BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0448000 Os02g0448000|016-057-H04
(316 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0448000 Protein of unknown function DUF296 domain cont... 425 e-119
Os06g0136900 Protein of unknown function DUF296 domain cont... 228 5e-60
Os04g0590200 Protein of unknown function DUF296 domain cont... 210 1e-54
Os08g0563200 Protein of unknown function DUF296 domain cont... 202 3e-52
Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing... 197 1e-50
Os08g0159700 Protein of unknown function DUF296 domain cont... 189 2e-48
Os03g0270000 Protein of unknown function DUF296 domain cont... 182 4e-46
Os06g0326900 Protein of unknown function DUF296 domain cont... 167 1e-41
Os02g0713700 Protein of unknown function DUF296 domain cont... 159 2e-39
Os06g0623800 149 3e-36
Os09g0365400 130 2e-30
Os07g0235200 Protein of unknown function DUF296 domain cont... 122 3e-28
Os09g0464300 119 2e-27
Os01g0953801 Protein of unknown function DUF296 domain cont... 118 6e-27
Os08g0478466 Protein of unknown function DUF296 domain cont... 104 9e-23
Os08g0512400 HMG-I and HMG-Y, DNA-binding domain containing... 91 8e-19
Os10g0572900 Protein of unknown function DUF296 domain cont... 87 1e-17
Os02g0125200 HMG-I and HMG-Y, DNA-binding domain containing... 78 7e-15
Os08g0118000 HMG-I and HMG-Y, DNA-binding domain containing... 77 2e-14
Os09g0491708 HMG-I and HMG-Y, DNA-binding domain containing... 77 2e-14
Os11g0149100 Protein of unknown function DUF296 domain cont... 74 1e-13
Os04g0589900 HMG-I and HMG-Y, DNA-binding domain containing... 74 1e-13
Os02g0824300 HMG-I and HMG-Y, DNA-binding domain containing... 71 9e-13
Os12g0147000 Protein of unknown function DUF296 domain cont... 69 4e-12
Os01g0246601 Protein of unknown function DUF296 domain cont... 67 3e-11
>Os02g0448000 Protein of unknown function DUF296 domain containing protein
Length = 316
Score = 425 bits (1092), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/316 (72%), Positives = 229/316 (72%)
Query: 1 MDPVTASIHGHHLPPPFNTRDFXXXXXXXXXXXXXKTEDDQGGGTPGVFGSRGTKRXXXX 60
MDPVTASIHGHHLPPPFNTRDF KTEDDQGGGTPGVFGSRGTKR
Sbjct: 1 MDPVTASIHGHHLPPPFNTRDFHHHLQQQQHQLHLKTEDDQGGGTPGVFGSRGTKRDHDD 60
Query: 61 XXXXXXXXXXXXXXXXLALVXXXXXXXXXXXXXXATRRPRGRPAGSKNKPKPPIIITRDS 120
LALV ATRRPRGRPAGSKNKPKPPIIITRDS
Sbjct: 61 DENSGNGHGSGGDGGDLALVPPSGGGPDGAGSESATRRPRGRPAGSKNKPKPPIIITRDS 120
Query: 121 ANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVTLRQPASQGAVVALHG 180
ANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVTLRQPASQGAVVALHG
Sbjct: 121 ANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVTLRQPASQGAVVALHG 180
Query: 181 RFEILSLSGSFLPPPAPPEATGLTVYLAXXXXXXXXXXXXXALTAAGPVVIMAASFANAV 240
RFEILSLSGSFLPPPAPPEATGLTVYLA ALTAAGPVVIMAASFANAV
Sbjct: 181 RFEILSLSGSFLPPPAPPEATGLTVYLAGGQGQVVGGSVVGALTAAGPVVIMAASFANAV 240
Query: 241 YERLPLEDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXVDPSLFQGLPPNLLGNVQLPPEA 300
