -- | -- | 0.117 | 5.2 | 29.4 | 148 | -- | -- |
| 58.76 | 0.357 | 11.9 | 0.416 | -- | 1.65 | -- | -0.726 | 0.322 | -- | 31.34 | 240 | -- | -- |
| 24.16 | 0.23 | 12 | -0.0979 | 1.26 | -- | 0.146 | -- | -0.0232 | 4.88 | -- | -- | -- | -- |
| 24.22 | 0.23 | 12 | -0.0984 | 1.26 | -- | -- | -- | -0.024 | 4.88 | -- | -- | -- | -- |
| 59.25 | 0.358 | 11.9 | 0.333 | -- | 1.66 | -- | -- | 0.295 | -- | 30.93 | 241 | -- | -- |
| 17.73 | 0.196 | 11.9 | -- | 1.06 | 0.67 | -- | -- | 0.102 | 5.17 | 29.47 | 149 | -- | -- |
| 107.55 | 0.485 | 12 | -0.0519 | -- | -- | -- | -- | 0.00849 | -- | -- | -- | -- | -- |
| 24.47 | 0.231 | 12 | -- | 1.26 | -- | -- | -- | -0.013 | 4.89 | -- | -- | -- | -- |
| 61.88 | 0.366 | 11.9 | -- | -- | 1.55 | -- | -- | 0.239 | -- | 31.21 | 242 | -- | -- |
| 107.62 | 0.484 | 12 | -- | -- | -- | -- | -- | 0.0142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 7 | 16.39 | temperature | 15 | 720 | > th | dose dependent | rect. | 22 | 19 |
| 18 | 16.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 25 | 16.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 26 | 16.67 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 37 | 16.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 40 | 16.75 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 43 | 16.75 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 62 | 16.84 | temperature | 15 | 720 | > th | dose dependent | sin | 3 | NA |
| 73 | 16.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 12 |
| 78 | 16.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 9 |
| 94 | 16.91 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 95 | 16.92 | temperature | 25 | 270 | < th | dose dependent | sin | 23 | NA |
| 103 | 16.94 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 104 | 16.94 | temperature | 30 | 720 | < th | dose dependent | sin | 2 | NA |
| 108 | 16.95 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 115 | 16.97 | humidity | 90 | 14400 | > th | dose dependent | sin | 10 | NA |
| 119 | 16.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 165 | 17.03 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 193 | 17.09 | temperature | 15 | 270 | > th | dose dependent | no | NA | NA |
| 296 | 17.22 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 10 |
| 363 | 17.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 6 |
| 458 | 17.37 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 462 | 17.37 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 14 |
| 515 | 17.41 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 535 | 17.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 3 |
| 550 | 17.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 15 |
| 584 | 17.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 5 | 10 |
| 613 | 17.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 659 | 17.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 715 | 17.53 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 718 | 17.53 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 3 |
| 721 | 17.53 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 5 |
| 751 | 17.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 776 | 17.55 | temperature | 10 | 1440 | > th | dose dependent | sin | 9 | NA |
| 780 | 17.55 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 783 | 17.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 5 |
| 791 | 17.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 11 |
| 854 | 17.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 23 |
| 910 | 17.58 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |