BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0512400 Os08g0512400|AK067561
(292 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0512400 HMG-I and HMG-Y, DNA-binding domain containing... 506 e-143
Os09g0491708 HMG-I and HMG-Y, DNA-binding domain containing... 283 1e-76
Os04g0589900 HMG-I and HMG-Y, DNA-binding domain containing... 193 1e-49
Os10g0572900 Protein of unknown function DUF296 domain cont... 186 2e-47
Os08g0118000 HMG-I and HMG-Y, DNA-binding domain containing... 160 7e-40
Os02g0824300 HMG-I and HMG-Y, DNA-binding domain containing... 154 6e-38
Os02g0125200 HMG-I and HMG-Y, DNA-binding domain containing... 152 2e-37
Os11g0149100 Protein of unknown function DUF296 domain cont... 137 9e-33
Os12g0147000 Protein of unknown function DUF296 domain cont... 120 1e-27
Os06g0326000 HMG-I and HMG-Y, DNA-binding domain containing... 114 1e-25
Os04g0683900 HMG-I and HMG-Y, DNA-binding domain containing... 107 7e-24
Os02g0448000 Protein of unknown function DUF296 domain cont... 91 9e-19
Os04g0590200 Protein of unknown function DUF296 domain cont... 80 1e-15
Os08g0159700 Protein of unknown function DUF296 domain cont... 79 5e-15
Os06g0136900 Protein of unknown function DUF296 domain cont... 77 1e-14
Os09g0464300 76 2e-14
Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing... 72 5e-13
Os06g0326900 Protein of unknown function DUF296 domain cont... 70 2e-12
Os08g0563200 Protein of unknown function DUF296 domain cont... 69 4e-12
Os03g0270000 Protein of unknown function DUF296 domain cont... 66 2e-11
>Os08g0512400 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 292
Score = 506 bits (1302), Expect = e-143, Method: Compositional matrix adjust.
Identities = 259/292 (88%), Positives = 259/292 (88%)
Query: 1 ALIGGYEFPRLCVRVFGDTRNKRGRPRKYGPDGSMSLGLXXXXXXXXXXXXXQGVPGPFS 60
ALIGGYEFPRLCVRVFGDTRNKRGRPRKYGPDGSMSLGL QGVPGPFS
Sbjct: 1 ALIGGYEFPRLCVRVFGDTRNKRGRPRKYGPDGSMSLGLVTSPTAAASTPVAQGVPGPFS 60
Query: 61 PTQPKPPASFLSSGWPDGVKKRGRPKGSTNKPRIDAVGSAGVGFTPHVITVLAGEDVSAK 120
PTQPKPPASFLSSGWPDGVKKRGRPKGSTNKPRIDAVGSAGVGFTPHVITVLAGEDVSAK
Sbjct: 61 PTQPKPPASFLSSGWPDGVKKRGRPKGSTNKPRIDAVGSAGVGFTPHVITVLAGEDVSAK 120
Query: 121 IMSFAQHGNRAVCVLSANGAISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLTDHGGQR 180
IMSFAQHGNRAVCVLSANGAISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLTDHGGQR
Sbjct: 121 IMSFAQHGNRAVCVLSANGAISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLTDHGGQR 180
Query: 181 SRTGGLSVSXXXXXXXXXXXXXXXXXXXXTPVQIVVGSFNSEGKKEPKQHAHSEPASAPS 240
SRTGGLSVS TPVQIVVGSFNSEGKKEPKQHAHSEPASAPS
Sbjct: 181 SRTGGLSVSLAGPDGRLLGGGVAGLLIAATPVQIVVGSFNSEGKKEPKQHAHSEPASAPS 240
Query: 241 KAVPTAGMGPNSPPSRGTLSESSGGAGSPLHPGIAPPSSNSQPPFLSSMPWK 292
KAVPTAGMGPNSPPSRGTLSESSGGAGSPLHPGIAPPSSNSQPPFLSSMPWK
Sbjct: 241 KAVPTAGMGPNSPPSRGTLSESSGGAGSPLHPGIAPPSSNSQPPFLSSMPWK 292
>Os09g0491708 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 359
