Os08g0512400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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Os08g0512400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.22 | 0.305 | 13 | 1.02 | 1.03 | 0.408 | 0.00828 | -0.337 | 0.443 | 20 | 3 | 7 | -- | -- |
| 46.54 | 0.32 | 13.1 | 0.97 | 0.88 | 0.266 | 0.14 | -- | 0.366 | 18.8 | 3 | 7 | -- | -- |
| 46.28 | 0.319 | 13.1 | 0.969 | 0.881 | 0.26 | -- | -0.213 | 0.366 | 18.8 | 3 | 7 | -- | -- |
| 45.99 | 0.318 | 13.1 | 0.978 | 0.872 | 0.298 | -- | -- | 0.363 | 18.6 | 1.91 | 9 | -- | -- |
| 83.02 | 0.427 | 13 | 0.957 | -- | 0.44 | -- | -0.228 | 0.351 | -- | 1.757 | 6 | -- | -- |
| 48.67 | 0.327 | 13.1 | 0.966 | 1.02 | -- | 0.00178 | -- | 0.346 | 19.9 | -- | -- | -- | -- |
| 48.67 | 0.327 | 13.1 | 0.966 | 1.02 | -- | -- | -- | 0.346 | 19.9 | -- | -- | -- | -- |
| 82.33 | 0.424 | 13 | 0.967 | -- | 0.451 | -- | -- | 0.342 | -- | 1.04 | 8 | -- | -- |
| 71.09 | 0.395 | 13.1 | -- | 0.868 | 0.276 | -- | -- | 0.26 | 18.8 | 3.049 | 14 | -- | -- |
| 105.7 | 0.48 | 13 | 0.954 | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
| 73.24 | 0.4 | 13.1 | -- | 1.02 | -- | -- | -- | 0.239 | 20 | -- | -- | -- | -- |
| 106.77 | 0.483 | 13.1 | -- | -- | 0.453 | -- | -- | 0.25 | -- | 2.325 | 11 | -- | -- |
| 129.73 | 0.532 | 13.1 | -- | -- | -- | -- | -- | 0.227 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.73 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 2 | 41.02 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 4 | 41.12 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 6 | 41.27 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 8 | 41.46 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 9 | 41.51 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 11 | 41.57 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 17 | 41.68 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 9 | 8 |
| 18 | 41.68 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 21 | 41.71 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 35 | 41.73 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 40 | 41.83 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 41 | 41.84 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 43 | 41.84 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 46 | 41.87 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 47 | 41.87 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 49 | 41.87 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 57 | 41.88 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 86 | 41.98 | radiation | 20.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 111 | 42.04 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 126 | 42.10 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 127 | 42.12 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 4 | 11 |
| 140 | 42.13 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 146 | 42.14 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 155 | 42.17 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 19 | 19 |
| 193 | 42.21 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 24 | 4 |
| 200 | 42.22 | radiation | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 225 | 42.22 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 19 |
| 235 | 42.22 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 4 | 21 |
| 236 | 42.22 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 315 | 42.27 | wind | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 347 | 42.32 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 350 | 42.34 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 354 | 42.35 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 24 | 4 |
| 371 | 42.40 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 2 | 12 |
| 372 | 42.40 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 24 | 14 |
| 381 | 42.40 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 382 | 42.40 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 387 | 42.41 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 388 | 42.41 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 4 | 10 |
| 413 | 42.42 | radiation | 20.0 | 1440 | < th | dose dependent | sin | 23 | NA |
| 419 | 42.43 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 24 | 16 |
| 504 | 42.51 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 528 | 42.53 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 535 | 42.53 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 9 | 21 |
| 580 | 42.55 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 707 | 42.63 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 764 | 42.66 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 771 | 42.66 | wind | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 794 | 42.67 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 18 | 21 |
| 861 | 42.70 | radiation | 1.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 868 | 42.70 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 20 | 19 |
| 880 | 42.71 | radiation | 20.0 | 1440 | < th | dose dependent | no | NA | NA |