YERLPLEDDE VDPSLFQGLPPNLLGNVQLPPEA
Sbjct: 241 YERLPLEDDELLAAQGQADSAGLLAAGQQAAQLAGGAVDPSLFQGLPPNLLGNVQLPPEA 300
Query: 301 AYGWNPGAGGGRPAPF 316
AYGWNPGAGGGRPAPF
Sbjct: 301 AYGWNPGAGGGRPAPF 316
>Os06g0136900 Protein of unknown function DUF296 domain containing protein
Length = 328
Score = 228 bits (581), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 124/209 (59%), Positives = 138/209 (66%), Gaps = 5/209 (2%)
Query: 97 RRPRGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLS 156
RRPRGRPAGSKNKPKPP+IITRDSA+ LR HV+EVA GCD+ +S+ TFARRRQ GVCVLS
Sbjct: 111 RRPRGRPAGSKNKPKPPVIITRDSASALRAHVLEVASGCDLVDSVATFARRRQVGVCVLS 170
Query: 157 GAGTVTNVTLRQP-ASQGAVVALHGRFEILSLSGSFLPPPAPPEATGLTVYLAXXXXXXX 215
G VTNV++RQP A GAVV L GRF+ILSLSGSFLPPPAPP ATGLTVY++
Sbjct: 171 ATGAVTNVSVRQPGAGPGAVVNLTGRFDILSLSGSFLPPPAPPSATGLTVYVSGGQGQVV 230
Query: 216 XXXXXXALTAAGPVVIMAASFANAVYERLPLEDDEXXXXXXXXXXXXXXXXXXXXXXXXX 275
L A GPVVIMAASF NA YERLPLEDDE
Sbjct: 231 GGTVAGPLIAVGPVVIMAASFGNAAYERLPLEDDEPPQHMAGGGQSSPPPPPLPLPPHQ- 289
Query: 276 XXVDPSLFQGLPPNLLGNVQLPPEAAYGW 304
P L LP NL+ + LP +AAYGW
Sbjct: 290 ---QPILQDHLPHNLMNGIHLPGDAAYGW 315
>Os04g0590200 Protein of unknown function DUF296 domain containing protein
Length = 305
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/148 (70%), Positives = 120/148 (81%), Gaps = 1/148 (0%)
Query: 97 RRPRGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLS 156
RRPRGRP GSKNKPKPP+IITR+SANTLR H++EV GCD+ E ++T+ARRRQRGVCVLS
Sbjct: 82 RRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVGSGCDVFECVSTYARRRQRGVCVLS 141
Query: 157 GAGTVTNVTLRQP-ASQGAVVALHGRFEILSLSGSFLPPPAPPEATGLTVYLAXXXXXXX 215
G+G VTNVTLRQP A GAVV+LHGRFEILSLSGSFLPPPAPP AT LT++LA
Sbjct: 142 GSGVVTNVTLRQPSAPAGAVVSLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVV 201
Query: 216 XXXXXXALTAAGPVVIMAASFANAVYER 243
AL AAGPV+++AASFAN YER
Sbjct: 202 GGNVVGALYAAGPVIVIAASFANVAYER 229
>Os08g0563200 Protein of unknown function DUF296 domain containing protein
Length = 235
Score = 202 bits (514), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/145 (69%), Positives = 117/145 (80%)
Query: 106 SKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVT 165
SKNKPKPPI +TRDS N LR+HVMEVAGG D++ESI FARRRQRGVCVLSGAGTVT+V
Sbjct: 44 SKNKPKPPIFVTRDSPNALRSHVMEVAGGADVAESIAHFARRRQRGVCVLSGAGTVTDVA 103
Query: 166 LRQPASQGAVVALHGRFEILSLSGSFLPPPAPPEATGLTVYLAXXXXXXXXXXXXXALTA 225
LRQPA+ AVVAL GRFEILSL+G+FLP PAPP +TGLTVYLA LTA
Sbjct: 104 LRQPAAPSAVVALRGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGSVVGTLTA 163
Query: 226 AGPVVIMAASFANAVYERLPLEDDE 250
AGPV+++A++FANA YERLPL+ +E
Sbjct: 164 AGPVMVIASTFANATYERLPLDQEE 188
>Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 266
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/141 (68%), Positives = 115/141 (81%)
Query: 106 SKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVT 165
