BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0589900 Os04g0589900|AK070449
(379 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0589900 HMG-I and HMG-Y, DNA-binding domain containing... 491 e-139
Os10g0572900 Protein of unknown function DUF296 domain cont... 244 1e-64
Os08g0512400 HMG-I and HMG-Y, DNA-binding domain containing... 176 3e-44
Os09g0491708 HMG-I and HMG-Y, DNA-binding domain containing... 173 2e-43
Os02g0824300 HMG-I and HMG-Y, DNA-binding domain containing... 170 2e-42
Os02g0125200 HMG-I and HMG-Y, DNA-binding domain containing... 160 1e-39
Os08g0118000 HMG-I and HMG-Y, DNA-binding domain containing... 152 4e-37
Os11g0149100 Protein of unknown function DUF296 domain cont... 140 1e-33
Os12g0147000 Protein of unknown function DUF296 domain cont... 139 3e-33
Os06g0326000 HMG-I and HMG-Y, DNA-binding domain containing... 126 3e-29
Os04g0683900 HMG-I and HMG-Y, DNA-binding domain containing... 112 3e-25
Os03g0105700 Protein of unknown function DUF296 domain cont... 77 1e-14
Os02g0713700 Protein of unknown function DUF296 domain cont... 71 1e-12
Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing... 71 1e-12
Os02g0448000 Protein of unknown function DUF296 domain cont... 69 7e-12
Os03g0270000 Protein of unknown function DUF296 domain cont... 66 4e-11
Os08g0563200 Protein of unknown function DUF296 domain cont... 66 5e-11
>Os04g0589900 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 379
Score = 491 bits (1264), Expect = e-139, Method: Compositional matrix adjust.
Identities = 264/379 (69%), Positives = 264/379 (69%)
Query: 1 MDGREXXXXXXXXXXXXAGGGVMMPQHPYGAAPAMPPGSANVMHGVPLSFNPMASPTASS 60
MDGRE AGGGVMMPQHPYGAAPAMPPGSANVMHGVPLSFNPMASPTASS
Sbjct: 1 MDGREQQQQPRVSSPPPAGGGVMMPQHPYGAAPAMPPGSANVMHGVPLSFNPMASPTASS 60
Query: 61 PMKPADMSGTMYRTDPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGNIGLGL 120
PMKPADMSGTMYRTDP DGNIGLGL
Sbjct: 61 PMKPADMSGTMYRTDPVVQGMQQQPGSGGGGTAVGGGELVKKKRGRPRKYGPDGNIGLGL 120
Query: 121 KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLDALGSSGTSFTPHIITVKPN 180
K QLDALGSSGTSFTPHIITVKPN
Sbjct: 121 KPAAAAGTEAGGPSGGAGSNSNPDGKRRGRPPGSGKKKQLDALGSSGTSFTPHIITVKPN 180
Query: 181 EDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIVTYEGHFDILSLSGSFLLA 240
EDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIVTYEGHFDILSLSGSFLLA
Sbjct: 181 EDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIVTYEGHFDILSLSGSFLLA 240
Query: 241 EDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGSFIAEGKKGKEEHLKRE 300
EDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGSFIAEGKKGKEEHLKRE
Sbjct: 241 EDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGSFIAEGKKGKEEHLKRE 300
Query: 301 PTSAPTPNHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPNGSTFNNSGHPMHSSYAPVS 360
PTSAPTPNH PNGSTFNNSGHPMHSSYAPVS
Sbjct: 301 PTSAPTPNHAAGFGAATAASPPSDGSSSDHSDDPGSPMGPNGSTFNNSGHPMHSSYAPVS 360
Query: 361 WSLSGNQGRYDPDLKMMTD 379
WSLSGNQGRYDPDLKMMTD
Sbjct: 361 WSLSGNQGRYDPDLKMMTD 379
>Os10g0572900 Protein of unknown function DUF296 domain containing protein
Length = 251
Score = 244 bits (622), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/231 (59%), Positives = 157/231 (67%), Gaps = 12/231 (5%)
Query: 159 QLDALGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATS 218
Q +ALGS G +FTPHI+TVK EDVASKIMAFSQQGPRT CI+SANGA+ TLRQPATS
Sbjct: 23 QFEALGSWGIAFTPHILTVKAGEDVASKIMAFSQQGPRTVCILSANGAISNVTLRQPATS 82
Query: 219 GGIVTYEGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPV 278
GG+VTYEG F+I+SLSGSFLLAEDGDTRSRTGGLSVALAGSDGR++GGCVAGMLMAATPV
Sbjct: 83 GGLVTYEGRFEIISLSGSFLLAEDGDTRSRTGGLSVALAGSDGRVLGGCVAGMLMAATPV 142
Query: 279 QVVVGSFIAEGKKGKE-EHLKREPTSAPTPNHXXXXXXXXXXXXXXXXXXXXXXXXXXXX 337
QVVV SFIAEGKK K E K EP SAP
Sbjct: 143 QVVVASFIAEGKKSKPVETRKVEPMSAPP--QMATYVPAPVASPPSEGTSSGSSDDSGSP 200
Query: 338 XXPNGSTFNNSG--------HPMHSSYAPVSWSLSG-NQGRYDPDLKMMTD 379
+G +N+SG M +YA WSLS +Q R+D D+KMM++
Sbjct: 201 INHSGMPYNHSGQQQQHQQHQHMPPAYASGGWSLSAHHQNRHDSDMKMMSN 251
>Os08g0512400 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 292
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 96/148 (64%), Positives = 120/148 (81%)
Query: 159 QLDALGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATS 218
++DA+GS+G FTPH+ITV EDV++KIM+F+Q G R C++SANGA+ TLRQ ATS
Sbjct: 93 RIDAVGSAGVGFTPHVITVLAGEDVSAKIMSFAQHGNRAVCVLSANGAISNVTLRQTATS 152
Query: 219 GGIVTYEGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPV 278
GG VTYEG F+ILSLSGSFLL + G RSRTGGLSV+LAG DGR++GG VAG+L+AATPV
Sbjct: 153 GGTVTYEGRFEILSLSGSFLLTDHGGQRSRTGGLSVSLAGPDGRLLGGGVAGLLIAATPV 212
Query: 279 QVVVGSFIAEGKKGKEEHLKREPTSAPT 306
Q+VVGSF +EGKK ++H EP SAP+
Sbjct: 213 QIVVGSFNSEGKKEPKQHAHSEPASAPS 240
>Os09g0491708 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 359
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 95/143 (66%), Positives = 115/143 (80%)
Query: 163 LGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIV 222
+GS+G FTPH+I VK EDV++KIM+FSQ G R C++SANGA+ TLRQ ATSGG V
Sbjct: 166 IGSAGAGFTPHVIFVKAGEDVSAKIMSFSQHGTRGVCVLSANGAISNVTLRQAATSGGTV 225
Query: 223 TYEGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVV 282
TYEG F+ILSLSGSFLL+E+G RSRTGGLSV+LAG DGR++GG VAG+L AA+PVQ+VV
Sbjct: 226 TYEGRFEILSLSGSFLLSENGGHRSRTGGLSVSLAGPDGRVLGGGVAGLLTAASPVQIVV 285
Query: 283 GSFIAEGKKGKEEHLKREPTSAP 305
GSF EGKKG + H +P SAP
Sbjct: 286 GSFNTEGKKGPKLHAPSDPMSAP 308
>Os02g0824300 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 394
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/145 (56%), Positives = 107/145 (73%)
Query: 163 LGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIV 222
LGS GT FTPH+I + P EDVA++IM+FSQQGPR CIISA GA+ TATL Q + SGG+V
Sbjct: 203 LGSVGTGFTPHVIIISPGEDVAARIMSFSQQGPRAVCIISATGAVSTATLHQDSNSGGVV 262
Query: 223 TYEGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVV 282
TYEG F+IL LSGS+L+ E+G +R+R+GGL +AL G D R++GG V G+L AA VQV+V
Sbjct: 263 TYEGRFEILCLSGSYLVIEEGGSRTRSGGLCIALCGPDHRVIGGSVGGVLTAAGTVQVIV 322
Query: 283 GSFIAEGKKGKEEHLKREPTSAPTP 307
GSF+ G K + ++E + P
Sbjct: 323 GSFMYGGTKKNKAKAEQETENNEEP 347
>Os02g0125200 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 388
Score = 160 bits (406), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/122 (63%), Positives = 97/122 (79%)
Query: 165 SSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIVTY 224
+SG +FTPHII V EDV K+++FSQQGPR CI+SANG + TLRQ T GG VTY
Sbjct: 167 ASGANFTPHIINVAAGEDVNMKVISFSQQGPRAICILSANGVISNVTLRQQDTLGGTVTY 226
Query: 225 EGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGS 284
EG F++LSLSGSF + G TRSR+GG+SV+LA +DGR++GG VAG+L+AA+PVQVVVGS
Sbjct: 227 EGRFELLSLSGSFTPTDSGGTRSRSGGMSVSLAATDGRVIGGGVAGLLVAASPVQVVVGS 286
Query: 285 FI 286
F+
Sbjct: 287 FL 288
>Os08g0118000 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 372
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 87/156 (55%), Positives = 115/156 (73%), Gaps = 8/156 (5%)
Query: 160 LDALG-----SSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQ 214
D++G S+G +FTPHIITV P EDV K+++FSQQGPR CI+SANG + TLRQ
Sbjct: 153 FDSIGEMVACSAGANFTPHIITVAPGEDVTMKVISFSQQGPRAICILSANGVISNVTLRQ 212
Query: 215 PATSGGIVTYEGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMA 274
P +SGG +TYEG F++LSLSGSF+ E+ TRSR+GG+SV+LA DGR+VGG VAG+L+A
Sbjct: 213 PDSSGGTLTYEGRFELLSLSGSFMPTENSGTRSRSGGMSVSLASPDGRVVGGGVAGLLVA 272
Query: 275 ATPVQVVVGSFIAE---GKKGKEEHLKREPTSAPTP 307
A+PVQ+VVGSF+ +K K+ ++ P A TP
Sbjct: 273 ASPVQIVVGSFLPSYQMEQKNKKPRVEAAPALAQTP 308
>Os11g0149100 Protein of unknown function DUF296 domain containing protein
Length = 366
Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 80/135 (59%), Positives = 101/135 (74%), Gaps = 4/135 (2%)
Query: 165 SSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIVTY 224
S+G SFTPH+I V EDVA +IM+FSQ+GPR+ CI+SANG + L QP +SG TY
Sbjct: 132 SAGGSFTPHVIIVGTGEDVAGRIMSFSQKGPRSICILSANGTISNVALSQPGSSGSTFTY 191
Query: 225 EGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGS 284
EG F+IL L+GSF +AE+G R RTGGLSV+LAG DGR+VGG VAGML AA+P+QV+VGS
Sbjct: 192 EGRFEILQLTGSFTMAEEGG-RRRTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGS 250
Query: 285 FIAEGKKGKEEHLKR 299
F+ K +H +R
Sbjct: 251 FLPNSLK---QHQRR 262
>Os12g0147000 Protein of unknown function DUF296 domain containing protein
Length = 387
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 78/135 (57%), Positives = 102/135 (75%), Gaps = 4/135 (2%)
Query: 165 SSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIVTY 224
S+G SFTPH+I V EDVA++IM+FSQ+GPR+ CI++ANG + L QP +SG +Y
Sbjct: 143 SAGGSFTPHVIIVATGEDVAARIMSFSQKGPRSVCILAANGTISNVVLNQPGSSGSTFSY 202
Query: 225 EGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGS 284
EG F+IL L+GSF +AE+G R RTGGLSV+LAG DGR+VGG VAGML AA+P+QV+VGS
Sbjct: 203 EGCFEILQLTGSFTIAEEG-VRRRTGGLSVSLAGPDGRVVGGVVAGMLRAASPIQVIVGS 261
Query: 285 FIAEGKKGKEEHLKR 299
F+ K +H +R
Sbjct: 262 FLPNNLK---QHQRR 273
>Os06g0326000 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 378
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 105/147 (71%), Gaps = 5/147 (3%)
Query: 162 ALGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGI 221
A GSS P +ITV+ EDV S++M+F++ G C++SANGA+ TLRQ +SG
Sbjct: 192 APGSSVIGLKPSVITVQVGEDVVSRVMSFTKNG-WAVCVLSANGAVSNMTLRQAGSSGAT 250
Query: 222 -VTYEGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQV 280
V YEGHF+ILSLSGS+LL+E SR GGLSV+LAG DGR++GG VAG L AATPVQV
Sbjct: 251 TVNYEGHFEILSLSGSYLLSESVGLSSRAGGLSVSLAGPDGRVLGGGVAGPLNAATPVQV 310
Query: 281 VVGSFIAEGKKGKEEHLKREPTSAPTP 307
V+GSF+A+ KKG ++ + P+ AP P
Sbjct: 311 VIGSFLADVKKGHKQAM---PSGAPYP 334
>Os04g0683900 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 419
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 85/143 (59%), Gaps = 15/143 (10%)
Query: 164 GSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSG---- 219
GS+GTSFTPHIIT P+EDVA KI+AF+ R C++SA G++ LR PA
Sbjct: 212 GSAGTSFTPHIITASPSEDVAGKIVAFANHSSRAVCVLSATGSVSRVVLRHPADGAMSRV 271
Query: 220 -------GIVTYEGHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGML 272
YEG ++ILS+SG + L +G ++ GLSV L + I+GG + G L
Sbjct: 272 HASSHYKNPAIYEGLYEILSMSGCYNLMNEG----QSDGLSVTLCSPERHIIGGVLGGAL 327
Query: 273 MAATPVQVVVGSFIAEGKKGKEE 295
+AA+ VQVV+GSF+ G K K +
Sbjct: 328 VAASTVQVVLGSFVQGGSKPKSK 350
>Os03g0105700 Protein of unknown function DUF296 domain containing protein
Length = 298
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 170 FTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIVTY-EGHF 228
PH++ + E++ KI A S+ R C++S GA+ ATL S G+ +Y +G
Sbjct: 102 LQPHLLQIDAGEEIIPKITALSKSNGRVICVLSVLGAVQEATL---LLSSGVTSYHKGPL 158
