Os08g0118000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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Os08g0118000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 187.48 | 0.643 | 9.88 | 1.83 | 1.99 | 1.32 | -0.0973 | 0.283 | 1.07 | 23.4 | 71.01 | 1353 | -- | -- |
| 187.64 | 0.638 | 9.87 | 1.87 | 1.99 | 1.34 | -0.113 | -- | 1.09 | 23.4 | 71.57 | 1348 | -- | -- |
| 187.12 | 0.637 | 9.88 | 1.81 | 1.99 | 1.34 | -- | 0.469 | 1.05 | 23.4 | 72 | 1351 | -- | -- |
| 187.57 | 0.638 | 9.88 | 1.87 | 1.98 | 1.36 | -- | -- | 1.06 | 23.4 | 72.28 | 1352 | -- | -- |
| 351.51 | 0.878 | 9.87 | 1.76 | -- | 1.11 | -- | -0.646 | 0.915 | -- | 73.78 | 1578 | -- | -- |
| 254.45 | 0.748 | 9.92 | 1.6 | 1.88 | -- | -0.341 | -- | 0.879 | 23.2 | -- | -- | -- | -- |
| 254.94 | 0.748 | 9.92 | 1.61 | 1.89 | -- | -- | -- | 0.881 | 23.2 | -- | -- | -- | -- |
| 353.94 | 0.88 | 9.87 | 1.74 | -- | 1.1 | -- | -- | 0.908 | -- | 73.78 | 1578 | -- | -- |
| 265.7 | 0.759 | 9.93 | -- | 2.3 | 1.77 | -- | -- | 0.921 | 23.1 | 84 | 2368 | -- | -- |
| 477.51 | 1.02 | 9.87 | 1.66 | -- | -- | -- | -- | 0.898 | -- | -- | -- | -- | -- |
| 323.25 | 0.841 | 9.96 | -- | 1.9 | -- | -- | -- | 0.702 | 23.3 | -- | -- | -- | -- |
| 422.82 | 0.961 | 9.93 | -- | -- | 1.07 | -- | -- | 0.664 | -- | 79 | 1585 | -- | -- |
| 549.86 | 1.09 | 9.92 | -- | -- | -- | -- | -- | 0.714 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 9 | 186.94 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 10 | 187.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 5 | 11 |
| 13 | 187.50 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 3 |
| 16 | 187.53 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 26 | 187.90 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 20 |
| 37 | 188.51 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 51 | 188.97 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 12 |
| 58 | 189.00 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 74 | 189.35 | humidity | 60 | 1440 | > th | dose dependent | sin | 1 | NA |
| 85 | 189.44 | humidity | 60 | 1440 | > th | dose dependent | rect. | 3 | 17 |
| 92 | 189.56 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 97 | 189.60 | humidity | 70 | 1440 | > th | dose dependent | rect. | 6 | 10 |
| 118 | 189.95 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 137 | 190.17 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 145 | 190.24 | humidity | 70 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 146 | 190.24 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 198 | 190.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 15 |
| 247 | 190.54 | humidity | 70 | 1440 | > th | dose independent | rect. | 6 | 23 |
| 261 | 190.56 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 329 | 190.99 | humidity | 70 | 1440 | > th | dose independent | sin | 20 | NA |
| 332 | 190.99 | humidity | 60 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 356 | 191.11 | humidity | 50 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 363 | 191.13 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 367 | 191.14 | humidity | 50 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 388 | 191.19 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 420 | 191.34 | humidity | 50 | 1440 | > th | dose dependent | no | NA | NA |
| 468 | 191.63 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 21 |
| 472 | 191.65 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 483 | 191.65 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 497 | 191.73 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 548 | 191.94 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 576 | 192.06 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 20 |
| 587 | 192.10 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 613 | 192.22 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 620 | 192.24 | humidity | 90 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 621 | 192.25 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 646 | 192.33 | humidity | 90 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 700 | 192.53 | humidity | 90 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 723 | 192.61 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |
| 748 | 192.71 | humidity | 90 | 1440 | < th | dose dependent | sin | 3 | NA |
| 759 | 192.73 | humidity | 90 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 796 | 192.92 | humidity | 70 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 829 | 192.99 | humidity | 70 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 840 | 193.02 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 1 |
| 917 | 193.27 | humidity | 70 | 1440 | < th | dose independent | sin | 19 | NA |