SKNKPKPPI +TRDS N LR+HVMEVAGG D++++I F+RRRQRGVCVLSGAGTV NV
Sbjct: 67 SKNKPKPPIFVTRDSPNALRSHVMEVAGGADVADAIAQFSRRRQRGVCVLSGAGTVANVA 126
Query: 166 LRQPASQGAVVALHGRFEILSLSGSFLPPPAPPEATGLTVYLAXXXXXXXXXXXXXALTA 225
LRQP++ GAVVALHGRFEILSL+G+FLP PAPP +TGLTVYLA +L A
Sbjct: 127 LRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGSVVGSLIA 186
Query: 226 AGPVVIMAASFANAVYERLPL 246
AGPV+++A++FANA YERLPL
Sbjct: 187 AGPVMVIASTFANATYERLPL 207
>Os08g0159700 Protein of unknown function DUF296 domain containing protein
Length = 289
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 106/161 (65%), Positives = 120/161 (74%), Gaps = 6/161 (3%)
Query: 96 TRRPRGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVL 155
RRPRGRP GSKNKPKPP+IITR+SAN LR H++EVA GCD+ E++T +ARRRQRGVCVL
Sbjct: 62 ARRPRGRPPGSKNKPKPPVIITRESANALRAHILEVAAGCDVFEALTAYARRRQRGVCVL 121
Query: 156 SGAGTVTNVTLRQPASQG------AVVALHGRFEILSLSGSFLPPPAPPEATGLTVYLAX 209
S AGTV NVTLRQP S AV LHGRFEILSL+GSFLPPPAPP AT L +LA
Sbjct: 122 SAAGTVANVTLRQPQSAQPGPASPAVATLHGRFEILSLAGSFLPPPAPPGATSLAAFLAG 181
Query: 210 XXXXXXXXXXXXALTAAGPVVIMAASFANAVYERLPLEDDE 250
AL AAGPVV++AASF+N YERLPLED +
Sbjct: 182 GQGQVVGGSVAGALIAAGPVVVVAASFSNVAYERLPLEDGD 222
>Os03g0270000 Protein of unknown function DUF296 domain containing protein
Length = 258
Score = 182 bits (461), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/145 (62%), Positives = 110/145 (75%), Gaps = 1/145 (0%)
Query: 106 SKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVT 165
SKNKPKPP+++TR+S N +R+HV+E+A G DI E+I F+RRRQRGV VLSG+G VTNVT
Sbjct: 54 SKNKPKPPVVVTRESPNAMRSHVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVT 113
Query: 166 LRQPASQG-AVVALHGRFEILSLSGSFLPPPAPPEATGLTVYLAXXXXXXXXXXXXXALT 224
LRQPA G A VAL GRFEILS+SG+FLP PAPP ATGL VYLA L
Sbjct: 114 LRQPAGTGAAAVALRGRFEILSMSGAFLPAPAPPGATGLAVYLAGGQGQVVGGSVMGELI 173
Query: 225 AAGPVVIMAASFANAVYERLPLEDD 249
A+GPV+++AA+F NA YERLPL+ +
Sbjct: 174 ASGPVMVIAATFGNATYERLPLDQE 198
>Os06g0326900 Protein of unknown function DUF296 domain containing protein
Length = 322
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/157 (61%), Positives = 115/157 (73%), Gaps = 3/157 (1%)
Query: 97 RRPRGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLS 156
RRPRGRP GSKNKPKPPII+TRDS N +HV+EVA G DI E + FARRR RGV VLS
Sbjct: 83 RRPRGRPLGSKNKPKPPIIVTRDSPNAFHSHVLEVAAGTDIVECVCEFARRRGRGVSVLS 142
Query: 157 GAGTVTNVTLRQPASQ--GAVVA-LHGRFEILSLSGSFLPPPAPPEATGLTVYLAXXXXX 213
G G V NV LRQP + G++VA + G+FEILSL+G+ LPPPAPP A+GLTV+L+
Sbjct: 143 GGGAVANVALRQPGASPPGSLVATMRGQFEILSLTGTVLPPPAPPSASGLTVFLSGGQGQ 202
Query: 214 XXXXXXXXALTAAGPVVIMAASFANAVYERLPLEDDE 250
L AAGPV +MAASFANAVYERLPL+ ++
Sbjct: 203 VVGGSVAGQLIAAGPVFLMAASFANAVYERLPLDGED 239
>Os02g0713700 Protein of unknown function DUF296 domain containing protein
Length = 336
Score = 159 bits (403), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 108/144 (75%), Gaps = 3/144 (2%)
