FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os11g0149100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF296 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.59 (0.0422) R2 : 0.501
β1 : 2.46 (0.155) R2dD : 0.288 R2D : 0.175
β2 : 0.97 (0.136) R2dC : 0.104 R2C : -0.0941
β3 : 1.01 (0.132) R2dE : 0.121 R2E : -0.0509
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.17 (0.09) R2dN8 : 0.249 R2N8 : 0.115
σ : 0.787
deviance : 285.27
__
_____
C
peak time of C : 24
E
wheather : temperature
threshold : 24.5
memory length : 108
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 8.75
open length of G : 6.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
280.45 0.787 5.58 2.47 0.951 0.966 -0.649 0.705 1.18 24 24.59 94 8.87 6.22
281.32 0.781 5.59 2.42 0.936 0.978 -0.957 -- 1.17 0.049 24.5 106 8.79 6.15
281.41 0.781 5.58 2.51 0.988 0.991 -- 1.14 1.19 23.9 24.4 96 8.82 6.23
285.27 0.787 5.59 2.46 0.97 1.01 -- -- 1.17 24 24.5 108 8.75 6.2
313.73 0.825 5.54 2.63 -- 0.422 -- 1.21 1.22 -- 25.4 92 9.23 6.22
315.28 0.832 5.57 2.52 0.273 -- -1.22 -- 1.21 23.4 -- -- -- --
320.93 0.839 5.57 2.57 0.308 -- -- -- 1.22 21.8 -- -- -- --
313.1 0.824 5.57 2.55 -- 0.496 -- -- 1.19 -- 25.5 95 9.39 5.58
441.86 0.979 5.63 -- 1.21 1.25 -- -- 0.997 0.283 24.1 92 8.73 6.37
326.59 0.844 5.56 2.58 -- -- -- -- 1.22 -- -- -- -- --
495.58 1.04 5.63 -- 0.319 -- -- -- 0.933 22.4 -- -- -- --
399.36 0.931 5.73 -- -- 1.57 -- -- 0.63 -- 23.6 8154 9.68 3.87
501.81 1.05 5.62 -- -- -- -- -- 0.933 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 281.58 temperature 25.0 90 > th dose independent rect. 9 6
2 283.24 temperature 25.0 270 > th dose independent rect. 9 4
15 287.11 temperature 15.0 90 > th dose dependent rect. 9 6
32 288.85 temperature 20.0 10 > th dose dependent rect. 9 6
37 289.23 temperature 20.0 270 > th dose dependent rect. 9 3
53 290.08 wind 1.0 10 > th dose independent rect. 20 10
64 290.94 wind 7.0 90 < th dose independent rect. 9 6
68 291.02 wind 5.0 270 < th dose independent rect. 7 7
77 291.28 wind 7.0 10 < th dose independent rect. 9 17
88 291.65 wind 7.0 10 < th dose independent rect. 9 6
119 292.55 wind 7.0 270 < th dose independent rect. 17 22
121 292.62 wind 7.0 270 < th dose independent rect. 6 23
123 292.66 temperature 10.0 10 > th dose dependent rect. 9 17
131 292.92 wind 9.0 90 < th dose dependent rect. 9 6
139 292.99 wind 7.0 270 < th dose independent rect. 9 14
142 293.04 radiation 20.0 90 < th dose independent rect. 14 21
143 293.06 radiation 30.0 90 < th dose independent rect. 15 18
158 293.46 wind 9.0 270 < th dose dependent rect. 7 7
171 293.73 temperature 30.0 10 < th dose dependent rect. 2 18
178 293.79 temperature 20.0 90 > th dose dependent rect. 20 19
202 294.15 precipitation 0.1 14400 > th dose dependent rect. 22 8
204 294.19 wind 1.0 10 > th dose independent rect. 9 21
209 294.23 wind 9.0 270 < th dose dependent rect. 9 4
211 294.26 wind 1.0 90 > th dose dependent rect. 15 5
215 294.32 temperature 20.0 10 > th dose dependent rect. 21 18
235 294.56 temperature 30.0 10 < th dose dependent rect. 5 13
236 294.57 wind 7.0 10 < th dose independent rect. 12 14
239 294.58 radiation 40.0 90 < th dose dependent rect. 15 18
242 294.61 wind 5.0 270 < th dose independent rect. 7 19
249 294.71 temperature 25.0 270 < th dose independent rect. 2 17
250 294.72 precipitation 0.1 14400 < th dose independent rect. 22 8
251 294.72 precipitation 0.1 14400 < th dose dependent rect. 22 8
253 294.73 wind 7.0 10 < th dose independent rect. 9 21
258 294.76 humidity 90.0 90 < th dose independent rect. 9 6
261 294.80 temperature 15.0 90 > th dose independent rect. 9 6
274 294.90 temperature 30.0 30 < th dose dependent rect. 2 16
277 294.92 precipitation 0.1 14400 > th dose independent rect. 22 8
284 295.03 radiation 40.0 90 < th dose dependent rect. 14 21
288 295.05 temperature 30.0 10 < th dose dependent sin 0 NA
