BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0572900 Os10g0572900|AK102506
(251 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os10g0572900 Protein of unknown function DUF296 domain cont... 445 e-125
Os04g0589900 HMG-I and HMG-Y, DNA-binding domain containing... 277 7e-75
Os09g0491708 HMG-I and HMG-Y, DNA-binding domain containing... 198 4e-51
Os08g0512400 HMG-I and HMG-Y, DNA-binding domain containing... 196 2e-50
Os02g0824300 HMG-I and HMG-Y, DNA-binding domain containing... 185 2e-47
Os02g0125200 HMG-I and HMG-Y, DNA-binding domain containing... 172 2e-43
Os11g0149100 Protein of unknown function DUF296 domain cont... 171 6e-43
Os08g0118000 HMG-I and HMG-Y, DNA-binding domain containing... 158 3e-39
Os12g0147000 Protein of unknown function DUF296 domain cont... 145 2e-35
Os06g0326000 HMG-I and HMG-Y, DNA-binding domain containing... 144 5e-35
Os04g0683900 HMG-I and HMG-Y, DNA-binding domain containing... 127 6e-30
Os03g0105700 Protein of unknown function DUF296 domain cont... 89 2e-18
Os02g0448000 Protein of unknown function DUF296 domain cont... 89 4e-18
Os02g0713700 Protein of unknown function DUF296 domain cont... 87 1e-17
Os09g0464300 87 1e-17
Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing... 85 5e-17
Os04g0590200 Protein of unknown function DUF296 domain cont... 84 7e-17
Os08g0563200 Protein of unknown function DUF296 domain cont... 83 2e-16
Os06g0136900 Protein of unknown function DUF296 domain cont... 82 4e-16
Os03g0270000 Protein of unknown function DUF296 domain cont... 82 5e-16
Os08g0159700 Protein of unknown function DUF296 domain cont... 78 8e-15
Os06g0326900 Protein of unknown function DUF296 domain cont... 76 2e-14
Os08g0478466 Protein of unknown function DUF296 domain cont... 76 2e-14
Os07g0235200 Protein of unknown function DUF296 domain cont... 72 5e-13
Os01g0953801 Protein of unknown function DUF296 domain cont... 70 2e-12
>Os10g0572900 Protein of unknown function DUF296 domain containing protein
Length = 251
Score = 445 bits (1145), Expect = e-125, Method: Compositional matrix adjust.
Identities = 223/251 (88%), Positives = 223/251 (88%)
Query: 1 SSPASDPNAKRRGRPPGSGKKKQFEALGSWGIAFTPHILTVKAGEDVASKIMAFSQQGPR 60
SSPASDPNAKRRGRPPGSGKKKQFEALGSWGIAFTPHILTVKAGEDVASKIMAFSQQGPR
Sbjct: 1 SSPASDPNAKRRGRPPGSGKKKQFEALGSWGIAFTPHILTVKAGEDVASKIMAFSQQGPR 60
Query: 61 TVCILSANGAISNVTLRQPATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVAL 120
TVCILSANGAISNVTLRQPATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVAL
Sbjct: 61 TVCILSANGAISNVTLRQPATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVAL 120