Query: 106 SKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVT 165
SKNKPKPPII+TRDS N L +HV+EVAGG D+ + + +ARRR RGVCVLSG G V NV
Sbjct: 108 SKNKPKPPIIVTRDSPNALHSHVLEVAGGADVVDCVAEYARRRGRGVCVLSGGGAVVNVA 167
Query: 166 LRQPASQ--GAVVA-LHGRFEILSLSGSFLPPPAPPEATGLTVYLAXXXXXXXXXXXXXA 222
LRQP + G++VA L GRFEILSL+G+ LPPPAPP A+GLTV+L+
Sbjct: 168 LRQPGASPPGSMVATLRGRFEILSLTGTVLPPPAPPGASGLTVFLSGGQGQVIGGSVVGP 227
Query: 223 LTAAGPVVIMAASFANAVYERLPL 246
L AAGPVV+MAASFANAVYERLPL
Sbjct: 228 LVAAGPVVLMAASFANAVYERLPL 251
>Os06g0623800
Length = 258
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/152 (54%), Positives = 106/152 (69%), Gaps = 5/152 (3%)
Query: 97 RRPRGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLS 156
RRPRGRP GSKNKPKPP+IITRDS + L +H++EVA G D++ + +ARRR RGVC++
Sbjct: 50 RRPRGRPLGSKNKPKPPVIITRDSPDALHSHIIEVAPGADVAACVAEYARRRGRGVCLMG 109
Query: 157 GAGTVTNVTLRQPASQGAVVALHGRFEILSLSGSFLPPPAPPEATGLTVYLAXXXXXXXX 216
+G V +V +R GA L GRFE+LS++G+ LPPPAPP A+GL+V L+
Sbjct: 110 ASGAVADVAVR-----GAAAPLPGRFELLSVTGTVLPPPAPPGASGLSVLLSAGQGQVVG 164
Query: 217 XXXXXALTAAGPVVIMAASFANAVYERLPLED 248
L AAGPV + AA+FANAVYERLPL D
Sbjct: 165 GCVVGPLVAAGPVTLFAATFANAVYERLPLAD 196
>Os09g0365400
Length = 1271
Score = 130 bits (326), Expect = 2e-30, Method: Composition-based stats.
Identities = 68/152 (44%), Positives = 88/152 (57%), Gaps = 11/152 (7%)
Query: 98 RPRGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSG 157
R R P SK KP+PP+I+ R+S NT+R+H+ME+A G D++E++ FARRRQ V
Sbjct: 101 RGRRMPRRSKEKPEPPVIVARESTNTMRSHMMEIADGEDVAEAVADFARRRQSWV----- 155
Query: 158 AGTVTNVTLRQPASQGAVVALHGRFEILSLSGSFLPPPAPPEATGLTVYLAXXXXXXXXX 217
+LRQP G+V+ L G EILSLSG+F+PPP+ ATGL LA
Sbjct: 156 ------ASLRQPGEPGSVIELSGPLEILSLSGAFMPPPSLANATGLKALLAGGQGQVIGG 209
Query: 218 XXXXALTAAGPVVIMAASFANAVYERLPLEDD 249
AL A G V I+AA +N YE L E D
Sbjct: 210 NVVGALRARGHVTILAAVVSNVTYECLSPEHD 241
>Os07g0235200 Protein of unknown function DUF296 domain containing protein
Length = 189
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/109 (61%), Positives = 81/109 (74%), Gaps = 5/109 (4%)
Query: 140 SITTFARRRQRGVCVLSGAGTVTNVTLRQPASQGAVVALHGRFEILSLSGSFLPPPAPPE 199
SI FARR++RG+CVLS A VT+V LRQPA+ GAVVAL GRFEILSL+G+FLP P PP
Sbjct: 32 SIAHFARRQRRGICVLSRADAVTDVALRQPAAPGAVVALRGRFEILSLTGTFLPGPGPPG 91
Query: 200 ATGLTVYLAXXXXXXXXXXXXXALTAAGPVVIMAASFANAVYERLPLED 248
+T LTVYLA LTAAGPV+++A++FANA YERLPL+
Sbjct: 92 STRLTVYLAGGQGQVVGT-----LTAAGPVMVIASTFANATYERLPLDQ 135
>Os09g0464300
Length = 334
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/168 (44%), Positives = 103/168 (61%), Gaps = 14/168 (8%)
Query: 96 TRRPRGRPAGSKNKPKPPIIITRDS--ANTLRTHVMEVAGGCDISESITTFARRRQRGVC 153
++ RGRP GSKNKPKPP++ITR++ A +R HV+E+ GG D++E++ F+ RR G+C
Sbjct: 81 AKKRRGRPPGSKNKPKPPVVITREAEPAAAMRPHVIEIPGGRDVAEALARFSSRRNLGIC 140
Query: 154 VLSGAGTVTNVTLRQPA-----SQGAVVALHGRFEILSLSGSFLPP-------PAPPEAT 201
VL+G G V NV+LR P+ S A + HGR+EILSLS +FLPP A A