306 295.19 temperature 10.0 270 > th dose dependent rect. 17 22
307 295.21 atmosphere 995.0 90 > th dose independent rect. 9 6
308 295.22 wind 5.0 270 > th dose dependent rect. 2 16
309 295.22 temperature 15.0 10 > th dose dependent rect. 9 20
312 295.25 temperature 30.0 10 < th dose dependent rect. 5 15
315 295.30 radiation 1.0 90 > th dose independent rect. 9 6
316 295.30 temperature 30.0 90 < th dose dependent rect. 4 15
322 295.34 atmosphere 1015.0 90 < th dose dependent rect. 9 6
331 295.41 temperature 15.0 270 > th dose dependent rect. 18 20
333 295.43 precipitation 0.1 90 < th dose independent rect. 9 6
334 295.43 precipitation 0.1 90 < th dose dependent rect. 9 6
343 295.46 precipitation 0.1 14400 > th dose dependent rect. 19 11
345 295.48 wind 1.0 10 > th dose independent rect. 21 18
352 295.51 wind 7.0 90 < th dose independent rect. 20 19
390 295.69 atmosphere 1005.0 14400 < th dose dependent rect. 20 1
394 295.71 radiation 20.0 4320 < th dose dependent rect. 21 8
408 295.79 wind 7.0 10 < th dose independent rect. 21 18
410 295.81 precipitation 0.1 14400 < th dose independent rect. 19 11
411 295.81 precipitation 0.1 14400 < th dose dependent rect. 19 11
415 295.84 atmosphere 1015.0 90 < th dose independent rect. 9 6
417 295.84 temperature 10.0 90 > th dose independent rect. 15 18
419 295.84 wind 9.0 30 < th dose dependent rect. 9 17
423 295.86 precipitation 0.1 14400 > th dose independent rect. 19 11
450 295.97 radiation 40.0 10 < th dose dependent rect. 15 18
463 296.04 temperature 15.0 10 > th dose dependent rect. 9 15
464 296.05 humidity 50.0 30 > th dose independent rect. 15 18
465 296.06 wind 5.0 270 < th dose independent rect. 9 2
486 296.16 precipitation 0.1 90 < th dose independent rect. 15 18
487 296.16 precipitation 0.1 90 < th dose dependent rect. 15 18
491 296.18 wind 7.0 720 < th dose independent rect. 1 14
509 296.23 radiation 1.0 10 > th dose independent rect. 9 7
512 296.23 wind 5.0 270 > th dose dependent rect. 9 9
522 296.26 wind 5.0 270 > th dose dependent rect. 11 7
534 296.33 humidity 90.0 10 < th dose independent rect. 9 6
538 296.34 atmosphere 995.0 10 > th dose independent rect. 9 7
542 296.36 radiation 1.0 90 < th dose dependent rect. 20 12
547 296.38 atmosphere 1000.0 14400 > th dose independent rect. 16 1
548 296.38 wind 1.0 10 > th dose independent rect. 18 12
571 296.46 wind 1.0 43200 > th dose independent rect. 5 1
574 296.47 radiation 20.0 270 < th dose independent rect. 15 2
575 296.47 temperature 25.0 90 > th dose independent rect. 9 14
599 296.51 temperature 25.0 10 < th dose independent rect. 5 14
626 296.57 wind 9.0 270 < th dose dependent rect. 9 13
638 296.61 humidity 50.0 10 > th dose independent rect. 9 6
645 296.62 temperature 10.0 1440 > th dose independent rect. 10 6
648 296.62 temperature 10.0 1440 > th dose independent rect. 16 18
668 296.66 wind 1.0 90 > th dose independent rect. 9 6
697 296.72 atmosphere 1015.0 270 < th dose independent rect. 18 8
703 296.74 wind 1.0 43200 < th dose dependent rect. 5 1
715 296.78 temperature 25.0 10 < th dose independent rect. 2 18
729 296.80 temperature 20.0 90 > th dose dependent rect. 3 12
733 296.82 precipitation 0.1 14400 > th dose independent rect. 16 14
767 296.90 precipitation 0.1 14400 < th dose independent rect. 16 14
769 296.90 precipitation 0.1 14400 < th dose dependent rect. 16 14
803 296.99 radiation 20.0 270 < th dose dependent rect. 2 16
814 297.02 wind 7.0 270 > th dose independent rect. 2 16
823 297.05 wind 9.0 270 < th dose dependent rect. 7 19
826 297.06 wind 7.0 270 > th dose independent rect. 11 7
843 297.10 atmosphere 1015.0 90 < th dose independent rect. 20 19
874 297.17 radiation 20.0 4320 < th dose dependent rect. 19 10
884 297.20 radiation 20.0 90 < th dose independent rect. 2 18
931 297.29 radiation 10.0 270 > th dose independent rect. 17 21