BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0125200 Os02g0125200|Os02g0125200
(388 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0125200 HMG-I and HMG-Y, DNA-binding domain containing... 405 e-113
Os08g0118000 HMG-I and HMG-Y, DNA-binding domain containing... 230 2e-60
Os10g0572900 Protein of unknown function DUF296 domain cont... 130 2e-30
Os08g0512400 HMG-I and HMG-Y, DNA-binding domain containing... 125 5e-29
Os11g0149100 Protein of unknown function DUF296 domain cont... 122 6e-28
Os09g0491708 HMG-I and HMG-Y, DNA-binding domain containing... 119 3e-27
Os04g0589900 HMG-I and HMG-Y, DNA-binding domain containing... 119 3e-27
Os12g0147000 Protein of unknown function DUF296 domain cont... 116 2e-26
Os02g0824300 HMG-I and HMG-Y, DNA-binding domain containing... 113 2e-25
Os06g0326000 HMG-I and HMG-Y, DNA-binding domain containing... 82 7e-16
Os02g0448000 Protein of unknown function DUF296 domain cont... 72 6e-13
Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing... 70 4e-12
Os04g0683900 HMG-I and HMG-Y, DNA-binding domain containing... 69 6e-12
Os04g0590200 Protein of unknown function DUF296 domain cont... 68 1e-11
Os08g0159700 Protein of unknown function DUF296 domain cont... 65 9e-11
>Os02g0125200 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 388
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/308 (70%), Positives = 217/308 (70%)
Query: 81 SLLRPLKATPISASVPDDSGGGQYTPAAAVGAVMKRGRGRPVGFXXXXXXXXXXXXXXXX 140
SLLRPLKATPISASVPDDSGGGQYTPAAAVGAVMKRGRGRPVGF
Sbjct: 81 SLLRPLKATPISASVPDDSGGGQYTPAAAVGAVMKRGRGRPVGFVSRASPVSVAVTAATS 140
Query: 141 XXXXXXXXXXXHTQTPLGPLGELVACASGANFTPHIINVAAGEDVNMKVISFSQQGPRAI 200
HTQTPLGPLGELVACASGANFTPHIINVAAGEDVNMKVISFSQQGPRAI
Sbjct: 141 TAAVVVSSPATHTQTPLGPLGELVACASGANFTPHIINVAAGEDVNMKVISFSQQGPRAI 200
Query: 201 CILSANGVISNVTLRQQDTLGGTVTYEGRFELLSLSGSFTPTDXXXXXXXXXXXXXXLAA 260
CILSANGVISNVTLRQQDTLGGTVTYEGRFELLSLSGSFTPTD LAA
Sbjct: 201 CILSANGVISNVTLRQQDTLGGTVTYEGRFELLSLSGSFTPTDSGGTRSRSGGMSVSLAA 260
Query: 261 TDGRVIXXXXXXXXXXXSPVQVVVGSFLPSYQLDQNATKKXXXXXXXXXXXXXAIGFTIS 320
TDGRVI SPVQVVVGSFLPSYQLDQNATKK AIGFTIS
Sbjct: 261 TDGRVIGGGVAGLLVAASPVQVVVGSFLPSYQLDQNATKKPVIEITTVPPPPPAIGFTIS 320
Query: 321 SGDPMEDSYSGSHGQHRSGXXXXXXXXXXXXXXXXFRVENWTXXXXXXXXXXRTKTPSSE 380
SGDPMEDSYSGSHGQHRSG FRVENWT RTKTPSSE
Sbjct: 321 SGDPMEDSYSGSHGQHRSGAAAATTTTAKANSTSAFRVENWTPPAPPAAEAARTKTPSSE 380
Query: 381 AKVPVPGA 388
AKVPVPGA
Sbjct: 381 AKVPVPGA 388
>Os08g0118000 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 372
Score = 230 bits (586), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/259 (52%), Positives = 156/259 (60%), Gaps = 15/259 (5%)
Query: 81 SLLRPLKATPISASVP-DDSGGGQYTPAAAVGAVMKRGRGRPVGFXXXXXXXXXXXXXXX 139
SL+RPL ATPISASVP S G YTPA+AVGA MKRGRGRP+ F
Sbjct: 84 SLIRPLNATPISASVPMAASAVGPYTPASAVGAAMKRGRGRPLDFASTAKLHHHHQHQHH 143