Query: 121 AGSDGRVLGGCVAGMLMAATPVQVVVASFIAEGKKSKPVETRKVEPMSAPPQMATYVPAP 180
AGSDGRVLGGCVAGMLMAATPVQVVVASFIAEGKKSKPVETRKVEPMSAPPQMATYVPAP
Sbjct: 121 AGSDGRVLGGCVAGMLMAATPVQVVVASFIAEGKKSKPVETRKVEPMSAPPQMATYVPAP 180
Query: 181 VAXXXXXXXXXXXXXXXXXXINHSGMPYNHSGXXXXXXXXXXMPPAYASGGWSLSAHHQN 240
VA INHSGMPYNHSG MPPAYASGGWSLSAHHQN
Sbjct: 181 VASPPSEGTSSGSSDDSGSPINHSGMPYNHSGQQQQHQQHQHMPPAYASGGWSLSAHHQN 240
Query: 241 RHDSDMKMMSN 251
RHDSDMKMMSN
Sbjct: 241 RHDSDMKMMSN 251
>Os04g0589900 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 379
Score = 277 bits (708), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 156/249 (62%), Positives = 179/249 (71%), Gaps = 12/249 (4%)
Query: 5 SDPNAKRRGRPPGSGKKKQFEALGSWGIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCI 64
S+P+ KRRGRPPGSGKKKQ +ALGS G +FTPHI+TVK EDVASKIMAFSQQGPRT CI
Sbjct: 141 SNPDGKRRGRPPGSGKKKQLDALGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCI 200
Query: 65 LSANGAISNVTLRQPATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSD 124
+SANGA+ TLRQPATSGG+VTYEG F+I+SLSGSFLLAEDGDTRSRTGGLSVALAGSD
Sbjct: 201 ISANGALCTATLRQPATSGGIVTYEGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSD 260
Query: 125 GRVLGGCVAGMLMAATPVQVVVASFIAEGKKSKPVETRKVEPMSAPP--QMATYVPAPVA 182
GR++GGCVAGMLMAATPVQVVV SFIAEGKK K E K EP SAP A + A A
Sbjct: 261 GRIVGGCVAGMLMAATPVQVVVGSFIAEGKKGK-EEHLKREPTSAPTPNHAAGFGAATAA 319
Query: 183 XXXXXXXXXXXXXXXXXXINHSGMPYNHSGXXXXXXXXXXMPPAYASGGWSLSAHHQNRH 242
+ +G +N+SG M +YA WSLS +Q R+
Sbjct: 320 SPPSDGSSSDHSDDPGSPMGPNGSTFNNSG--------HPMHSSYAPVSWSLSG-NQGRY 370
Query: 243 DSDMKMMSN 251
D D+KMM++
Sbjct: 371 DPDLKMMTD 379
>Os09g0491708 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 359
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 118/177 (66%), Positives = 136/177 (76%), Gaps = 6/177 (3%)
Query: 2 SPASDPNAKRRGRPPGSGKKKQFEA-----LGSWGIAFTPHILTVKAGEDVASKIMAFSQ 56
S A P AK+RGRP GS KK + +GS G FTPH++ VKAGEDV++KIM+FSQ
Sbjct: 136 SSAPPPGAKKRGRPKGSTNKKHVPSFGIGDIGSAGAGFTPHVIFVKAGEDVSAKIMSFSQ 195
Query: 57 QGPRTVCILSANGAISNVTLRQPATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGL 116
G R VC+LSANGAISNVTLRQ ATSGG VTYEGRFEI+SLSGSFLL+E+G RSRTGGL
Sbjct: 196 HGTRGVCVLSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSENGGHRSRTGGL 255
Query: 117 SVALAGSDGRVLGGCVAGMLMAATPVQVVVASFIAEGKKSKPVETRKVEPMSAPPQM 173
SV+LAG DGRVLGG VAG+L AA+PVQ+VV SF EGKK P +PMSAP +M
Sbjct: 256 SVSLAGPDGRVLGGGVAGLLTAASPVQIVVGSFNTEGKKG-PKLHAPSDPMSAPLKM 311
>Os08g0512400 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 292
Score = 196 bits (497), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 111/161 (68%), Positives = 133/161 (82%), Gaps = 1/161 (0%)
