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Os04g0589900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : HMG-I and HMG-Y, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0141) R2 : 0.457
β1 : 1 (0.0516) R2dD : 0.466 R2D : 0.454
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0363 (0.0301) R2dN8 : 0.00233 R2N8 : -0.00922
σ : 0.265
deviance : 32.07
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.64 0.197 10.5 1.02 0.149 -0.34 -0.23 -0.0321 0.0306 2 20.02 11 -- --
17.64 0.196 10.5 1.02 0.148 -0.341 -0.211 -- 0.0306 2 20.04 11 -- --
17.76 0.196 10.5 1.02 0.154 -0.336 -- 0.0957 0.0326 1.89 20.03 11 -- --
17.78 0.196 10.5 1.01 0.139 -0.336 -- -- 0.0242 1.91 19.33 11 -- --
18.2 0.199 10.5 1.02 -- -0.401 -- 0.0886 0.0281 -- 16.1 16 -- --
22.01 0.22 10.5 0.984 0.401 -- -0.0924 -- 0.0281 0.982 -- -- -- --
22.04 0.22 10.5 0.987 0.401 -- -- -- 0.0287 0.962 -- -- -- --
18.18 0.199 10.5 1.02 -- -0.399 -- -- 0.0263 -- 17.3 11 -- --
43.66 0.308 10.5 -- 0.17 -0.306 -- -- -0.0594 2.38 19.91 18 -- --
32.07 0.265 10.5 1 -- -- -- -- 0.0363 -- -- -- -- --
47.72 0.323 10.5 -- 0.418 -- -- -- -0.0813 1.06 -- -- -- --
44.44 0.31 10.5 -- -- -0.424 -- -- -0.0756 -- 19.86 18 -- --
58.55 0.357 10.5 -- -- -- -- -- -0.0748 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 14.50 wind 1.0 270 > th dose independent rect. 2 5
2 14.65 wind 1.0 270 > th dose independent rect. 3 3
4 14.97 atmosphere 995.0 270 > th dose dependent rect. 2 5
6 15.03 temperature 10.0 270 > th dose dependent rect. 20 16
7 15.11 atmosphere 995.0 270 > th dose dependent rect. 3 3
8 15.15 radiation 10.0 270 < th dose dependent rect. 3 4
9 15.17 radiation 1.0 270 < th dose independent rect. 3 11
11 15.21 humidity 50.0 270 > th dose independent rect. 7 19
17 15.23 radiation 40.0 270 < th dose dependent rect. 2 5
22 15.28 wind 7.0 270 < th dose independent rect. 2 5
24 15.28 temperature 10.0 270 > th dose independent rect. 2 5
26 15.28 temperature 30.0 270 < th dose independent rect. 2 5
27 15.28 humidity 50.0 270 > th dose independent rect. 2 5
29 15.28 atmosphere 995.0 270 > th dose independent rect. 2 5
30 15.28 atmosphere 1015.0 270 < th dose independent rect. 2 5
31 15.28 radiation 30.0 270 < th dose independent rect. 2 5
33 15.28 temperature 10.0 270 > th dose independent rect. 7 19
40 15.31 precipitation 0.1 270 < th dose independent rect. 2 5
41 15.31 precipitation 0.1 270 < th dose dependent rect. 2 5
46 15.35 wind 9.0 270 < th dose independent rect. 7 19
51 15.39 atmosphere 1015.0 270 < th dose independent rect. 7 19
55 15.42 radiation 1.0 270 < th dose independent rect. 3 3
57 15.43 precipitation 0.1 270 < th dose independent rect. 7 19
58 15.43 precipitation 0.1 270 < th dose dependent rect. 7 19
59 15.44 wind 7.0 270 < th dose independent rect. 3 3
60 15.44 humidity 50.0 270 > th dose independent rect. 6 21
61 15.44 temperature 10.0 10 > th dose dependent rect. 9 19
63 15.45 temperature 10.0 270 > th dose independent rect. 3 3
65 15.45 temperature 30.0 270 < th dose independent rect. 3 3
66 15.45 humidity 50.0 270 > th dose independent rect. 3 3
69 15.45 atmosphere 995.0 270 > th dose independent rect. 3 3
70 15.45 atmosphere 1015.0 270 < th dose independent rect. 3 3
71 15.45 radiation 20.0 270 < th dose independent rect. 3 3
75 15.45 temperature 10.0 270 > th dose independent rect. 6 21
78 15.47 radiation 1.0 270 < th dose dependent rect. 3 11
79 15.48 precipitation 0.1 270 < th dose independent rect. 3 3
81 15.48 precipitation 0.1 270 < th dose dependent rect. 3 3
86 15.50 wind 1.0 270 > th dose independent rect. 13 18
101 15.56 wind 9.0 270 < th dose independent rect. 6 21
117 15.62 radiation 1.0 270 > th dose independent rect. 7 6
118 15.62 temperature 10.0 270 > th dose dependent rect. 18 8
120 15.63 temperature 30.0 270 < th dose dependent rect. 2 5
125 15.65 precipitation 0.1 270 < th dose independent rect. 6 21
127 15.65 precipitation 0.1 270 < th dose dependent rect. 6 21
150 15.70 temperature 15.0 270 > th dose independent rect. 7 6
157 15.74 wind 1.0 270 > th dose independent rect. 3 15
170 15.81 atmosphere 995.0 270 > th dose independent rect. 7 19
171 15.81 temperature 30.0 270 < th dose dependent rect. 3 3
172 15.81 temperature 10.0 270 > th dose dependent rect. 7 5
177 15.82 humidity 50.0 270 > th dose dependent rect. 2 5
198 15.90 humidity 50.0 270 > th dose dependent rect. 3 3