Score = 283 bits (723), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 175/279 (62%), Positives = 191/279 (68%), Gaps = 13/279 (4%)
Query: 19 TRNKRGRPRKYGPDGSMSLGLXXXXXXXXXXXXXQGVPGPFSPTQPKPPASFLSSGWPDG 78
+ KRGRPRKYGPDGSMSL L GPFSP +SS P G
Sbjct: 89 VKKKRGRPRKYGPDGSMSLALVPVSTAAVAAS------GPFSPAAAAKSPDAVSSAPPPG 142
Query: 79 VKKRGRPKGSTNKPR-----IDAVGSAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVC 133
KKRGRPKGSTNK I +GSAG GFTPHVI V AGEDVSAKIMSF+QHG R VC
Sbjct: 143 AKKRGRPKGSTNKKHVPSFGIGDIGSAGAGFTPHVIFVKAGEDVSAKIMSFSQHGTRGVC 202
Query: 134 VLSANGAISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLTDHGGQRSRTGGLSVSXXXX 193
VLSANGAISNVTLRQ ATSGGTVTYEGRFEILSLSGSFLL+++GG RSRTGGLSVS
Sbjct: 203 VLSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSENGGHRSRTGGLSVSLAGP 262
Query: 194 XXXXXXXXXXXXXXXXTPVQIVVGSFNSEGKKEPKQHAHSEPASAPSKAVPTAGMGPNSP 253
+PVQIVVGSFN+EGKK PK HA S+P SAP K VP +G GP+SP
Sbjct: 263 DGRVLGGGVAGLLTAASPVQIVVGSFNTEGKKGPKLHAPSDPMSAPLKMVPMSGTGPSSP 322
Query: 254 PSRGTLSESSGGAGSPLHPGIAPPSSNSQPPFLSSMPWK 292
PSRGTLSESSGG GSPL+ G+ +SN P L S+ WK
Sbjct: 323 PSRGTLSESSGGPGSPLNQGVT--ASNHGQPGLPSLSWK 359
>Os04g0589900 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 379
Score = 193 bits (491), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 109/222 (49%), Positives = 134/222 (60%), Gaps = 15/222 (6%)
Query: 19 TRNKRGRPRKYGPDGSMSLGLXXXXXXXXXXXXXQGVPGPFSPTQPKPPASFLSSGWPDG 78
+ KRGRPRKYGPDG++ LGL S+ PDG
Sbjct: 100 VKKKRGRPRKYGPDGNIGLGLKPAAAAGTEAGGPS--------------GGAGSNSNPDG 145
Query: 79 VKKRGRPKGSTNKPRIDAVGSAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVCVLSAN 138
K+RGRP GS K ++DA+GS+G FTPH+ITV EDV++KIM+F+Q G R C++SAN
Sbjct: 146 -KRRGRPPGSGKKKQLDALGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISAN 204
Query: 139 GAISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLTDHGGQRSRTGGLSVSXXXXXXXXX 198
GA+ TLRQ ATSGG VTYEG F+ILSLSGSFLL + G RSRTGGLSV+
Sbjct: 205 GALCTATLRQPATSGGIVTYEGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIV 264
Query: 199 XXXXXXXXXXXTPVQIVVGSFNSEGKKEPKQHAHSEPASAPS 240
TPVQ+VVGSF +EGKK ++H EP SAP+
Sbjct: 265 GGCVAGMLMAATPVQVVVGSFIAEGKKGKEEHLKREPTSAPT 306
>Os10g0572900 Protein of unknown function DUF296 domain containing protein
Length = 251
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 110/197 (55%), Positives = 133/197 (67%), Gaps = 2/197 (1%)
Query: 80 KKRGRPKGSTNKPRIDAVGSAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVCVLSANG 139
K+RGRP GS K + +A+GS G+ FTPH++TV AGEDV++KIM+F+Q G R VC+LSANG
Sbjct: 10 KRRGRPPGSGKKKQFEALGSWGIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSANG 69
Query: 140 AISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLTDHGGQRSRTGGLSVSXXXXXXXXXX 199
AISNVTLRQ ATSGG VTYEGRFEI+SLSGSFLL + G RSRTGGLSV+
Sbjct: 70 AISNVTLRQPATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLG 129