Query: 10 KRRGRPPGSGKKKQFEALGSWGIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSANG 69
K+RGRP GS K + +A+GS G+ FTPH++TV AGEDV++KIM+F+Q G R VC+LSANG
Sbjct: 80 KKRGRPKGSTNKPRIDAVGSAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVCVLSANG 139
Query: 70 AISNVTLRQPATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLG 129
AISNVTLRQ ATSGG VTYEGRFEI+SLSGSFLL + G RSRTGGLSV+LAG DGR+LG
Sbjct: 140 AISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLTDHGGQRSRTGGLSVSLAGPDGRLLG 199
Query: 130 GCVAGMLMAATPVQVVVASFIAEGKKSKPVETRKVEPMSAP 170
G VAG+L+AATPVQ+VV SF +EGKK +P + EP SAP
Sbjct: 200 GGVAGLLIAATPVQIVVGSFNSEGKK-EPKQHAHSEPASAP 239
>Os02g0824300 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 394
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 92/167 (55%), Positives = 120/167 (71%), Gaps = 6/167 (3%)
Query: 10 KRRGRPPGSGKKKQFEALGSW-----GIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCI 64
+ RGRPPGSGK +Q +LG W G FTPH++ + GEDVA++IM+FSQQGPR VCI
Sbjct: 181 RGRGRPPGSGKMQQLASLGKWFLGSVGTGFTPHVIIISPGEDVAARIMSFSQQGPRAVCI 240
Query: 65 LSANGAISNVTLRQPATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSD 124
+SA GA+S TL Q + SGG+VTYEGRFEI+ LSGS+L+ E+G +R+R+GGL +AL G D
Sbjct: 241 ISATGAVSTATLHQDSNSGGVVTYEGRFEILCLSGSYLVIEEGGSRTRSGGLCIALCGPD 300
Query: 125 GRVLGGCVAGMLMAATPVQVVVASFIAEG-KKSKPVETRKVEPMSAP 170
RV+GG V G+L AA VQV+V SF+ G KK+K ++ E P
Sbjct: 301 HRVIGGSVGGVLTAAGTVQVIVGSFMYGGTKKNKAKAEQETENNEEP 347
>Os02g0125200 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 388
Score = 172 bits (437), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 89/146 (60%), Positives = 109/146 (74%), Gaps = 9/146 (6%)
Query: 31 GIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSANGAISNVTLRQPATSGGLVTYEG 90
G FTPHI+ V AGEDV K+++FSQQGPR +CILSANG ISNVTLRQ T GG VTYEG
Sbjct: 169 GANFTPHIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQQDTLGGTVTYEG 228
Query: 91 RFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLGGCVAGMLMAATPVQVVVASFI 150
RFE++SLSGSF + G TRSR+GG+SV+LA +DGRV+GG VAG+L+AA+PVQVVV SF+
Sbjct: 229 RFELLSLSGSFTPTDSGGTRSRSGGMSVSLAATDGRVIGGGVAGLLVAASPVQVVVGSFL 288
Query: 151 A-----EGKKSKPVETRKVEPMSAPP 171
+ KPV +E + PP
Sbjct: 289 PSYQLDQNATKKPV----IEITTVPP 310
>Os11g0149100 Protein of unknown function DUF296 domain containing protein
Length = 366
Score = 171 bits (432), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 94/155 (60%), Positives = 118/155 (76%), Gaps = 6/155 (3%)
Query: 1 SSPASDPNAKRRGRPPGSGKKKQFEALGSW-----GIAFTPHILTVKAGEDVASKIMAFS 55
S AS + +RRGRP GSG+++ LG W G +FTPH++ V GEDVA +IM+FS
Sbjct: 99 SEHASLSSGRRRGRPKGSGRRQILATLGEWYALSAGGSFTPHVIIVGTGEDVAGRIMSFS 158