225 15.95 atmosphere 1015.0 270 < th dose independent rect. 6 21
302 16.06 precipitation 0.1 270 < th dose independent rect. 7 6
308 16.06 precipitation 0.1 270 < th dose dependent rect. 7 6
317 16.08 humidity 60.0 270 > th dose independent rect. 18 9
323 16.09 wind 9.0 270 < th dose independent rect. 7 6
328 16.10 wind 7.0 270 < th dose independent rect. 18 9
329 16.10 temperature 30.0 270 < th dose independent rect. 18 9
333 16.11 atmosphere 995.0 270 > th dose independent rect. 7 6
334 16.11 atmosphere 1015.0 270 < th dose independent rect. 7 6
336 16.11 radiation 10.0 270 < th dose independent rect. 18 9
337 16.11 wind 9.0 270 < th dose independent rect. 13 18
338 16.11 temperature 10.0 270 > th dose independent rect. 13 18
341 16.11 radiation 10.0 270 < th dose dependent rect. 18 9
344 16.12 humidity 90.0 270 < th dose independent rect. 7 5
347 16.12 precipitation 0.1 270 < th dose independent rect. 13 18
348 16.12 precipitation 0.1 270 < th dose dependent rect. 13 18
349 16.13 humidity 50.0 270 > th dose independent rect. 7 6
352 16.13 radiation 20.0 30 < th dose independent rect. 5 15
358 16.14 radiation 40.0 270 < th dose independent rect. 13 18
383 16.16 temperature 10.0 270 > th dose independent rect. 18 9
388 16.16 temperature 10.0 270 > th dose independent rect. 3 15
389 16.16 atmosphere 1015.0 270 < th dose independent rect. 3 15
395 16.17 atmosphere 995.0 270 > th dose independent rect. 18 9
396 16.17 atmosphere 995.0 270 > th dose independent rect. 6 21
415 16.21 radiation 20.0 10 < th dose independent rect. 4 6
419 16.21 radiation 30.0 10 < th dose dependent rect. 5 15
429 16.23 wind 9.0 270 < th dose independent rect. 3 15
464 16.27 wind 9.0 270 < th dose dependent rect. 2 5
487 16.29 precipitation 0.1 270 < th dose independent rect. 3 15
491 16.29 precipitation 0.1 270 < th dose dependent rect. 3 15
516 16.31 atmosphere 995.0 270 > th dose independent rect. 13 18
527 16.32 temperature 20.0 30 > th dose independent rect. 9 19
558 16.34 wind 9.0 270 < th dose dependent rect. 3 3
580 16.35 precipitation 0.1 270 < th dose independent rect. 18 9
583 16.35 precipitation 0.1 270 < th dose dependent rect. 18 9
627 16.41 radiation 1.0 270 > th dose independent sin 2 NA
646 16.42 temperature 10.0 1440 > th dose independent rect. 5 5
649 16.42 atmosphere 995.0 1440 > th dose independent rect. 5 5
650 16.42 atmosphere 1015.0 1440 < th dose independent rect. 5 5
652 16.42 temperature 10.0 1440 > th dose independent rect. 10 19
678 16.44 radiation 1.0 270 < th dose independent sin 2 NA
682 16.44 temperature 10.0 270 > th dose dependent rect. 3 3
707 16.47 radiation 40.0 90 < th dose dependent rect. 13 20
711 16.48 radiation 10.0 270 < th dose dependent sin 4 NA
802 16.53 wind 9.0 270 < th dose dependent rect. 18 8
809 16.54 wind 1.0 270 > th dose independent rect. 7 19
826 16.56 atmosphere 1015.0 270 < th dose independent rect. 18 8
836 16.56 radiation 40.0 90 < th dose dependent rect. 15 18
857 16.58 precipitation 0.1 270 < th dose independent rect. 12 9
858 16.58 atmosphere 995.0 270 > th dose independent rect. 3 15
859 16.58 precipitation 0.1 270 < th dose independent rect. 21 15
862 16.58 precipitation 0.1 270 < th dose dependent rect. 12 9
863 16.58 precipitation 0.1 270 < th dose dependent rect. 21 15
871 16.59 wind 1.0 270 > th dose independent rect. 12 9
872 16.59 wind 9.0 270 < th dose independent rect. 21 15
882 16.60 temperature 20.0 10 > th dose independent rect. 9 6
894 16.60 temperature 10.0 270 > th dose dependent rect. 2 5
904 16.61 atmosphere 995.0 90 > th dose independent rect. 9 19
914 16.62 atmosphere 1015.0 270 < th dose independent rect. 21 15
917 16.62 temperature 10.0 10 > th dose dependent rect. 9 6
934 16.64 wind 1.0 270 > th dose independent rect. 7 6
940 16.64 precipitation 0.1 10 < th dose independent rect. 9 19
941 16.64 atmosphere 1015.0 270 < th dose dependent rect. 7 5
944 16.64 precipitation 0.1 10 < th dose dependent rect. 9 19
973 16.67 humidity 90.0 10 < th dose independent rect. 9 6
974 16.67 radiation 10.0 30 > th dose independent rect. 9 6
977 16.67 wind 9.0 270 < th dose independent rect. 12 9
978 16.67 temperature 10.0 270 > th dose independent rect. 12 9
979 16.67 temperature 10.0 270 > th dose independent rect. 21 15
980 16.67 atmosphere 995.0 270 > th dose independent rect. 21 15