Query: 200 XXXXXXXXXXTPVQIVVGSFNSEGKK-EPKQHAHSEPASAPSKAVPTAGMGPNSPPSRGT 258
TPVQ+VV SF +EGKK +P + EP SAP + SPPS GT
Sbjct: 130 GCVAGMLMAATPVQVVVASFIAEGKKSKPVETRKVEPMSAPPQMATYVPAPVASPPSEGT 189
Query: 259 LSESSGGAGSPL-HPGI 274
S SS +GSP+ H G+
Sbjct: 190 SSGSSDDSGSPINHSGM 206
>Os08g0118000 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 372
Score = 160 bits (406), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 127/232 (54%), Gaps = 34/232 (14%)
Query: 21 NKRGRPRKYGPDGSMSLGLXXXXXXXXXXXXXQGVPGPFSPTQPKPPASFLSSGWPDGVK 80
KRGRPRKYGPDGS+ L VP S P PAS + + G
Sbjct: 71 KKRGRPRKYGPDGSLIRPLNATPISAS-------VPMAASAVGPYTPASAVGAAMKRG-- 121
Query: 81 KRGRPKGSTNKPRI-------------------DAVG-----SAGVGFTPHVITVLAGED 116
RGRP + ++ D++G SAG FTPH+ITV GED
Sbjct: 122 -RGRPLDFASTAKLHHHHQHQHHHQQQQFGFHFDSIGEMVACSAGANFTPHIITVAPGED 180
Query: 117 VSAKIMSFAQHGNRAVCVLSANGAISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLTDH 176
V+ K++SF+Q G RA+C+LSANG ISNVTLRQ +SGGT+TYEGRFE+LSLSGSF+ T++
Sbjct: 181 VTMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFELLSLSGSFMPTEN 240
Query: 177 GGQRSRTGGLSVSXXXXXXXXXXXXXXXXXXXXTPVQIVVGSFNSEGKKEPK 228
G RSR+GG+SVS +PVQIVVGSF + E K
Sbjct: 241 SGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQIVVGSFLPSYQMEQK 292
>Os02g0824300 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 394
Score = 154 bits (390), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 95/223 (42%), Positives = 123/223 (55%), Gaps = 7/223 (3%)
Query: 19 TRNKRGRPRKYGPDGSMSLGLXXXXXXXXXXXXXQG--VPGPFSPTQPKPPASFLSSGWP 76
+ KRGRPRKY PDG+++LGL G V P S + SG
Sbjct: 118 VKKKRGRPRKYKPDGAVTLGLSPSSSTPHSSTSAMGTMVTTPGSGFGSGAGSGGSGSGAL 177
Query: 77 DGVKKRGRPKGSTNKPRIDAVG-----SAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRA 131
+ RGRP GS ++ ++G S G GFTPHVI + GEDV+A+IMSF+Q G RA
Sbjct: 178 TEKRGRGRPPGSGKMQQLASLGKWFLGSVGTGFTPHVIIISPGEDVAARIMSFSQQGPRA 237
Query: 132 VCVLSANGAISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLTDHGGQRSRTGGLSVSXX 191
VC++SA GA+S TL Q + SGG VTYEGRFEIL LSGS+L+ + GG R+R+GGL ++
Sbjct: 238 VCIISATGAVSTATLHQDSNSGGVVTYEGRFEILCLSGSYLVIEEGGSRTRSGGLCIALC 297
Query: 192 XXXXXXXXXXXXXXXXXXTPVQIVVGSFNSEGKKEPKQHAHSE 234
VQ++VGSF G K+ K A E
Sbjct: 298 GPDHRVIGGSVGGVLTAAGTVQVIVGSFMYGGTKKNKAKAEQE 340
>Os02g0125200 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 388
Score = 152 bits (385), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/226 (43%), Positives = 116/226 (51%), Gaps = 25/226 (11%)
Query: 17 GDTRNKRGRPRKYGPDGSMSLGLXXXXXXXXXXXXXQGVPGPFSPTQPKPPASFLSSGWP 76
G+ + KRGRPRKYGPDGS+ L G G ++P G P
Sbjct: 64 GNGKRKRGRPRKYGPDGSLLRPLKATPISASVPDDSGG--GQYTPAAAVGAVMKRGRGRP 121
Query: 77 DGVKKRGRPKGSTNK----------------------PRIDAVGSA-GVGFTPHVITVLA 113
G R P P + V A G FTPH+I V A
Sbjct: 122 VGFVSRASPVSVAVTAATSTAAVVVSSPATHTQTPLGPLGELVACASGANFTPHIINVAA 181
Query: 114 GEDVSAKIMSFAQHGNRAVCVLSANGAISNVTLRQTATSGGTVTYEGRFEILSLSGSFLL 173