Query: 56 QQGPRTVCILSANGAISNVTLRQPATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGG 115
Q+GPR++CILSANG ISNV L QP +SG TYEGRFEI+ L+GSF +AE+G R RTGG
Sbjct: 159 QKGPRSICILSANGTISNVALSQPGSSGSTFTYEGRFEILQLTGSFTMAEEGG-RRRTGG 217
Query: 116 LSVALAGSDGRVLGGCVAGMLMAATPVQVVVASFI 150
LSV+LAG DGRV+GG VAGML AA+P+QV+V SF+
Sbjct: 218 LSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGSFL 252
>Os08g0118000 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 372
Score = 158 bits (400), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 92/162 (56%), Positives = 120/162 (74%), Gaps = 8/162 (4%)
Query: 23 QFEALG-----SWGIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSANGAISNVTLR 77
F+++G S G FTPHI+TV GEDV K+++FSQQGPR +CILSANG ISNVTLR
Sbjct: 152 HFDSIGEMVACSAGANFTPHIITVAPGEDVTMKVISFSQQGPRAICILSANGVISNVTLR 211
Query: 78 QPATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLGGCVAGMLM 137
QP +SGG +TYEGRFE++SLSGSF+ E+ TRSR+GG+SV+LA DGRV+GG VAG+L+
Sbjct: 212 QPDSSGGTLTYEGRFELLSLSGSFMPTENSGTRSRSGGMSVSLASPDGRVVGGGVAGLLV 271
Query: 138 AATPVQVVVASFIAEGKKSKPVETRKVEPMSAPPQMATYVPA 179
AA+PVQ+VV SF+ + + + +VE A P +A PA
Sbjct: 272 AASPVQIVVGSFLPSYQMEQKNKKPRVE---AAPALAQTPPA 310
>Os12g0147000 Protein of unknown function DUF296 domain containing protein
Length = 387
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 103/134 (76%), Gaps = 6/134 (4%)
Query: 27 LGSW-----GIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSANGAISNVTLRQPAT 81
LG W G +FTPH++ V GEDVA++IM+FSQ+GPR+VCIL+ANG ISNV L QP +
Sbjct: 136 LGEWYALSAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGS 195
Query: 82 SGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLGGCVAGMLMAATP 141
SG +YEG FEI+ L+GSF +AE+G R RTGGLSV+LAG DGRV+GG VAGML AA+P
Sbjct: 196 SGSTFSYEGCFEILQLTGSFTIAEEG-VRRRTGGLSVSLAGPDGRVVGGVVAGMLRAASP 254
Query: 142 VQVVVASFIAEGKK 155
+QV+V SF+ K
Sbjct: 255 IQVIVGSFLPNNLK 268
>Os06g0326000 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 378
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 112/154 (72%), Gaps = 9/154 (5%)
Query: 10 KRRGRPPGSGKKKQFE-------ALGSWGIAFTPHILTVKAGEDVASKIMAFSQQGPRTV 62
K+RGRPPGSG K+Q A GS I P ++TV+ GEDV S++M+F++ G V
Sbjct: 169 KKRGRPPGSGNKQQQRPQHKKAAAPGSSVIGLKPSVITVQVGEDVVSRVMSFTKNG-WAV 227
Query: 63 CILSANGAISNVTLRQPATSGGL-VTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVALA 121
C+LSANGA+SN+TLRQ +SG V YEG FEI+SLSGS+LL+E SR GGLSV+LA
Sbjct: 228 CVLSANGAVSNMTLRQAGSSGATTVNYEGHFEILSLSGSYLLSESVGLSSRAGGLSVSLA 287
Query: 122 GSDGRVLGGCVAGMLMAATPVQVVVASFIAEGKK 155
G DGRVLGG VAG L AATPVQVV+ SF+A+ KK
Sbjct: 288 GPDGRVLGGGVAGPLNAATPVQVVIGSFLADVKK 321
