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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0563200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF296 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.27 (0.0204) R2 : 0.00175
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0384 (0.043) R2dN8 : 0.00226 R2N8 : 0.00175
σ : 0.385
deviance : 67.91
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.57 0.378 3.14 1.19 0.0605 -0.828 -0.127 6.3 0.132 4.92 28.8 1715 -- --
66.39 0.379 3.26 0.171 0.0877 -0.134 -0.165 -- 0.0753 4.89 21.5 1739 -- --
64.58 0.374 3.14 1.22 0.0557 -0.824 -- 6.34 0.145 5.35 28.64 1728 -- --
66.37 0.379 3.25 0.177 0.1 -0.134 -- -- 0.0841 4.78 20.7 1352 -- --
64.74 0.375 3.14 1.2 -- -0.806 -- 6.1 0.158 -- 28.51 1739 -- --
67 0.384 3.26 0.123 0.0928 -- -0.132 -- 0.0496 5.5 -- -- -- --
67.04 0.383 3.26 0.123 0.0926 -- -- -- 0.0503 5.86 -- -- -- --
66.75 0.381 3.25 0.187 -- -0.167 -- -- 0.0901 -- 19.34 2018 -- --
67.09 0.381 3.26 -- 0.0964 -0.116 -- -- 0.0581 4.47 20.7 1052 -- --
67.49 0.384 3.26 0.126 -- -- -- -- 0.0524 -- -- -- -- --
67.44 0.384 3.26 -- 0.0945 -- -- -- 0.0365 5.8 -- -- -- --
67.35 0.382 3.26 -- -- -0.144 -- -- 0.0591 -- 19.8 527 -- --
67.91 0.385 3.27 -- -- -- -- -- 0.0384 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.17 atmosphere 1010.0 30 < th dose dependent rect. 2 1
4 61.44 wind 3.0 10 < th dose independent rect. 2 1
5 61.45 temperature 15.0 10 > th dose independent rect. 3 23
6 61.48 wind 5.0 10 < th dose dependent rect. 2 1
12 61.53 temperature 10.0 10 > th dose dependent rect. 2 1
14 61.54 temperature 10.0 10 > th dose independent rect. 2 1
16 61.54 temperature 30.0 10 < th dose independent rect. 2 1
17 61.54 humidity 50.0 10 > th dose independent rect. 2 1
20 61.54 atmosphere 995.0 10 > th dose independent rect. 2 1
21 61.54 atmosphere 1010.0 10 < th dose independent rect. 2 1
23 61.54 radiation 1.0 10 < th dose independent rect. 2 1
28 61.54 precipitation 0.1 10 < th dose independent rect. 2 1
32 61.54 radiation 1.0 10 < th dose dependent rect. 2 1
37 61.54 precipitation 0.1 10 < th dose dependent rect. 2 1
38 61.56 humidity 50.0 10 > th dose dependent rect. 2 1
46 61.62 atmosphere 995.0 10 > th dose independent rect. 3 23
50 61.70 temperature 30.0 10 < th dose dependent rect. 2 1
52 61.72 wind 1.0 30 > th dose independent rect. 2 1
98 61.83 atmosphere 995.0 10 > th dose dependent rect. 2 1
99 61.83 atmosphere 1005.0 10 > th dose dependent rect. 2 1
100 61.84 wind 9.0 10 < th dose independent rect. 3 23
101 61.85 atmosphere 1005.0 90 > th dose dependent rect. 2 1
116 62.55 radiation 1.0 43200 < th dose dependent rect. 3 1
120 62.68 precipitation 0.1 10 < th dose independent rect. 3 23
121 62.68 precipitation 0.1 10 < th dose dependent rect. 3 23
137 63.17 atmosphere 1000.0 720 > th dose independent rect. 3 8
138 63.19 precipitation 0.1 720 < th dose independent rect. 15 8
139 63.19 precipitation 0.1 720 < th dose dependent rect. 15 8
157 63.28 wind 9.0 1440 < th dose independent rect. 3 1
158 63.28 temperature 10.0 1440 > th dose independent rect. 3 1
161 63.28 temperature 30.0 1440 < th dose independent rect. 3 1
165 63.28 humidity 50.0 1440 > th dose independent rect. 3 1
174 63.28 atmosphere 995.0 1440 > th dose independent rect. 3 1
175 63.28 radiation 1.0 1440 < th dose independent rect. 3 1
195 63.28 atmosphere 995.0 720 > th dose independent rect. 23 16
196 63.28 temperature 10.0 1440 > th dose independent rect. 4 23
214 63.34 temperature 10.0 720 > th dose independent rect. 15 8
215 63.34 temperature 10.0 720 > th dose independent rect. 23 16
218 63.36 temperature 10.0 720 > th dose independent rect. 3 8
