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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0125200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HMG-I and HMG-Y, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.79 (0.0269) R2 : 0.00762
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.106 (0.0566) R2dN8 : 0.00984 R2N8 : 0.00762
σ : 0.506
deviance : 117.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.84 0.479 3.78 0.0198 0.279 0.633 1.22 0.179 -0.0513 18.1 65.99 951 -- --
103.87 0.475 3.78 0.0376 0.266 0.628 1.18 -- -0.052 18 64.66 968 -- --
106.95 0.482 3.78 0.0532 0.159 0.649 -- 0.0763 -0.0506 17 65.55 1183 -- --
106.63 0.481 3.77 0.0266 0.206 0.543 -- -- -0.0624 15.2 59.38 1234 -- --
108.42 0.485 3.77 -0.000274 -- 0.667 -- 0.193 -0.0416 -- 64.92 1202 -- --
111.46 0.495 3.79 0.00928 0.284 -- 0.735 -- -0.102 15.7 -- -- -- --
112.6 0.497 3.79 0.0211 0.293 -- -- -- -0.0977 14.5 -- -- -- --
108.47 0.485 3.77 0.0227 -- 0.666 -- -- -0.0401 -- 64.33 1195 -- --
106.57 0.481 3.78 -- 0.212 0.579 -- -- -0.0455 14.8 64.59 1282 -- --
117.67 0.507 3.79 0.00861 -- -- -- -- -0.105 -- -- -- -- --
112.62 0.496 3.79 -- 0.293 -- -- -- -0.1 14.5 -- -- -- --
108.48 0.485 3.77 -- -- 0.67 -- -- -0.0403 -- 64.71 1195 -- --
117.67 0.506 3.79 -- -- -- -- -- -0.106 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 102.93 precipitation 0.1 720 < th dose independent rect. 17 14
2 102.93 precipitation 0.1 720 < th dose dependent rect. 17 14
3 103.08 wind 5.0 90 > th dose independent rect. 2 2
4 103.09 wind 5.0 90 > th dose dependent rect. 2 2
5 103.29 precipitation 0.1 30 > th dose independent rect. 3 15
10 103.33 precipitation 0.1 30 > th dose dependent rect. 3 15
17 103.65 precipitation 0.1 720 > th dose independent rect. 20 22
21 103.82 precipitation 0.1 720 > th dose dependent rect. 20 22
23 103.89 humidity 50.0 720 > th dose dependent rect. 14 20
35 104.03 radiation 30.0 720 < th dose dependent rect. 16 1
43 104.10 humidity 90.0 720 < th dose dependent rect. 19 1
46 104.13 humidity 90.0 720 < th dose independent rect. 21 1
47 104.13 humidity 90.0 720 < th dose dependent rect. 19 3
49 104.15 wind 5.0 10 > th dose dependent rect. 3 5
50 104.16 precipitation 0.1 720 < th dose independent sin 14 NA
51 104.16 precipitation 0.1 720 < th dose dependent sin 14 NA
53 104.19 wind 3.0 10 > th dose independent rect. 4 1
55 104.19 wind 3.0 10 > th dose dependent rect. 4 1
66 104.24 precipitation 0.1 720 < th dose independent sin 1 NA
67 104.24 precipitation 0.1 720 < th dose dependent sin 1 NA
83 104.31 precipitation 0.1 720 > th dose dependent rect. 2 17
85 104.34 wind 3.0 10 > th dose independent rect. 2 3
87 104.35 wind 7.0 43200 > th dose independent rect. 17 3
90 104.36 humidity 90.0 720 < th dose independent rect. 4 18
95 104.37 precipitation 0.1 720 < th dose independent rect. 8 23
96 104.37 precipitation 0.1 720 < th dose dependent rect. 8 23
98 104.38 humidity 70.0 720 > th dose dependent rect. 5 23
99 104.40 precipitation 0.1 720 < th dose independent rect. 17 23
100 104.40 precipitation 0.1 720 < th dose dependent rect. 17 23
104 104.42 precipitation 0.1 90 > th dose independent rect. 2 2
118 104.44 precipitation 0.1 90 > th dose dependent rect. 2 2
136 104.47 precipitation 0.1 90 > th dose dependent sin 3 NA
138 104.48 precipitation 0.1 720 < th dose independent rect. 15 16
141 104.48 precipitation 0.1 720 < th dose dependent rect. 15 16
145 104.50 precipitation 0.1 720 < th dose independent rect. 1 22
147 104.50 precipitation 0.1 720 < th dose dependent rect. 1 22
148 104.51 humidity 90.0 720 < th dose dependent rect. 17 14
149 104.52 wind 7.0 43200 > th dose independent rect. 16 7
157 104.54 wind 7.0 43200 < th dose independent rect. 17 3
161 104.55 temperature 30.0 720 < th dose independent rect. 16 1
167 104.57 wind 7.0 43200 < th dose independent rect. 16 7
186 104.62 wind 7.0 43200 < th dose independent rect. 17 5
201 104.65 wind 7.0 43200 > th dose dependent rect. 16 6
217 104.68 precipitation 0.1 720 < th dose independent rect. 19 10
218 104.68 wind 7.0 43200 > th dose dependent rect. 17 3
221 104.68 precipitation 0.1 720 < th dose dependent rect. 19 10
231 104.70 humidity 90.0 720 < th dose independent rect. 8 15