GEDV+ K++SF+Q G RA+C+LSANG ISNVTLRQ T GGTVTYEGRFE+LSLSGSF
Sbjct: 182 GEDVNMKVISFSQQGPRAICILSANGVISNVTLRQQDTLGGTVTYEGRFELLSLSGSFTP 241
Query: 174 TDHGGQRSRTGGLSVSXXXXXXXXXXXXXXXXXXXXTPVQIVVGSF 219
TD GG RSR+GG+SVS +PVQ+VVGSF
Sbjct: 242 TDSGGTRSRSGGMSVSLAATDGRVIGGGVAGLLVAASPVQVVVGSF 287
>Os11g0149100 Protein of unknown function DUF296 domain containing protein
Length = 366
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 78/154 (50%), Positives = 98/154 (63%), Gaps = 11/154 (7%)
Query: 71 LSSGWPDGVKKRGRPKGSTNKPRIDAVG-----SAGVGFTPHVITVLAGEDVSAKIMSFA 125
LSSG ++RGRPKGS + + +G SAG FTPHVI V GEDV+ +IMSF+
Sbjct: 104 LSSG-----RRRGRPKGSGRRQILATLGEWYALSAGGSFTPHVIIVGTGEDVAGRIMSFS 158
Query: 126 QHGNRAVCVLSANGAISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLTDHGGQRSRTGG 185
Q G R++C+LSANG ISNV L Q +SG T TYEGRFEIL L+GSF + + GG+R RTGG
Sbjct: 159 QKGPRSICILSANGTISNVALSQPGSSGSTFTYEGRFEILQLTGSFTMAEEGGRR-RTGG 217
Query: 186 LSVSXXXXXXXXXXXXXXXXXXXXTPVQIVVGSF 219
LSVS +P+Q++VGSF
Sbjct: 218 LSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGSF 251
>Os12g0147000 Protein of unknown function DUF296 domain containing protein
Length = 387
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 84/131 (64%), Gaps = 1/131 (0%)
Query: 99 SAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVCVLSANGAISNVTLRQTATSGGTVTY 158
SAG FTPHVI V GEDV+A+IMSF+Q G R+VC+L+ANG ISNV L Q +SG T +Y
Sbjct: 143 SAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGSSGSTFSY 202
Query: 159 EGRFEILSLSGSFLLTDHGGQRSRTGGLSVSXXXXXXXXXXXXXXXXXXXXTPVQIVVGS 218
EG FEIL L+GSF + + G +R RTGGLSVS +P+Q++VGS
Sbjct: 203 EGCFEILQLTGSFTIAEEGVRR-RTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGS 261
Query: 219 FNSEGKKEPKQ 229
F K+ ++
Sbjct: 262 FLPNNLKQHQR 272
>Os06g0326000 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 378
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 120/299 (40%), Positives = 150/299 (50%), Gaps = 37/299 (12%)
Query: 20 RNKRGRPRKYGPDGSMSLGLXXXXXXXXXXXXXQGVPGPFSPT----------------- 62
+ KRGRPRKY + P +PT
Sbjct: 91 KRKRGRPRKYAVTDVPLAVVPPSPPKAAAAAGASAAQSPATPTLPPGFSSGLAAYGGAAA 150
Query: 63 -QPKPPASFLSSGWPDGVKKRGRPKGSTNK-------PRIDAVGSAGVGFTPHVITVLAG 114
QP P + +SG KKRGRP GS NK + A GS+ +G P VITV G
Sbjct: 151 SQPAPRQAPPASGRVLPHKKRGRPPGSGNKQQQRPQHKKAAAPGSSVIGLKPSVITVQVG 210
Query: 115 EDVSAKIMSFAQHGNRAVCVLSANGAISNVTLRQTATSGG-TVTYEGRFEILSLSGSFLL 173
EDV +++MSF ++G AVCVLSANGA+SN+TLRQ +SG TV YEG FEILSLSGS+LL
Sbjct: 211 EDVVSRVMSFTKNG-WAVCVLSANGAVSNMTLRQAGSSGATTVNYEGHFEILSLSGSYLL 269
Query: 174 TDHGGQRSRTGGLSVSXXXXXXXXXXXXXXXXXXXXTPVQIVVGSFNSEGKKEPKQHAHS 233
++ G SR GGLSVS TPVQ+V+GSF ++ KK H +
Sbjct: 270 SESVGLSSRAGGLSVSLAGPDGRVLGGGVAGPLNAATPVQVVIGSFLADVKKG---HKQA 326
Query: 234 EPASAPSKAVPTAGMGPNSPPSRGTLSESSGGAGSPLHPGIAPPSSNSQPPFLSSMPWK 292
P+ AP V T P SRGT S SSGG GSPL+ + + S L+ PW+
Sbjct: 327 MPSGAPYPGVST-------PTSRGTPSGSSGGPGSPLNQSASGSFNTSNQQALADFPWR 378
