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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0448000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF296 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.66 (0.0395) R2 : 0.713
β1 : 3.99 (0.15) R2dD : 0.465 R2D : 0.086
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.82 (0.174) R2dE : 0.665 R2E : 0.264
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.779 (0.0867) R2dN8 : 0.0486 R2N8 : -0.114
σ : 0.734
deviance : 248.05
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 43.83
memory length : 3286
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.8
open length of G : 6.12

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
239.8 0.728 4.66 3.17 2.31 3.11 0.679 -0.144 0.46 11.7 29.6 252 3.82 20.7
239.78 0.721 4.66 3.16 2.31 3.14 0.711 -- 0.464 11.7 29.54 254 3.78 20.7
241.69 0.724 4.66 3.19 2.3 3.1 -- -0.235 0.461 11.7 29.6 255 3.76 20.7
241.75 0.724 4.66 3.17 2.3 3.1 -- -- 0.469 11.7 29.6 258 3.71 20.7
420.54 0.955 4.65 3.78 -- 4.24 -- -1.42 0.618 -- 35.75 910 0.721 24
404.95 0.943 4.79 2.37 2.2 -- 0.533 -- -0.117 11.3 -- -- -- --
406.16 0.944 4.79 2.39 2.2 -- -- -- -0.115 11.3 -- -- -- --
248.05 0.734 4.66 3.99 -- 5.82 -- -- 0.779 -- 43.83 3286 3.8 6.12
458.33 0.997 4.76 -- 2.13 2.53 -- -- -0.252 8.48 73.24 364 2.4 20.6
708.23 1.24 4.84 2.34 -- -- -- -- -0.135 -- -- -- -- --
557.22 1.1 4.85 -- 2.17 -- -- -- -0.381 11.2 -- -- -- --
481.18 1.02 4.86 -- -- 3.22 -- -- -0.152 -- 100.1 3190 4.29 6.84
852.62 1.36 4.9 -- -- -- -- -- -0.395 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 242.56 temperature 30 270 < th dose dependent rect. 4 20
4 245.21 radiation 40 4320 < th dose dependent rect. 18 7
11 249.69 temperature 30 270 < th dose dependent rect. 17 18
12 249.93 radiation 1 14400 < th dose dependent rect. 18 5
13 249.96 radiation 1 14400 < th dose dependent rect. 18 2
20 250.17 radiation 1 14400 < th dose dependent rect. 18 13
28 250.97 radiation 1 14400 < th dose dependent rect. 18 18
38 251.84 radiation 1 43200 > th dose independent rect. 18 1
78 253.48 radiation 1 14400 < th dose dependent sin 11 NA
82 253.65 radiation 1 14400 < th dose dependent rect. 5 1
94 254.08 radiation 1 43200 < th dose independent rect. 18 7
108 254.32 radiation 1 14400 < th dose dependent rect. 6 17
109 254.34 radiation 1 14400 < th dose dependent rect. 6 23
110 254.35 radiation 1 43200 < th dose independent rect. 18 2
113 254.35 radiation 1 14400 < th dose dependent rect. 6 13
126 254.57 radiation 1 14400 < th dose dependent rect. 21 9
146 254.72 radiation 1 14400 < th dose dependent rect. 4 19
151 254.74 radiation 1 14400 < th dose dependent rect. 4 15
154 254.74 radiation 1 14400 < th dose dependent rect. 8 21
174 254.82 radiation 1 14400 < th dose dependent rect. 8 15
180 254.85 radiation 1 14400 < th dose dependent rect. 8 11
198 254.92 radiation 1 14400 < th dose dependent rect. 8 23
201 254.93 radiation 1 14400 < th dose dependent rect. 22 21
207 254.94 radiation 1 14400 < th dose dependent no NA NA
240 255.04 temperature 10 270 > th dose dependent rect. 24 16
244 255.05 radiation 1 14400 < th dose dependent rect. 10 23
298 255.70 temperature 20 720 > th dose dependent rect. 17 18
302 255.73 temperature 10 720 > th dose dependent rect. 17 18
363 256.24 radiation 1 14400 < th dose dependent rect. 4 10
367 256.27 radiation 1 14400 < th dose dependent rect. 4 8
436 256.66 radiation 1 14400 < th dose dependent rect. 21 17
454 256.74 temperature 10 270 > th dose dependent rect. 8 22
509 257.33 radiation 1 14400 > th dose independent rect. 17 14
511 257.43 radiation 1 14400 < th dose independent rect. 18 20
514 257.50 wind 5 43200 > th dose dependent rect. 9 5
518 257.57 radiation 40 14400 < th dose dependent rect. 18 2
539 257.82 wind 5 43200 > th dose dependent rect. 8 7
565 258.12 radiation 1 14400 > th dose independent rect. 17 21
591 258.40 wind 7 43200 > th dose independent rect. 9 3
593 258.41 wind 7 43200 < th dose independent rect. 9 3
594 258.42 radiation 1 14400 > th dose independent rect. 17 19
597 258.51 wind 5 43200 > th dose independent rect. 11 1
598 258.52 wind 3 43200 > th dose dependent rect. 11 1
611 258.62 wind 5 43200 < th dose independent rect. 11 1
655 258.81 temperature 15 270 > th dose dependent rect. 23 18
685 259.04 wind 5 43200 > th dose independent rect. 9 5
690 259.07 wind 5 43200 < th dose independent rect. 9 5
696 259.18 wind 7 43200 < th dose independent rect. 7 7
699 259.19 wind 7 43200 < th dose independent rect. 4 11
703 259.26 wind 7 43200 < th dose independent rect. 5 9
708 259.31 wind 7 43200 < th dose independent rect. 24 15
718 259.42 wind 7 43200 > th dose independent rect. 7 7
737 259.53 wind 7 43200 > th dose independent rect. 4 11
739 259.55 wind 7 43200 > th dose independent rect. 24 15
740 259.57 wind 7 43200 > th dose independent rect. 6 9
748 259.62 wind 5 43200 > th dose dependent rect. 5 10
759 259.78 humidity 90 43200 > th dose independent rect. 22 1
763 259.84 radiation 1 14400 < th dose independent sin 11 NA
779 260.01 radiation 1 14400 < th dose independent rect. 6 19
784 260.04 radiation 1 14400 < th dose independent rect. 8 17
798 260.11 radiation 1 14400 < th dose independent rect. 6 14
808 260.16 radiation 1 14400 < th dose independent rect. 8 12
878 260.43 wind 7 43200 > th dose independent rect. 20 19
881 260.45 temperature 20 1440 > th dose dependent rect. 19 3
904 260.61 radiation 1 14400 > th dose independent sin 12 NA
927 260.73 radiation 1 14400 < th dose independent rect. 13 23
928 260.75 radiation 1 14400 > th dose independent rect. 8 11
940 260.75 radiation 1 14400 < th dose independent rect. 8 23
953 260.81 radiation 1 14400 < th dose independent no NA NA
955 260.81 radiation 1 14400 < th dose independent rect. 22 22
956 260.81 radiation 1 14400 < th dose independent rect. 20 23
970 260.83 temperature 20 1440 > th dose dependent rect. 16 8