>Os04g0683900 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 419
Score = 127 bits (320), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 97/169 (57%), Gaps = 25/169 (14%)
Query: 10 KRRGRPPGSGKKKQFEA----------LGSWGIAFTPHILTVKAGEDVASKIMAFSQQGP 59
KRRGRPPG+GKK+Q + GS G +FTPHI+T EDVA KI+AF+
Sbjct: 184 KRRGRPPGTGKKQQLSSPVKLSGGNAFSGSAGTSFTPHIITASPSEDVAGKIVAFANHSS 243
Query: 60 RTVCILSANGAISNVTLRQPATSG-----------GLVTYEGRFEIISLSGSFLLAEDGD 108
R VC+LSA G++S V LR PA YEG +EI+S+SG + L +G
Sbjct: 244 RAVCVLSATGSVSRVVLRHPADGAMSRVHASSHYKNPAIYEGLYEILSMSGCYNLMNEG- 302
Query: 109 TRSRTGGLSVALAGSDGRVLGGCVAGMLMAATPVQVVVASFIAEGKKSK 157
++ GLSV L + ++GG + G L+AA+ VQVV+ SF+ G K K
Sbjct: 303 ---QSDGLSVTLCSPERHIIGGVLGGALVAASTVQVVLGSFVQGGSKPK 348
>Os03g0105700 Protein of unknown function DUF296 domain containing protein
Length = 298
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 71/126 (56%), Gaps = 11/126 (8%)
Query: 28 GSWGIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSANGAISNVTLRQPATSGGLVT 87
G +G PH+L + AGE++ KI A S+ R +C+LS GA+ TL S G+ +
Sbjct: 97 GQFG-GLQPHLLQIDAGEEIIPKITALSKSNGRVICVLSVLGAVQEATL---LLSSGVTS 152
Query: 88 Y-EGRFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLGGCVAGMLMAATPVQVVV 146
Y +G EII L GS L D G L V LA D V+GG + G L AATPVQVVV
Sbjct: 153 YHKGPLEIIRLFGSILTPND------QGCLRVTLASGDSSVIGGVITGPLKAATPVQVVV 206
Query: 147 ASFIAE 152
ASF ++
Sbjct: 207 ASFYSD 212
>Os02g0448000 Protein of unknown function DUF296 domain containing protein
Length = 316
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 91/157 (57%), Gaps = 5/157 (3%)
Query: 10 KRRGRPPGSGKKKQFEALGSWGIAFT--PHILTVKAGEDVASKIMAFSQQGPRTVCILSA 67
+ RGRP GS K + + + A T H++ V G D++ I F+++ R VC+LS
Sbjct: 98 RPRGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSG 157
Query: 68 NGAISNVTLRQPATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRV 127
G ++NVTLRQPA+ G +V GRFEI+SLSGSFL GL+V LAG G+V
Sbjct: 158 AGTVTNVTLRQPASQGAVVALHGRFEILSLSGSFLPPP---APPEATGLTVYLAGGQGQV 214
Query: 128 LGGCVAGMLMAATPVQVVVASFIAEGKKSKPVETRKV 164
+GG V G L AA PV ++ ASF + P+E ++
Sbjct: 215 VGGSVVGALTAAGPVVIMAASFANAVYERLPLEDDEL 251
>Os02g0713700 Protein of unknown function DUF296 domain containing protein
Length = 336
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/120 (44%), Positives = 72/120 (60%), Gaps = 6/120 (5%)
Query: 33 AFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSANGAISNVTLRQPATS--GGLV-TYE 89
A H+L V G DV + ++++ R VC+LS GA+ NV LRQP S G +V T
Sbjct: 125 ALHSHVLEVAGGADVVDCVAEYARRRGRGVCVLSGGGAVVNVALRQPGASPPGSMVATLR 184
Query: 90 GRFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLGGCVAGMLMAATPVQVVVASF 149