220 63.36 temperature 10.0 720 > th dose independent rect. 11 16
226 63.43 wind 9.0 720 < th dose independent rect. 3 8
227 63.43 temperature 25.0 720 > th dose dependent rect. 3 5
232 63.46 humidity 90.0 90 < th dose independent rect. 2 1
239 63.55 humidity 50.0 720 > th dose independent rect. 3 8
241 63.57 humidity 70.0 30 > th dose independent rect. 18 1
242 63.57 atmosphere 1015.0 720 < th dose independent rect. 3 8
244 63.58 humidity 50.0 30 > th dose independent rect. 3 23
248 63.65 precipitation 0.1 720 < th dose independent rect. 11 16
250 63.65 precipitation 0.1 720 < th dose dependent rect. 11 16
281 63.75 temperature 30.0 30 < th dose independent rect. 18 1
290 63.81 wind 5.0 14400 < th dose independent rect. 11 1
291 63.81 atmosphere 1005.0 10 > th dose dependent rect. 18 1
293 63.82 humidity 90.0 10 > th dose independent rect. 24 3
312 63.85 precipitation 0.1 720 < th dose independent rect. 3 8
319 63.85 precipitation 0.1 720 < th dose dependent rect. 3 8
324 63.87 temperature 30.0 30 < th dose dependent rect. 18 1
326 63.88 atmosphere 1010.0 30 < th dose independent rect. 3 23
330 63.90 temperature 25.0 720 > th dose independent rect. 3 5
332 63.90 precipitation 0.1 720 < th dose independent rect. 23 16
333 63.90 precipitation 0.1 720 < th dose dependent rect. 23 16
339 63.94 humidity 90.0 90 < th dose independent rect. 1 3
342 63.94 radiation 40.0 720 < th dose independent rect. 15 8
343 63.94 humidity 70.0 30 > th dose dependent rect. 18 1
346 63.95 wind 5.0 14400 > th dose independent rect. 11 1
351 64.00 wind 9.0 720 < th dose independent rect. 15 8
352 64.00 wind 3.0 14400 > th dose dependent rect. 11 1
353 64.00 temperature 10.0 90 > th dose dependent rect. 3 22
355 64.02 temperature 25.0 30 > th dose independent rect. 24 11
357 64.02 temperature 25.0 720 > th dose dependent rect. 24 9
364 64.06 wind 7.0 720 < th dose independent rect. 16 15
369 64.09 atmosphere 995.0 720 > th dose independent rect. 11 16
370 64.10 atmosphere 995.0 720 > th dose independent rect. 15 8
372 64.10 radiation 10.0 30 < th dose independent rect. 3 23
375 64.11 wind 7.0 14400 < th dose dependent rect. 10 2
405 64.23 humidity 80.0 14400 < th dose dependent rect. 1 8
416 64.27 wind 9.0 720 < th dose independent rect. 23 16
434 64.32 temperature 15.0 30 > th dose dependent rect. 3 4
435 64.33 temperature 20.0 30 > th dose independent rect. 3 4
438 64.34 wind 7.0 720 < th dose independent rect. 17 12
439 64.34 temperature 20.0 720 > th dose dependent rect. 3 1
460 64.41 temperature 25.0 10 > th dose dependent rect. 24 11
466 64.43 humidity 90.0 720 > th dose independent rect. 3 1
497 64.46 temperature 25.0 30 > th dose independent rect. 20 3
508 64.46 wind 9.0 30 < th dose dependent rect. 3 23
514 64.48 wind 7.0 720 < th dose independent rect. 10 19
519 64.49 humidity 70.0 720 > th dose dependent rect. 3 1
536 64.52 temperature 25.0 720 > th dose independent rect. 6 1
540 64.54 humidity 90.0 720 < th dose independent rect. 1 3
552 64.56 wind 5.0 90 < th dose independent rect. 15 12
557 64.57 humidity 80.0 14400 < th dose dependent rect. 7 1
566 64.59 radiation 20.0 10 < th dose dependent rect. 3 23
576 64.63 radiation 10.0 30 < th dose independent rect. 3 5
580 64.63 wind 1.0 10 < th dose independent rect. 6 21
585 64.63 temperature 25.0 10 > th dose dependent rect. 16 19
589 64.64 radiation 10.0 1440 > th dose independent rect. 17 13
600 64.65 humidity 90.0 90 < th dose independent rect. 1 22
604 64.66 wind 7.0 720 < th dose independent rect. 16 6
608 64.66 temperature 25.0 90 > th dose dependent rect. 20 3
616 64.68 humidity 90.0 720 < th dose independent rect. 2 1