>Os04g0683900 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 419
Score = 107 bits (268), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 110/238 (46%), Gaps = 35/238 (14%)
Query: 19 TRNKRGRPRKYGPDGSMSLGLXXXXXXXXXXXXXQGVPGPFSPTQPKPPASFL--SSGWP 76
+ KRGRPRKYGPDG+M + G S A + SG
Sbjct: 125 VKRKRGRPRKYGPDGTMKVSTAAAAQHQQQMLSAPPRMGSVS------GADMVGGGSGMD 178
Query: 77 DGV--KKRGRPKGSTNKPRIDA----------VGSAGVGFTPHVITVLAGEDVSAKIMSF 124
D K+RGRP G+ K ++ + GSAG FTPH+IT EDV+ KI++F
Sbjct: 179 DSAQKKRRGRPPGTGKKQQLSSPVKLSGGNAFSGSAGTSFTPHIITASPSEDVAGKIVAF 238
Query: 125 AQHGNRAVCVLSANGAISNVTLRQTATSGGT-----------VTYEGRFEILSLSGSFLL 173
A H +RAVCVLSA G++S V LR A + YEG +EILS+SG + L
Sbjct: 239 ANHSSRAVCVLSATGSVSRVVLRHPADGAMSRVHASSHYKNPAIYEGLYEILSMSGCYNL 298
Query: 174 TDHGGQRSRTGGLSVSXXXXXXXXXXXXXXXXXXXXTPVQIVVGSFNSEGKKEPKQHA 231
+ G ++ GLSV+ + VQ+V+GSF G K + A
Sbjct: 299 MNEG----QSDGLSVTLCSPERHIIGGVLGGALVAASTVQVVLGSFVQGGSKPKSKKA 352
>Os02g0448000 Protein of unknown function DUF296 domain containing protein
Length = 316
Score = 90.9 bits (224), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/110 (48%), Positives = 63/110 (57%), Gaps = 9/110 (8%)
Query: 72 SSGWPDGV-------KKRGRPKGSTNKPR--IDAVGSAGVGFTPHVITVLAGEDVSAKIM 122
S G PDG + RGRP GS NKP+ I + HV+ V G D+S I
Sbjct: 83 SGGGPDGAGSESATRRPRGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESIT 142
Query: 123 SFAQHGNRAVCVLSANGAISNVTLRQTATSGGTVTYEGRFEILSLSGSFL 172
+FA+ R VCVLS G ++NVTLRQ A+ G V GRFEILSLSGSFL
Sbjct: 143 TFARRRQRGVCVLSGAGTVTNVTLRQPASQGAVVALHGRFEILSLSGSFL 192
>Os04g0590200 Protein of unknown function DUF296 domain containing protein
Length = 305
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 61/96 (63%), Gaps = 3/96 (3%)
Query: 80 KKRGRPKGSTNKPR--IDAVGSAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVCVLSA 137
+ RGRP GS NKP+ + + H++ V +G DV + ++A+ R VCVLS
Sbjct: 83 RPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGCDVFECVSTYARRRQRGVCVLSG 142
Query: 138 NGAISNVTLRQ-TATSGGTVTYEGRFEILSLSGSFL 172
+G ++NVTLRQ +A +G V+ GRFEILSLSGSFL
Sbjct: 143 SGVVTNVTLRQPSAPAGAVVSLHGRFEILSLSGSFL 178
>Os08g0159700 Protein of unknown function DUF296 domain containing protein
Length = 289
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 58/101 (57%), Gaps = 8/101 (7%)
Query: 80 KKRGRPKGSTNKPR--IDAVGSAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVCVLSA 137
+ RGRP GS NKP+ + + H++ V AG DV + ++A+ R VCVLSA
Sbjct: 64 RPRGRPPGSKNKPKPPVIITRESANALRAHILEVAAGCDVFEALTAYARRRQRGVCVLSA 123
Query: 138 NGAISNVTLRQTAT------SGGTVTYEGRFEILSLSGSFL 172
G ++NVTLRQ + S T GRFEILSL+GSFL
Sbjct: 124 AGTVANVTLRQPQSAQPGPASPAVATLHGRFEILSLAGSFL 164
>Os06g0136900 Protein of unknown function DUF296 domain containing protein
Length = 328
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/96 (44%), Positives = 58/96 (60%), Gaps = 3/96 (3%)