Query: 229 DILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGSFIAE 288
+I+ L GS L D G L V LA D ++GG + G L AATPVQVVV SF ++
Sbjct: 159 EIIRLFGSILTPND------QGCLRVTLASGDSSVIGGVITGPLKAATPVQVVVASFYSD 212
>Os02g0713700 Protein of unknown function DUF296 domain containing protein
Length = 336
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 63/116 (54%), Gaps = 6/116 (5%)
Query: 173 HIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATS---GGIVTYEGHFD 229
H++ V DV + ++++ R C++S GA+ LRQP S + T G F+
Sbjct: 129 HVLEVAGGADVVDCVAEYARRRGRGVCVLSGGGAVVNVALRQPGASPPGSMVATLRGRFE 188
Query: 230 ILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGSF 285
ILSL+G+ L S GL+V L+G G+++GG V G L+AA PV ++ SF
Sbjct: 189 ILSLTGTVLPPPAPPGAS---GLTVFLSGGQGQVIGGSVVGPLVAAGPVVLMAASF 241
>Os02g0820800 HMG-I and HMG-Y, DNA-binding domain containing protein
Length = 266
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 173 HIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIVTYEGHFDILS 232
H++ V DVA I FS++ R C++S G + LRQP+ G +V G F+ILS
Sbjct: 88 HVMEVAGGADVADAIAQFSRRRQRGVCVLSGAGTVANVALRQPSAPGAVVALHGRFEILS 147
Query: 233 LSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGSF 285
L+G+FL G + GL+V LAG G++VGG V G L+AA PV V+ +F
Sbjct: 148 LTGTFL---PGPAPPGSTGLTVYLAGGQGQVVGGSVVGSLIAAGPVMVIASTF 197
>Os02g0448000 Protein of unknown function DUF296 domain containing protein
Length = 316
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 166 SGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIVTYE 225
S + H++ V D++ I F+++ R C++S G + TLRQPA+ G +V
Sbjct: 120 SANTLRTHVMEVAGGCDISESITTFARRRQRGVCVLSGAGTVTNVTLRQPASQGAVVALH 179
Query: 226 GHFDILSLSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGSF 285
G F+ILSLSGSFL GL+V LAG G++VGG V G L AA PV ++ SF
Sbjct: 180 GRFEILSLSGSFLPPP---APPEATGLTVYLAGGQGQVVGGSVVGALTAAGPVVIMAASF 236
>Os03g0270000 Protein of unknown function DUF296 domain containing protein
Length = 258
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 68/116 (58%), Gaps = 8/116 (6%)
Query: 173 HIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSG-GIVTYEGHFDIL 231
H++ + D+ I FS++ R ++S +GA+ TLRQPA +G V G F+IL
Sbjct: 75 HVLEIASGADIVEAIAGFSRRRQRGVSVLSGSGAVTNVTLRQPAGTGAAAVALRGRFEIL 134
Query: 232 SLSGSFLLAED--GDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGSF 285
S+SG+FL A G T GL+V LAG G++VGG V G L+A+ PV V+ +F
Sbjct: 135 SMSGAFLPAPAPPGAT-----GLAVYLAGGQGQVVGGSVMGELIASGPVMVIAATF 185
>Os08g0563200 Protein of unknown function DUF296 domain containing protein
Length = 235
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 64/113 (56%), Gaps = 3/113 (2%)
Query: 173 HIITVKPNEDVASKIMAFSQQGPRTTCIISANGALCTATLRQPATSGGIVTYEGHFDILS 232
H++ V DVA I F+++ R C++S G + LRQPA +V G F+ILS
Sbjct: 65 HVMEVAGGADVAESIAHFARRRQRGVCVLSGAGTVTDVALRQPAAPSAVVALRGRFEILS 124
Query: 233 LSGSFLLAEDGDTRSRTGGLSVALAGSDGRIVGGCVAGMLMAATPVQVVVGSF 285
L+G+FL G + GL+V LAG G++VGG V G L AA PV V+ +F
Sbjct: 125 LTGTFL---PGPAPPGSTGLTVYLAGGQGQVVGGSVVGTLTAAGPVMVIASTF 174
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.131 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,782,713
Number of extensions: 406372
Number of successful extensions: 1071
Number of sequences better than 1.0e-10: 25
Number of HSP's gapped: 1045
Number of HSP's successfully gapped: 25
Length of query: 379
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 276
Effective length of database: 11,657,759
Effective search space: 3217541484
Effective search space used: 3217541484
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)