Sbjct: 141 VLAGTGAVANVSLRHPSPGVPGSAPAAIVFHGRYEILSLSATFLPPAMSSVAPQAAVAAA 200
Query: 202 GLTVYLAXXXXXXXXXXXXXALTAAGPVVIMAASFANAVYERLPLEDD 249
GL++ LA L AA VV++AA+F N + RLP +DD
Sbjct: 201 GLSISLAGPHGQIVGGAVAGPLYAATTVVVVAAAFTNPTFHRLPADDD 248
>Os01g0953801 Protein of unknown function DUF296 domain containing protein
Length = 265
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 74/162 (45%), Positives = 100/162 (61%), Gaps = 13/162 (8%)
Query: 97 RRPRGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLS 156
R+PRGRP GSKNKPKPP+++TR+S +R V+E+ GC+++ ++ FARRR+ GV VL
Sbjct: 27 RKPRGRPLGSKNKPKPPVVVTRESEAAMRPVVLELGAGCEVAAAVAAFARRRRVGVSVLC 86
Query: 157 GAGTVTNVTLRQPASQGAVVALHGRFEILSLSGSFLP--------PPAPPEATGLTVYLA 208
G GTV VTLR P S A V LHGRFE+LSLSG+ LP PP P +V LA
Sbjct: 87 GRGTVAAVTLRLPTSPPAAVKLHGRFEVLSLSGTVLPSAAGEGAAPPPP-----FSVSLA 141
Query: 209 XXXXXXXXXXXXXALTAAGPVVIMAASFANAVYERLPLEDDE 250
+T A +V++AA+F +A RLP ++D+
Sbjct: 142 GAGGQVIGGTLAGEMTTADGLVVVAATFGSAEVHRLPADEDD 183
>Os08g0478466 Protein of unknown function DUF296 domain containing protein
Length = 324
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 104/177 (58%), Gaps = 23/177 (12%)
Query: 97 RRPRGRPAGSKNKPKPPIIITRDSANT-------LRTHVMEVAGGCDISESITTFARRRQ 149
+R RGRP GSKNKPKPP+++TR++A +R+HV+E+ GG D++ ++ +ARRR
Sbjct: 67 KRRRGRPPGSKNKPKPPVVVTREAAAAEPAAAAAMRSHVLEIPGGGDVAGALAGYARRRG 126
Query: 150 RGVCVLSGAGTVTNVTLRQP-----------ASQGAVVALHGRFEILSLSGSFLPPPAPP 198
G+CVL+G G V NV+LR P + AVV HGR+EILS+S +FLPP
Sbjct: 127 LGICVLAGTGAVANVSLRHPLPSGAAAEIGGGAAAAVVVFHGRYEILSISATFLPPAMAA 186
Query: 199 EAT-----GLTVYLAXXXXXXXXXXXXXALTAAGPVVIMAASFANAVYERLPLEDDE 250
A GL++ LA L AA VV++AA+FA+ + RLP E D+
Sbjct: 187 AAPRAALGGLSISLAGPHGQIFGGAVAGPLVAATTVVVVAAAFASPTFHRLPAEYDD 243
>Os08g0512400 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 292
Score = 91.3 bits (225), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 75/142 (52%), Gaps = 5/142 (3%)
Query: 98 RPRGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSG 157
+ RGRP GS NKP+ I + HV+ V G D+S I +FA+ R VCVLS
Sbjct: 80 KKRGRPKGSTNKPR--IDAVGSAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVCVLSA 137
Query: 158 AGTVTNVTLRQPASQGAVVALHGRFEILSLSGSFLPPPAPPEAT---GLTVYLAXXXXXX 214
G ++NVTLRQ A+ G V GRFEILSLSGSFL + + GL+V LA
Sbjct: 138 NGAISNVTLRQTATSGGTVTYEGRFEILSLSGSFLLTDHGGQRSRTGGLSVSLAGPDGRL 197
Query: 215 XXXXXXXALTAAGPVVIMAASF 236
L AA PV I+ SF
Sbjct: 198 LGGGVAGLLIAATPVQIVVGSF 219
>Os10g0572900 Protein of unknown function DUF296 domain containing protein
Length = 251
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 58/151 (38%), Positives = 79/151 (52%), Gaps = 5/151 (3%)
Query: 100 RGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSGAG 159
RGRP GS K + + + A T H++ V G D++ I F+++ R VC+LS G
Sbjct: 12 RGRPPGSGKKKQFEALGSWGIAFT--PHILTVKAGEDVASKIMAFSQQGPRTVCILSANG 69
Query: 160 TVTNVTLRQPASQGAVVALHGRFEILSLSGSFLPPP---APPEATGLTVYLAXXXXXXXX 216
++NVTLRQPA+ G +V GRFEI+SLSGSFL GL+V LA