Query: 140 XXXXXXXXXXXXHTQTPLGPLGELVACASGANFTPHIINVAAGEDVNMKVISFSQQGPRA 199
H + +GE+VAC++GANFTPHII VA GEDV MKVISFSQQGPRA
Sbjct: 144 HQQQQFGF----HFDS----IGEMVACSAGANFTPHIITVAPGEDVTMKVISFSQQGPRA 195
Query: 200 ICILSANGVISNVTLRQQDTLGGTVTYEGRFELLSLSGSFTPTDXXXXXXXXXXXXXXLA 259
ICILSANGVISNVTLRQ D+ GGT+TYEGRFELLSLSGSF PT+ LA
Sbjct: 196 ICILSANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGSFMPTENSGTRSRSGGMSVSLA 255
Query: 260 ATDGRVIXXXXXXXXXXXSPVQVVVGSFLPSYQLDQNATKKXXXXXXXXXXXXXAIGFTI 319
+ DGRV+ SPVQ+VVGSFLPSYQ++Q K A+ I
Sbjct: 256 SPDGRVVGGGVAGLLVAASPVQIVVGSFLPSYQMEQKNKKPRVEAAPALAQTPPAV--PI 313
Query: 320 SSGDPMEDSYSGSHGQHRS 338
SS D++S GQH S
Sbjct: 314 SS----TDTHSSEQGQHSS 328
>Os10g0572900 Protein of unknown function DUF296 domain containing protein
Length = 251
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 78/120 (65%)
Query: 169 GANFTPHIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQQDTLGGTVTYEG 228
G FTPHI+ V AGEDV K+++FSQQGPR +CILSANG ISNVTLRQ T GG VTYEG
Sbjct: 31 GIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSANGAISNVTLRQPATSGGLVTYEG 90
Query: 229 RFELLSLSGSFTPTDXXXXXXXXXXXXXXLAATDGRVIXXXXXXXXXXXSPVQVVVGSFL 288
RFE++SLSGSF + LA +DGRV+ +PVQVVV SF+
Sbjct: 91 RFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLGGCVAGMLMAATPVQVVVASFI 150
>Os08g0512400 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 292
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 67/121 (55%), Positives = 81/121 (66%)
Query: 167 ASGANFTPHIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQQDTLGGTVTY 226
++G FTPH+I V AGEDV+ K++SF+Q G RA+C+LSANG ISNVTLRQ T GGTVTY
Sbjct: 99 SAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVCVLSANGAISNVTLRQTATSGGTVTY 158
Query: 227 EGRFELLSLSGSFTPTDXXXXXXXXXXXXXXLAATDGRVIXXXXXXXXXXXSPVQVVVGS 286
EGRFE+LSLSGSF TD LA DGR++ +PVQ+VVGS
Sbjct: 159 EGRFEILSLSGSFLLTDHGGQRSRTGGLSVSLAGPDGRLLGGGVAGLLIAATPVQIVVGS 218
Query: 287 F 287
F
Sbjct: 219 F 219
>Os11g0149100 Protein of unknown function DUF296 domain containing protein
Length = 366
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 85/134 (63%), Gaps = 1/134 (0%)
Query: 157 LGPLGELVACASGANFTPHIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQ 216
L LGE A ++G +FTPH+I V GEDV +++SFSQ+GPR+ICILSANG ISNV L Q
Sbjct: 122 LATLGEWYALSAGGSFTPHVIIVGTGEDVAGRIMSFSQKGPRSICILSANGTISNVALSQ 181
Query: 217 QDTLGGTVTYEGRFELLSLSGSFTPTDXXXXXXXXXXXXXXLAATDGRVIXXXXXXXXXX 276
+ G T TYEGRFE+L L+GSFT + LA DGRV+
Sbjct: 182 PGSSGSTFTYEGRFEILQLTGSFTMAE-EGGRRRTGGLSVSLAGPDGRVVGGVVAGMLRA 240
Query: 277 XSPVQVVVGSFLPS 290
SP+QV+VGSFLP+
Sbjct: 241 ASPIQVIVGSFLPN 254
>Os09g0491708 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 359
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/121 (56%), Positives = 81/121 (66%)
Query: 167 ASGANFTPHIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQQDTLGGTVTY 226