GRFEI+SL+G+ L S GL+V L+G G+V+GG V G L+AA PV ++ ASF
Sbjct: 185 GRFEILSLTGTVLPPPAPPGAS---GLTVFLSGGQGQVIGGSVVGPLVAAGPVVLMAASF 241
>Os09g0464300
Length = 334
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 77/140 (55%), Gaps = 13/140 (9%)
Query: 10 KRRGRPPGSGKKKQFEAL----GSWGIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCIL 65
KRRGRPPGS K + + A PH++ + G DVA + FS + +C+L
Sbjct: 83 KRRGRPPGSKNKPKPPVVITREAEPAAAMRPHVIEIPGGRDVAEALARFSSRRNLGICVL 142
Query: 66 SANGAISNVTLRQPA-----TSGGLVTYEGRFEIISLSGSFL----LAEDGDTRSRTGGL 116
+ GA++NV+LR P+ ++ + + GR+EI+SLS +FL + GL
Sbjct: 143 AGTGAVANVSLRHPSPGVPGSAPAAIVFHGRYEILSLSATFLPPAMSSVAPQAAVAAAGL 202
Query: 117 SVALAGSDGRVLGGCVAGML 136
S++LAG G+++GG VAG L
Sbjct: 203 SISLAGPHGQIVGGAVAGPL 222
>Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 266
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 73/113 (64%), Gaps = 3/113 (2%)
Query: 37 HILTVKAGEDVASKIMAFSQQGPRTVCILSANGAISNVTLRQPATSGGLVTYEGRFEIIS 96
H++ V G DVA I FS++ R VC+LS G ++NV LRQP+ G +V GRFEI+S
Sbjct: 88 HVMEVAGGADVADAIAQFSRRRQRGVCVLSGAGTVANVALRQPSAPGAVVALHGRFEILS 147
Query: 97 LSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLGGCVAGMLMAATPVQVVVASF 149
L+G+FL G + GL+V LAG G+V+GG V G L+AA PV V+ ++F
Sbjct: 148 LTGTFL---PGPAPPGSTGLTVYLAGGQGQVVGGSVVGSLIAAGPVMVIASTF 197
>Os04g0590200 Protein of unknown function DUF296 domain containing protein
Length = 305
Score = 84.3 bits (207), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/145 (46%), Positives = 90/145 (62%), Gaps = 10/145 (6%)
Query: 10 KRRGRPPGSGKKKQFEALGSWGIAFT--PHILTVKAGEDVASKIMAFSQQGPRTVCILSA 67
+ RGRPPGS K + + + A T HIL V +G DV + ++++ R VC+LS
Sbjct: 83 RPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGCDVFECVSTYARRRQRGVCVLSG 142
Query: 68 NGAISNVTLRQP-ATSGGLVTYEGRFEIISLSGSFL--LAEDGDTRSRTGGLSVALAGSD 124
+G ++NVTLRQP A +G +V+ GRFEI+SLSGSFL A G T L++ LAG
Sbjct: 143 SGVVTNVTLRQPSAPAGAVVSLHGRFEILSLSGSFLPPPAPPGATS-----LTIFLAGGQ 197
Query: 125 GRVLGGCVAGMLMAATPVQVVVASF 149
G+V+GG V G L AA PV V+ ASF
Sbjct: 198 GQVVGGNVVGALYAAGPVIVIAASF 222
>Os08g0563200 Protein of unknown function DUF296 domain containing protein
Length = 235
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/147 (40%), Positives = 84/147 (57%), Gaps = 8/147 (5%)
Query: 33 AFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSANGAISNVTLRQPATSGGLVTYEGRF 92
A H++ V G DVA I F+++ R VC+LS G +++V LRQPA +V GRF
Sbjct: 61 ALRSHVMEVAGGADVAESIAHFARRRQRGVCVLSGAGTVTDVALRQPAAPSAVVALRGRF 120
Query: 93 EIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLGGCVAGMLMAATPVQVVVASFIAE 152
EI+SL+G+FL G + GL+V LAG G+V+GG V G L AA PV V+ ++F
