Os10g0572900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF296 domain containing protein.
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Os10g0572900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF296 domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.41 | 0.53 | 6.41 | 0.577 | 2.84 | 2.99 | 0.14 | 0.711 | 0.558 | 20.6 | 1.682 | 750 | -- | -- |
| 127.36 | 0.526 | 6.4 | 0.609 | 3 | 3.26 | -0.0624 | -- | 0.571 | 20.7 | 1.834 | 779 | -- | -- |
| 127.16 | 0.525 | 6.4 | 0.577 | 2.97 | 3.21 | -- | 0.684 | 0.58 | 20.6 | 1.77 | 765 | -- | -- |
| 127.26 | 0.525 | 6.4 | 0.607 | 2.95 | 3.16 | -- | -- | 0.568 | 20.8 | 1.882 | 786 | -- | -- |
| 189.03 | 0.64 | 6.29 | 0.741 | -- | 3.11 | -- | 1.08 | 0.718 | -- | 1.684 | 1695 | -- | -- |
| 144.28 | 0.563 | 6.38 | 0.373 | 1.83 | -- | 0.0214 | -- | 0.452 | 0.25 | -- | -- | -- | -- |
| 144.28 | 0.563 | 6.38 | 0.372 | 1.83 | -- | -- | -- | 0.452 | 0.249 | -- | -- | -- | -- |
| 190.88 | 0.646 | 6.34 | 0.455 | -- | 1.23 | -- | -- | 0.508 | -- | 2.097 | 1686 | -- | -- |
| 136.28 | 0.544 | 6.39 | -- | 2.65 | 2.67 | -- | -- | 0.525 | 21.1 | 2.376 | 783 | -- | -- |
| 354.88 | 0.88 | 6.34 | 0.432 | -- | -- | -- | -- | 0.48 | -- | -- | -- | -- | -- |
| 147.93 | 0.569 | 6.39 | -- | 1.83 | -- | -- | -- | 0.411 | 0.26 | -- | -- | -- | -- |
| 195.96 | 0.654 | 6.35 | -- | -- | 1.23 | -- | -- | 0.46 | -- | 2.293 | 1703 | -- | -- |
| 359.81 | 0.885 | 6.35 | -- | -- | -- | -- | -- | 0.433 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.56 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 5 | 116.61 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 6 | 116.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 13 | 117.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 14 | 117.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 78 | 123.26 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 5 |
| 90 | 123.96 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 108 | 125.47 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 112 | 125.71 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 116 | 125.90 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 121 | 126.15 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 8 |
| 144 | 126.71 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 16 |
| 148 | 126.77 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 149 | 126.79 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 151 | 126.80 | humidity | 60 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 153 | 126.80 | humidity | 60 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 155 | 126.80 | radiation | 20 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 206 | 126.80 | humidity | 60 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 208 | 126.80 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 210 | 126.80 | radiation | 20 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 262 | 126.81 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 267 | 126.89 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 17 |
| 280 | 127.08 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 17 |
| 300 | 127.20 | radiation | 1 | 720 | < th | dose dependent | sin | 23 | NA |
| 302 | 127.23 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 315 | 127.35 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 20 |
| 322 | 127.42 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 23 |
| 327 | 127.48 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 19 |
| 328 | 127.49 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 332 | 127.51 | radiation | 1 | 720 | > th | dose independent | rect. | 6 | 13 |
| 362 | 127.67 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 8 |
| 373 | 127.72 | humidity | 90 | 720 | < th | dose independent | rect. | 22 | 3 |
| 376 | 127.73 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 384 | 127.79 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 386 | 127.80 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 388 | 127.81 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 392 | 127.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 393 | 127.83 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 18 |
| 449 | 128.02 | humidity | 80 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 451 | 128.02 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 455 | 128.03 | humidity | 50 | 720 | > th | dose dependent | rect. | 18 | 12 |
| 469 | 128.09 | humidity | 90 | 720 | > th | dose independent | rect. | 20 | 5 |
| 491 | 128.19 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 5 |
| 530 | 128.28 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 23 |
| 562 | 128.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 16 |
| 571 | 128.36 | humidity | 90 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 599 | 128.40 | humidity | 90 | 270 | > th | dose dependent | rect. | 12 | 20 |
| 607 | 128.42 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 23 |
| 630 | 128.50 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 23 |
| 656 | 128.58 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 657 | 128.59 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 12 |
| 670 | 128.63 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 671 | 128.64 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 673 | 128.64 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 15 |
| 683 | 128.64 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 18 |
| 729 | 128.68 | radiation | 1 | 720 | < th | dose independent | sin | 23 | NA |
| 742 | 128.71 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 755 | 128.73 | humidity | 70 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 757 | 128.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 820 | 128.89 | humidity | 50 | 720 | > th | dose dependent | rect. | 19 | 2 |
| 824 | 128.90 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 23 |
| 825 | 128.91 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 23 |
| 826 | 128.92 | humidity | 80 | 1440 | < th | dose independent | sin | 1 | NA |
| 839 | 128.98 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 23 | 7 |
| 869 | 129.06 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 23 |
| 902 | 129.11 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 908 | 129.11 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 935 | 129.16 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 23 |
| 943 | 129.18 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 20 | 13 |
| 948 | 129.18 | humidity | 90 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 975 | 129.24 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 17 |