++GA FTPH+I V AGEDV+ K++SFSQ G R +C+LSANG ISNVTLRQ T GGTVTY
Sbjct: 168 SAGAGFTPHVIFVKAGEDVSAKIMSFSQHGTRGVCVLSANGAISNVTLRQAATSGGTVTY 227
Query: 227 EGRFELLSLSGSFTPTDXXXXXXXXXXXXXXLAATDGRVIXXXXXXXXXXXSPVQVVVGS 286
EGRFE+LSLSGSF ++ LA DGRV+ SPVQ+VVGS
Sbjct: 228 EGRFEILSLSGSFLLSENGGHRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQIVVGS 287
Query: 287 F 287
F
Sbjct: 288 F 288
>Os04g0589900 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 379
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 75/122 (61%)
Query: 167 ASGANFTPHIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQQDTLGGTVTY 226
+SG +FTPHII V EDV K+++FSQQGPR CI+SANG + TLRQ T GG VTY
Sbjct: 165 SSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIVTY 224
Query: 227 EGRFELLSLSGSFTPTDXXXXXXXXXXXXXXLAATDGRVIXXXXXXXXXXXSPVQVVVGS 286
EG F++LSLSGSF + LA +DGR++ +PVQVVVGS
Sbjct: 225 EGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGS 284
Query: 287 FL 288
F+
Sbjct: 285 FI 286
>Os12g0147000 Protein of unknown function DUF296 domain containing protein
Length = 387
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/143 (46%), Positives = 89/143 (62%), Gaps = 2/143 (1%)
Query: 157 LGPLGELVACASGANFTPHIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQ 216
L LGE A ++G +FTPH+I VA GEDV +++SFSQ+GPR++CIL+ANG ISNV L Q
Sbjct: 133 LANLGEWYALSAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQ 192
Query: 217 QDTLGGTVTYEGRFELLSLSGSFTPTDXXXXXXXXXXXXXXLAATDGRVIXXXXXXXXXX 276
+ G T +YEG FE+L L+GSFT + LA DGRV+
Sbjct: 193 PGSSGSTFSYEGCFEILQLTGSFTIAE-EGVRRRTGGLSVSLAGPDGRVVGGVVAGMLRA 251
Query: 277 XSPVQVVVGSFLPSYQLDQNATK 299
SP+QV+VGSFLP+ L Q+ +
Sbjct: 252 ASPIQVIVGSFLPN-NLKQHQRR 273
>Os02g0824300 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 394
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/132 (43%), Positives = 74/132 (56%)
Query: 157 LGPLGELVACASGANFTPHIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQ 216
L LG+ + G FTPH+I ++ GEDV +++SFSQQGPRA+CI+SA G +S TL Q
Sbjct: 195 LASLGKWFLGSVGTGFTPHVIIISPGEDVAARIMSFSQQGPRAVCIISATGAVSTATLHQ 254
Query: 217 QDTLGGTVTYEGRFELLSLSGSFTPTDXXXXXXXXXXXXXXLAATDGRVIXXXXXXXXXX 276
GG VTYEGRFE+L LSGS+ + L D RVI
Sbjct: 255 DSNSGGVVTYEGRFEILCLSGSYLVIEEGGSRTRSGGLCIALCGPDHRVIGGSVGGVLTA 314
Query: 277 XSPVQVVVGSFL 288
VQV+VGSF+
Sbjct: 315 AGTVQVIVGSFM 326
>Os06g0326000 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 378
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 172 FTPHIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQQDTLGGT-VTYEGRF 230
P +I V GEDV +V+SF++ G A+C+LSANG +SN+TLRQ + G T V YEG F
Sbjct: 200 LKPSVITVQVGEDVVSRVMSFTKNG-WAVCVLSANGAVSNMTLRQAGSSGATTVNYEGHF 258
Query: 231 ELLSLSGSFTPTDXXXXXXXXXXXXXXLAATDGRVIXXXXXXXXXXXSPVQVVVGSFL 288
E+LSLSGS+ ++ LA DGRV+ +PVQVV+GSFL
Sbjct: 259 EILSLSGSYLLSESVGLSSRAGGLSVSLAGPDGRVLGGGVAGPLNAATPVQVVIGSFL 316