Sbjct: 121 EILSLTGTFL---PGPAPPGSTGLTVYLAGGQGQVVGGSVVGTLTAAGPVMVIASTFANA 177
Query: 153 GKKSKPVETRKVEP-----MSAPPQMA 174
+ P++ + E M+ PP MA
Sbjct: 178 TYERLPLDQEEEEAAAGGMMAPPPLMA 204
>Os06g0136900 Protein of unknown function DUF296 domain containing protein
Length = 328
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 12/166 (7%)
Query: 10 KRRGRPPGSGKKKQFEALGSW--GIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSA 67
+ RGRP GS K + + + A H+L V +G D+ + F+++ VC+LSA
Sbjct: 112 RPRGRPAGSKNKPKPPVIITRDSASALRAHVLEVASGCDLVDSVATFARRRQVGVCVLSA 171
Query: 68 NGAISNVTLRQP-ATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGR 126
GA++NV++RQP A G +V GRF+I+SLSGSFL + + GL+V ++G G+
Sbjct: 172 TGAVTNVSVRQPGAGPGAVVNLTGRFDILSLSGSFLPPPAPPSAT---GLTVYVSGGQGQ 228
Query: 127 VLGGCVAGMLMAATPVQVVVASFIAEGKKSKPVETRKVEPMSAPPQ 172
V+GG VAG L+A PV ++ ASF + P+E + PPQ
Sbjct: 229 VVGGTVAGPLIAVGPVVIMAASFGNAAYERLPLEDDE------PPQ 268
>Os03g0270000 Protein of unknown function DUF296 domain containing protein
Length = 258
Score = 81.6 bits (200), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/120 (46%), Positives = 77/120 (64%), Gaps = 8/120 (6%)
Query: 33 AFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSANGAISNVTLRQPATSG-GLVTYEGR 91
A H+L + +G D+ I FS++ R V +LS +GA++NVTLRQPA +G V GR
Sbjct: 71 AMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTGAAAVALRGR 130
Query: 92 FEIISLSGSFL--LAEDGDTRSRTGGLSVALAGSDGRVLGGCVAGMLMAATPVQVVVASF 149
FEI+S+SG+FL A G T GL+V LAG G+V+GG V G L+A+ PV V+ A+F
Sbjct: 131 FEILSMSGAFLPAPAPPGAT-----GLAVYLAGGQGQVVGGSVMGELIASGPVMVIAATF 185
>Os08g0159700 Protein of unknown function DUF296 domain containing protein
Length = 289
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 61/101 (60%), Gaps = 8/101 (7%)
Query: 10 KRRGRPPGSGKKKQFEALGSW--GIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSA 67
+ RGRPPGS K + + + A HIL V AG DV + A++++ R VC+LSA
Sbjct: 64 RPRGRPPGSKNKPKPPVIITRESANALRAHILEVAAGCDVFEALTAYARRRQRGVCVLSA 123
Query: 68 NGAISNVTLRQPAT------SGGLVTYEGRFEIISLSGSFL 102
G ++NVTLRQP + S + T GRFEI+SL+GSFL
Sbjct: 124 AGTVANVTLRQPQSAQPGPASPAVATLHGRFEILSLAGSFL 164
>Os06g0326900 Protein of unknown function DUF296 domain containing protein
Length = 322
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 86/148 (58%), Gaps = 8/148 (5%)
Query: 7 PNAKRRGRPPGSGKKKQFEALGSWGI--AFTPHILTVKAGEDVASKIMAFSQQGPRTVCI 64
P + RGRP GS K + + + AF H+L V AG D+ + F+++ R V +
Sbjct: 81 PMRRPRGRPLGSKNKPKPPIIVTRDSPNAFHSHVLEVAAGTDIVECVCEFARRRGRGVSV 140
Query: 65 LSANGAISNVTLRQPATS--GGLV-TYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVALA 121
LS GA++NV LRQP S G LV T G+FEI+SL+G+ L GL+V L+
