Os06g0326000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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Os06g0326000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HMG-I and HMG-Y, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.36 | 0.437 | 9.73 | 0.78 | 3.52 | -2.09 | -1.17 | 0.00828 | 0.0606 | 16.5 | 1.548 | 271 | 19 | -- |
| 86.17 | 0.432 | 9.73 | 0.773 | 3.57 | -2.06 | -1.17 | -- | 0.0504 | 16.6 | 1.56 | 270 | 18.8 | -- |
| 89.73 | 0.441 | 9.74 | 0.781 | 3.53 | -2.08 | -- | 0.624 | 0.0469 | 16.5 | 1.631 | 275 | 19 | -- |
| 89.83 | 0.441 | 9.73 | 0.771 | 3.56 | -2.03 | -- | -- | 0.0518 | 16.5 | 1.55 | 270 | 18.8 | -- |
| 118.95 | 0.508 | 9.68 | 1.08 | -- | -4.11 | -- | 1.09 | 0.0844 | -- | 2.164 | 451 | 4.01 | -- |
| 141.03 | 0.557 | 9.73 | 0.937 | 4.09 | -- | -0.764 | -- | 0.0852 | 16.5 | -- | -- | -- | -- |
| 142.6 | 0.559 | 9.74 | 0.932 | 4.08 | -- | -- | -- | 0.0811 | 16.5 | -- | -- | -- | -- |
| 120.66 | 0.512 | 9.69 | 1.02 | -- | -4.1 | -- | -- | 0.0889 | -- | 5.234 | 444 | 4.26 | -- |
| 105.29 | 0.478 | 9.74 | -- | 3.51 | -2.18 | -- | -- | -0.00735 | 16.6 | 1.557 | 275 | 18.8 | -- |
| 1032.87 | 1.5 | 9.71 | 0.773 | -- | -- | -- | -- | -0.0264 | -- | -- | -- | -- | -- |
| 165.47 | 0.602 | 9.76 | -- | 4.06 | -- | -- | -- | -0.0226 | 16.5 | -- | -- | -- | -- |
| 139.75 | 0.551 | 9.7 | -- | -- | -3.99 | -- | -- | -0.0232 | -- | 10.22 | 401 | 4.18 | -- |
| 1048.62 | 1.51 | 9.73 | -- | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.70 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 18 |
| 2 | 86.11 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 20 |
| 5 | 87.64 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 17 |
| 10 | 88.50 | radiation | 1.0 | 270 | < th | dose independent | sin | 1 | NA |
| 15 | 89.10 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 17 |
| 20 | 89.62 | radiation | 1.0 | 270 | > th | dose independent | sin | 1 | NA |
| 28 | 90.42 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 30 | 90.76 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 18 |
| 37 | 91.14 | radiation | 1.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 90 | 94.39 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 94 | 94.47 | humidity | 70.0 | 10 | > th | dose independent | rect. | 3 | 19 |
| 141 | 96.24 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 186 | 97.27 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 8 |
| 192 | 97.49 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 2 | 9 |
| 209 | 97.84 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 8 |
| 271 | 99.28 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 18 |
| 316 | 100.22 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 327 | 100.41 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 11 |
| 349 | 100.79 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 19 |
| 356 | 100.90 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 8 |
| 464 | 102.18 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 543 | 102.98 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 568 | 103.27 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 3 |
| 569 | 103.27 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 579 | 103.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 580 | 103.37 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 3 |
| 581 | 103.37 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 584 | 103.37 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 585 | 103.37 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 3 |
| 592 | 103.37 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 21 |
| 593 | 103.37 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 598 | 103.38 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 3 |
| 599 | 103.38 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 628 | 103.67 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 5 |
| 629 | 103.67 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 643 | 103.85 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 644 | 103.85 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 645 | 103.85 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 648 | 103.85 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 649 | 103.85 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 654 | 103.85 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 19 |
| 655 | 103.85 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 665 | 103.92 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 15 |
| 666 | 103.93 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 667 | 103.93 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 669 | 103.94 | humidity | 70.0 | 10 | > th | dose independent | rect. | 3 | 9 |
| 694 | 104.18 | radiation | 40.0 | 270 | < th | dose independent | rect. | 1 | 20 |
| 697 | 104.19 | humidity | 50.0 | 270 | > th | dose independent | rect. | 13 | 8 |
| 714 | 104.35 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 788 | 104.75 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 15 | 17 |
| 800 | 104.84 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 853 | 105.14 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 17 | 18 |
| 861 | 105.20 | wind | 1.0 | 270 | > th | dose independent | rect. | 22 | 3 |
| 880 | 105.27 | wind | 9.0 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 903 | 105.42 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 909 | 105.44 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 918 | 105.52 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 21 |
| 927 | 105.58 | temperature | 30.0 | 270 | < th | dose independent | rect. | 16 | 15 |
| 939 | 105.73 | wind | 1.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 958 | 105.82 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 22 |
| 959 | 105.82 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 965 | 105.88 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 20 |
| 969 | 105.90 | humidity | 60.0 | 270 | > th | dose dependent | sin | 4 | NA |