>Os02g0448000 Protein of unknown function DUF296 domain containing protein
Length = 316
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 46/67 (68%)
Query: 175 HIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQQDTLGGTVTYEGRFELLS 234
H++ VA G D++ + +F+++ R +C+LS G ++NVTLRQ + G V GRFE+LS
Sbjct: 127 HVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVTLRQPASQGAVVALHGRFEILS 186
Query: 235 LSGSFTP 241
LSGSF P
Sbjct: 187 LSGSFLP 193
>Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 266
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 42/67 (62%)
Query: 175 HIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQQDTLGGTVTYEGRFELLS 234
H++ VA G DV + FS++ R +C+LS G ++NV LRQ G V GRFE+LS
Sbjct: 88 HVMEVAGGADVADAIAQFSRRRQRGVCVLSGAGTVANVALRQPSAPGAVVALHGRFEILS 147
Query: 235 LSGSFTP 241
L+G+F P
Sbjct: 148 LTGTFLP 154
>Os04g0683900 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 419
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 15/139 (10%)
Query: 161 GELVACASGANFTPHIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQ---- 216
G + ++G +FTPHII + EDV K+++F+ RA+C+LSA G +S V LR
Sbjct: 207 GNAFSGSAGTSFTPHIITASPSEDVAGKIVAFANHSSRAVCVLSATGSVSRVVLRHPADG 266
Query: 217 -------QDTLGGTVTYEGRFELLSLSGSFTPTDXXXXXXXXXXXXXXLAATDGRVIXXX 269
YEG +E+LS+SG + + L + + +I
Sbjct: 267 AMSRVHASSHYKNPAIYEGLYEILSMSGCYNLMN----EGQSDGLSVTLCSPERHIIGGV 322
Query: 270 XXXXXXXXSPVQVVVGSFL 288
S VQVV+GSF+
Sbjct: 323 LGGALVAASTVQVVLGSFV 341
>Os04g0590200 Protein of unknown function DUF296 domain containing protein
Length = 305
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 175 HIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQQDT-LGGTVTYEGRFELL 233
HI+ V +G DV V +++++ R +C+LS +GV++NVTLRQ G V+ GRFE+L
Sbjct: 112 HILEVGSGCDVFECVSTYARRRQRGVCVLSGSGVVTNVTLRQPSAPAGAVVSLHGRFEIL 171
Query: 234 SLSGSFTP 241
SLSGSF P
Sbjct: 172 SLSGSFLP 179
>Os08g0159700 Protein of unknown function DUF296 domain containing protein
Length = 289
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 6/73 (8%)
Query: 175 HIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQQDTL------GGTVTYEG 228
HI+ VAAG DV + +++++ R +C+LSA G ++NVTLRQ + T G
Sbjct: 93 HILEVAAGCDVFEALTAYARRRQRGVCVLSAAGTVANVTLRQPQSAQPGPASPAVATLHG 152
Query: 229 RFELLSLSGSFTP 241
RFE+LSL+GSF P
Sbjct: 153 RFEILSLAGSFLP 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,885,471
Number of extensions: 242301
Number of successful extensions: 510
Number of sequences better than 1.0e-10: 15
Number of HSP's gapped: 504
Number of HSP's successfully gapped: 15
Length of query: 388
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 285
Effective length of database: 11,657,759
Effective search space: 3322461315
Effective search space used: 3322461315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 157 (65.1 bits)