Query: 80 KKRGRPKGSTNKPR--IDAVGSAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVCVLSA 137
+ RGRP GS NKP+ + + HV+ V +G D+ + +FA+ VCVLSA
Sbjct: 112 RPRGRPAGSKNKPKPPVIITRDSASALRAHVLEVASGCDLVDSVATFARRRQVGVCVLSA 171
Query: 138 NGAISNVTLRQT-ATSGGTVTYEGRFEILSLSGSFL 172
GA++NV++RQ A G V GRF+ILSLSGSFL
Sbjct: 172 TGAVTNVSVRQPGAGPGAVVNLTGRFDILSLSGSFL 207
>Os09g0464300
Length = 334
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 80 KKRGRPKGSTNKPR----IDAVGSAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVCVL 135
K+RGRP GS NKP+ I PHVI + G DV+ + F+ N +CVL
Sbjct: 83 KRRGRPPGSKNKPKPPVVITREAEPAAAMRPHVIEIPGGRDVAEALARFSSRRNLGICVL 142
Query: 136 SANGAISNVTLRQTA-----TSGGTVTYEGRFEILSLSGSFL 172
+ GA++NV+LR + ++ + + GR+EILSLS +FL
Sbjct: 143 AGTGAVANVSLRHPSPGVPGSAPAAIVFHGRYEILSLSATFL 184
>Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 266
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 42/66 (63%)
Query: 107 HVITVLAGEDVSAKIMSFAQHGNRAVCVLSANGAISNVTLRQTATSGGTVTYEGRFEILS 166
HV+ V G DV+ I F++ R VCVLS G ++NV LRQ + G V GRFEILS
Sbjct: 88 HVMEVAGGADVADAIAQFSRRRQRGVCVLSGAGTVANVALRQPSAPGAVVALHGRFEILS 147
Query: 167 LSGSFL 172
L+G+FL
Sbjct: 148 LTGTFL 153
>Os06g0326900 Protein of unknown function DUF296 domain containing protein
Length = 322
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 80 KKRGRPKGSTNKPR--IDAVGSAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVCVLSA 137
+ RGRP GS NKP+ I + F HV+ V AG D+ + FA+ R V VLS
Sbjct: 84 RPRGRPLGSKNKPKPPIIVTRDSPNAFHSHVLEVAAGTDIVECVCEFARRRGRGVSVLSG 143
Query: 138 NGAISNVTLRQTATS--GGTV-TYEGRFEILSLSGSFL 172
GA++NV LRQ S G V T G+FEILSL+G+ L
Sbjct: 144 GGAVANVALRQPGASPPGSLVATMRGQFEILSLTGTVL 181
>Os08g0563200 Protein of unknown function DUF296 domain containing protein
Length = 235
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 41/66 (62%)
Query: 107 HVITVLAGEDVSAKIMSFAQHGNRAVCVLSANGAISNVTLRQTATSGGTVTYEGRFEILS 166
HV+ V G DV+ I FA+ R VCVLS G +++V LRQ A V GRFEILS
Sbjct: 65 HVMEVAGGADVAESIAHFARRRQRGVCVLSGAGTVTDVALRQPAAPSAVVALRGRFEILS 124
Query: 167 LSGSFL 172
L+G+FL
Sbjct: 125 LTGTFL 130
>Os03g0270000 Protein of unknown function DUF296 domain containing protein
Length = 258
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 45/67 (67%), Gaps = 1/67 (1%)
Query: 107 HVITVLAGEDVSAKIMSFAQHGNRAVCVLSANGAISNVTLRQTATSG-GTVTYEGRFEIL 165
HV+ + +G D+ I F++ R V VLS +GA++NVTLRQ A +G V GRFEIL
Sbjct: 75 HVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTGAAAVALRGRFEIL 134
Query: 166 SLSGSFL 172
S+SG+FL
Sbjct: 135 SMSGAFL 141
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.132 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,382,320
Number of extensions: 531728
Number of successful extensions: 3111
Number of sequences better than 1.0e-10: 22
Number of HSP's gapped: 3065
Number of HSP's successfully gapped: 22
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 155 (64.3 bits)