244 104.72 humidity 60.0 720 > th dose dependent rect. 15 13
253 104.74 humidity 90.0 720 < th dose dependent sin 13 NA
259 104.75 precipitation 0.1 720 > th dose independent rect. 17 23
261 104.75 humidity 70.0 720 > th dose dependent rect. 3 23
281 104.79 precipitation 0.1 720 > th dose independent rect. 5 23
282 104.79 humidity 50.0 720 > th dose dependent sin 13 NA
295 104.81 precipitation 0.1 720 < th dose independent rect. 4 17
298 104.81 precipitation 0.1 720 < th dose dependent rect. 4 17
309 104.83 radiation 40.0 720 < th dose dependent rect. 16 9
313 104.84 humidity 70.0 720 > th dose dependent no NA NA
318 104.84 humidity 70.0 720 > th dose dependent rect. 22 23
322 104.86 radiation 20.0 720 < th dose independent rect. 16 1
325 104.86 precipitation 0.1 720 > th dose independent rect. 2 16
356 104.91 precipitation 0.1 720 > th dose independent rect. 14 17
357 104.91 humidity 80.0 1440 < th dose independent rect. 23 20
358 104.91 precipitation 0.1 720 > th dose independent rect. 14 23
361 104.91 precipitation 0.1 90 > th dose dependent rect. 3 11
368 104.92 precipitation 0.1 720 > th dose dependent sin 1 NA
385 104.95 precipitation 0.1 30 > th dose independent rect. 3 11
396 104.95 precipitation 0.1 720 > th dose independent rect. 9 21
404 104.96 humidity 80.0 1440 > th dose independent rect. 23 20
405 104.96 precipitation 0.1 720 > th dose independent rect. 2 22
418 104.97 precipitation 0.1 720 > th dose independent rect. 14 21
432 104.97 humidity 90.0 720 < th dose dependent rect. 15 16
438 104.98 precipitation 0.1 720 > th dose independent rect. 12 19
445 104.98 precipitation 0.1 720 < th dose independent rect. 10 23
448 104.98 humidity 70.0 720 > th dose dependent rect. 1 23
449 104.98 precipitation 0.1 720 < th dose dependent rect. 10 23
488 105.00 precipitation 0.1 30 > th dose dependent rect. 3 5
507 105.01 precipitation 0.1 720 > th dose independent no NA NA
508 105.01 precipitation 0.1 720 < th dose independent no NA NA
519 105.01 precipitation 0.1 720 < th dose dependent no NA NA
542 105.02 precipitation 0.1 720 > th dose dependent rect. 17 23
546 105.03 humidity 80.0 1440 > th dose independent rect. 3 16
554 105.03 humidity 90.0 720 < th dose dependent rect. 11 20
557 105.04 wind 7.0 43200 < th dose independent rect. 19 1
585 105.06 humidity 80.0 1440 < th dose independent rect. 3 16
586 105.06 humidity 80.0 720 < th dose independent rect. 10 22
592 105.07 humidity 90.0 720 < th dose independent rect. 17 5
604 105.08 precipitation 0.1 30 > th dose independent sin 2 NA
606 105.08 precipitation 0.1 720 < th dose independent rect. 9 14
612 105.08 precipitation 0.1 720 < th dose dependent rect. 9 14
661 105.13 precipitation 0.1 720 < th dose independent rect. 17 6
671 105.13 precipitation 0.1 720 < th dose dependent rect. 17 6
690 105.14 humidity 80.0 720 > th dose dependent rect. 3 20
700 105.15 wind 5.0 270 > th dose dependent rect. 24 4
739 105.17 precipitation 0.1 720 > th dose dependent rect. 5 23
759 105.19 wind 3.0 4320 < th dose dependent rect. 3 1
769 105.20 humidity 90.0 720 < th dose independent sin 22 NA
789 105.20 precipitation 0.1 720 > th dose dependent rect. 8 23
793 105.21 temperature 15.0 720 > th dose independent rect. 17 14
797 105.21 precipitation 0.1 720 > th dose dependent no NA NA
811 105.21 precipitation 0.1 720 > th dose dependent rect. 12 23
812 105.21 precipitation 0.1 720 > th dose dependent rect. 14 23
830 105.23 precipitation 0.1 30 < th dose independent sin 8 NA
831 105.23 humidity 80.0 720 < th dose independent rect. 17 3
838 105.23 humidity 80.0 720 > th dose independent rect. 14 19
842 105.23 precipitation 0.1 30 < th dose dependent sin 8 NA
843 105.23 wind 5.0 43200 > th dose dependent rect. 19 1
844 105.23 humidity 90.0 720 < th dose dependent rect. 15 8
862 105.24 humidity 80.0 1440 > th dose dependent rect. 10 6
890 105.26 temperature 15.0 720 > th dose independent rect. 19 10
900 105.26 wind 1.0 90 > th dose dependent rect. 1 10
902 105.26 humidity 90.0 720 < th dose dependent rect. 11 13
906 105.26 precipitation 0.1 720 > th dose dependent rect. 12 20
933 105.28 precipitation 0.1 720 > th dose independent rect. 5 13
964 105.29 humidity 80.0 720 > th dose independent rect. 5 23