619 64.68 wind 7.0 720 < th dose independent rect. 17 4
620 64.68 precipitation 0.1 720 < th dose independent rect. 5 12
626 64.68 precipitation 0.1 720 < th dose dependent rect. 5 12
628 64.69 wind 7.0 720 > th dose independent rect. 15 2
630 64.69 radiation 40.0 90 < th dose independent rect. 13 14
639 64.70 radiation 10.0 1440 < th dose independent rect. 17 11
640 64.70 wind 1.0 10 < th dose independent rect. 13 14
664 64.71 wind 7.0 720 < th dose independent rect. 2 19
673 64.71 temperature 15.0 30 > th dose dependent rect. 3 6
676 64.72 radiation 10.0 1440 < th dose independent rect. 17 1
682 64.72 radiation 10.0 43200 < th dose dependent rect. 23 1
687 64.73 radiation 10.0 1440 > th dose independent rect. 17 1
691 64.73 radiation 10.0 1440 < th dose independent rect. 17 3
706 64.73 atmosphere 1000.0 30 > th dose independent rect. 23 23
709 64.73 temperature 25.0 10 > th dose dependent rect. 4 7
712 64.74 temperature 20.0 30 > th dose independent rect. 3 6
713 64.74 radiation 10.0 1440 < th dose independent rect. 17 7
723 64.74 temperature 25.0 10 > th dose dependent rect. 6 5
726 64.75 temperature 25.0 10 > th dose independent rect. 8 3
728 64.75 wind 7.0 720 < th dose independent rect. 10 10
730 64.75 wind 7.0 720 < th dose independent rect. 3 17
737 64.75 radiation 40.0 1440 < th dose dependent rect. 18 10
741 64.76 radiation 10.0 1440 < th dose independent rect. 17 5
750 64.76 radiation 40.0 90 < th dose dependent rect. 13 14
756 64.77 atmosphere 1010.0 30 < th dose independent rect. 3 4
761 64.77 temperature 25.0 4320 > th dose dependent rect. 6 1
774 64.78 temperature 30.0 1440 > th dose independent rect. 15 20
778 64.79 temperature 30.0 720 < th dose independent rect. 18 9
779 64.79 wind 1.0 10 < th dose independent rect. 17 10
780 64.79 atmosphere 995.0 90 > th dose independent rect. 11 10
786 64.79 humidity 80.0 30 > th dose dependent rect. 3 22
791 64.80 radiation 40.0 30 < th dose dependent rect. 3 8
792 64.80 temperature 25.0 30 > th dose dependent rect. 14 21
800 64.81 atmosphere 1000.0 10 > th dose independent rect. 2 12
801 64.81 temperature 30.0 1440 < th dose independent rect. 15 20
807 64.81 radiation 10.0 1440 > th dose dependent rect. 17 13
815 64.82 atmosphere 995.0 90 > th dose independent rect. 3 12
832 64.83 humidity 80.0 30 > th dose independent rect. 3 4
835 64.83 wind 7.0 720 < th dose independent rect. 8 14
837 64.83 wind 9.0 720 < th dose independent rect. 16 23
840 64.83 wind 9.0 30 < th dose dependent rect. 3 10
863 64.85 temperature 15.0 90 > th dose independent rect. 5 22
869 64.85 radiation 30.0 30 < th dose dependent rect. 3 6
876 64.86 atmosphere 1015.0 30 < th dose independent rect. 7 20
877 64.86 radiation 10.0 1440 > th dose dependent rect. 17 1
883 64.86 wind 5.0 30 < th dose dependent rect. 3 4
896 64.87 humidity 70.0 14400 > th dose independent rect. 8 1
903 64.87 precipitation 0.1 30 < th dose independent rect. 7 20
911 64.87 radiation 40.0 90 < th dose dependent rect. 11 16
912 64.87 precipitation 0.1 30 < th dose dependent rect. 7 20
913 64.87 radiation 1.0 30 < th dose dependent rect. 1 23
915 64.88 radiation 40.0 720 < th dose independent rect. 15 1
916 64.88 temperature 15.0 90 > th dose independent rect. 15 12
918 64.88 temperature 15.0 30 > th dose independent rect. 7 20
919 64.88 wind 7.0 720 < th dose independent rect. 23 23
920 64.88 humidity 90.0 90 < th dose dependent rect. 2 1
978 64.89 wind 3.0 30 < th dose independent rect. 3 4
980 64.89 humidity 90.0 90 < th dose independent rect. 21 13
985 64.89 wind 1.0 30 > th dose dependent rect. 2 1
999 64.89 humidity 50.0 30 > th dose dependent rect. 3 4