Sbjct: 70 AISNVTLRQPATSGGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLG 129
Query: 217 XXXXXALTAAGPVVIMAASFANAVYERLPLE 247
L AA PV ++ ASF + P+E
Sbjct: 130 GCVAGMLMAATPVQVVVASFIAEGKKSKPVE 160
>Os02g0125200 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 388
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 3/113 (2%)
Query: 127 HVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVTLRQPASQGAVVALHGRFEILS 186
H++ VA G D++ + +F+++ R +C+LS G ++NVTLRQ + G V GRFE+LS
Sbjct: 175 HIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQQDTLGGTVTYEGRFELLS 234
Query: 187 LSGSFLPPPA---PPEATGLTVYLAXXXXXXXXXXXXXALTAAGPVVIMAASF 236
LSGSF P + + G++V LA L AA PV ++ SF
Sbjct: 235 LSGSFTPTDSGGTRSRSGGMSVSLAATDGRVIGGGVAGLLVAASPVQVVVGSF 287
>Os08g0118000 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 372
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 127 HVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVTLRQPASQGAVVALHGRFEILS 186
H++ VA G D++ + +F+++ R +C+LS G ++NVTLRQP S G + GRFE+LS
Sbjct: 171 HIITVAPGEDVTMKVISFSQQGPRAICILSANGVISNVTLRQPDSSGGTLTYEGRFELLS 230
Query: 187 LSGSFLPPPAP---PEATGLTVYLAXXXXXXXXXXXXXALTAAGPVVIMAASF 236
LSGSF+P + G++V LA L AA PV I+ SF
Sbjct: 231 LSGSFMPTENSGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQIVVGSF 283
>Os09g0491708 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 359
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 75/145 (51%), Gaps = 6/145 (4%)
Query: 98 RPRGRPAGSKNKPKPPIIITRDSANT---LRTHVMEVAGGCDISESITTFARRRQRGVCV 154
+ RGRP GS NK P D + HV+ V G D+S I +F++ RGVCV
Sbjct: 144 KKRGRPKGSTNKKHVPSFGIGDIGSAGAGFTPHVIFVKAGEDVSAKIMSFSQHGTRGVCV 203
Query: 155 LSGAGTVTNVTLRQPASQGAVVALHGRFEILSLSGSFLPPPAPPEAT---GLTVYLAXXX 211
LS G ++NVTLRQ A+ G V GRFEILSLSGSFL + GL+V LA
Sbjct: 204 LSANGAISNVTLRQAATSGGTVTYEGRFEILSLSGSFLLSENGGHRSRTGGLSVSLAGPD 263
Query: 212 XXXXXXXXXXALTAAGPVVIMAASF 236
LTAA PV I+ SF
Sbjct: 264 GRVLGGGVAGLLTAASPVQIVVGSF 288
>Os11g0149100 Protein of unknown function DUF296 domain containing protein
Length = 366
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 69/144 (47%), Gaps = 5/144 (3%)
Query: 98 RPRGRPAGSKNKPKPPII---ITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCV 154
R RGRP GS + + + + HV+ V G D++ I +F+++ R +C+
Sbjct: 108 RRRGRPKGSGRRQILATLGEWYALSAGGSFTPHVIIVGTGEDVAGRIMSFSQKGPRSICI 167
Query: 155 LSGAGTVTNVTLRQPASQGAVVALHGRFEILSLSGSFL--PPPAPPEATGLTVYLAXXXX 212
LS GT++NV L QP S G+ GRFEIL L+GSF GL+V LA
Sbjct: 168 LSANGTISNVALSQPGSSGSTFTYEGRFEILQLTGSFTMAEEGGRRRTGGLSVSLAGPDG 227
Query: 213 XXXXXXXXXALTAAGPVVIMAASF 236
L AA P+ ++ SF
Sbjct: 228 RVVGGVVAGMLRAASPIQVIVGSF 251
>Os04g0589900 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 379
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 67/140 (47%), Gaps = 5/140 (3%)
Query: 100 RGRPAGSKNKPKPPIIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSGAG 159
RGRP GS K + + S + H++ V D++ I F+++ R C++S G