Sbjct: 141 LSGGGAVANVALRQPGASPPGSLVATMRGQFEILSLTGTVLPPP---APPSASGLTVFLS 197
Query: 122 GSDGRVLGGCVAGMLMAATPVQVVVASF 149
G G+V+GG VAG L+AA PV ++ ASF
Sbjct: 198 GGQGQVVGGSVAGQLIAAGPVFLMAASF 225
>Os08g0478466 Protein of unknown function DUF296 domain containing protein
Length = 324
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 22/149 (14%)
Query: 10 KRRGRPPGSGKKKQ---------FEALGSWGIAFTPHILTVKAGEDVASKIMAFSQQGPR 60
+RRGRPPGS K + A + A H+L + G DVA + ++++
Sbjct: 68 RRRGRPPGSKNKPKPPVVVTREAAAAEPAAAAAMRSHVLEIPGGGDVAGALAGYARRRGL 127
Query: 61 TVCILSANGAISNVTLRQPATS-----------GGLVTYEGRFEIISLSGSFLLAEDGDT 109
+C+L+ GA++NV+LR P S +V + GR+EI+S+S +FL
Sbjct: 128 GICVLAGTGAVANVSLRHPLPSGAAAEIGGGAAAAVVVFHGRYEILSISATFLPPAMAAA 187
Query: 110 RSRT--GGLSVALAGSDGRVLGGCVAGML 136
R GGLS++LAG G++ GG VAG L
Sbjct: 188 APRAALGGLSISLAGPHGQIFGGAVAGPL 216
>Os07g0235200 Protein of unknown function DUF296 domain containing protein
Length = 189
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 66/114 (57%), Gaps = 12/114 (10%)
Query: 49 SKIMAFSQQGPRTVCILSANGAISNVTLRQPATSGGLVTYEGRFEIISLSGSFLLAED-- 106
+ I F+++ R +C+LS A+++V LRQPA G +V GRFEI+SL+G+FL
Sbjct: 31 TSIAHFARRQRRGICVLSRADAVTDVALRQPAAPGAVVALRGRFEILSLTGTFLPGPGPP 90
Query: 107 GDTRSRTGGLSVALAGSDGRVLGGCVAGMLMAATPVQVVVASFIAEGKKSKPVE 160
G TR L+V LAG G+V+ G L AA PV V+ ++F + P++
Sbjct: 91 GSTR-----LTVYLAGGQGQVV-----GTLTAAGPVMVIASTFANATYERLPLD 134
>Os01g0953801 Protein of unknown function DUF296 domain containing protein
Length = 265
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 86/153 (56%), Gaps = 5/153 (3%)
Query: 2 SPASD---PNAKRRGRPPGSGKKKQFEALGSWG--IAFTPHILTVKAGEDVASKIMAFSQ 56
+PA D P K RGRP GS K + + + A P +L + AG +VA+ + AF++
Sbjct: 17 APALDLPSPPRKPRGRPLGSKNKPKPPVVVTRESEAAMRPVVLELGAGCEVAAAVAAFAR 76
Query: 57 QGPRTVCILSANGAISNVTLRQPATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGL 116
+ V +L G ++ VTLR P + V GRFE++SLSG+ L + G+ +
Sbjct: 77 RRRVGVSVLCGRGTVAAVTLRLPTSPPAAVKLHGRFEVLSLSGTVLPSAAGEGAAPPPPF 136
Query: 117 SVALAGSDGRVLGGCVAGMLMAATPVQVVVASF 149
SV+LAG+ G+V+GG +AG + A + VV A+F
Sbjct: 137 SVSLAGAGGQVIGGTLAGEMTTADGLVVVAATF 169
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,705,432
Number of extensions: 345651
Number of successful extensions: 846
Number of sequences better than 1.0e-10: 27
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 27
Length of query: 251
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 153
Effective length of database: 11,918,829
Effective search space: 1823580837
Effective search space used: 1823580837
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 155 (64.3 bits)