Sbjct: 148 RGRPPGSGKKKQ--LDALGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANG 205
Query: 160 TVTNVTLRQPASQGAVVALHGRFEILSLSGSFL---PPPAPPEATGLTVYLAXXXXXXXX 216
+ TLRQPA+ G +V G F+ILSLSGSFL GL+V LA
Sbjct: 206 ALCTATLRQPATSGGIVTYEGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVG 265
Query: 217 XXXXXALTAAGPVVIMAASF 236
L AA PV ++ SF
Sbjct: 266 GCVAGMLMAATPVQVVVGSF 285
>Os02g0824300 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 394
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 74/147 (50%), Gaps = 8/147 (5%)
Query: 97 RRPRGRPAGSKNKPKPPIIITRDSANTLRT----HVMEVAGGCDISESITTFARRRQRGV 152
+R RGRP GS K + + + ++ T HV+ ++ G D++ I +F+++ R V
Sbjct: 180 KRGRGRPPGS-GKMQQLASLGKWFLGSVGTGFTPHVIIISPGEDVAARIMSFSQQGPRAV 238
Query: 153 CVLSGAGTVTNVTLRQPASQGAVVALHGRFEILSLSGSFLPPPAPPEAT---GLTVYLAX 209
C++S G V+ TL Q ++ G VV GRFEIL LSGS+L T GL + L
Sbjct: 239 CIISATGAVSTATLHQDSNSGGVVTYEGRFEILCLSGSYLVIEEGGSRTRSGGLCIALCG 298
Query: 210 XXXXXXXXXXXXALTAAGPVVIMAASF 236
LTAAG V ++ SF
Sbjct: 299 PDHRVIGGSVGGVLTAAGTVQVIVGSF 325
>Os12g0147000 Protein of unknown function DUF296 domain containing protein
Length = 387
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 41/112 (36%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 127 HVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVTLRQPASQGAVVALHGRFEILS 186
HV+ VA G D++ I +F+++ R VC+L+ GT++NV L QP S G+ + G FEIL
Sbjct: 151 HVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGSSGSTFSYEGCFEILQ 210
Query: 187 LSGSFL--PPPAPPEATGLTVYLAXXXXXXXXXXXXXALTAAGPVVIMAASF 236
L+GSF GL+V LA L AA P+ ++ SF
Sbjct: 211 LTGSFTIAEEGVRRRTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGSF 262
>Os01g0246601 Protein of unknown function DUF296 domain containing protein
Length = 228
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/160 (35%), Positives = 76/160 (47%), Gaps = 16/160 (10%)
Query: 103 PAGSKNKPKPP--IIITRDSANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSGAGT 160
P + PKPP +I + + +R V+EV G D+ + ARR +RG VL +G
Sbjct: 30 PCKGRGAPKPPPVAVIAHECPSAMRALVVEVPAGRDVVSCVAAVARRARRGALVLGASGR 89
Query: 161 VTNVTLRQPASQGAVVALHGRFEILSLSGSFLPPPAP---------PEATGLTVYLA-XX 210
V +V LR+PA+ V L G EIL L+G F P P P V+LA
Sbjct: 90 VADVVLREPAA----VVLRGTMEILGLAGCFFPSPPPHAAAEGAPGGGGASAAVFLAGPR 145
Query: 211 XXXXXXXXXXXALTAAGPVVIMAASFANAVYERLPLEDDE 250
L AAGPVV++ A+F A ++RLPL E
Sbjct: 146 GGVLGGGVAPGGLVAAGPVVVVLATFVAAAFDRLPLLKGE 185
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,437,766
Number of extensions: 383460
Number of successful extensions: 1607
Number of sequences better than 1.0e-10: 26
Number of HSP's gapped: 1583
Number of HSP's successfully gapped: 26
Length of query: 316
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 215
Effective length of database: 11,762,187
Effective search space: 2528870205
Effective search space used: 2528870205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)